Wall clock time and date at job start Tue Mar 31 2020 07:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47095 * 2 1 4 4 C 1.50700 * 109.47192 * 239.99999 * 2 1 3 5 5 C 1.38229 * 120.00127 * 206.29620 * 4 2 1 6 6 C 1.38233 * 120.00029 * 179.76636 * 5 4 2 7 7 C 1.38237 * 120.00045 * 0.50898 * 6 5 4 8 8 S 1.76192 * 120.00153 * 179.72585 * 7 6 5 9 9 C 1.81405 * 102.99837 * 270.01848 * 8 7 6 10 10 O 1.42106 * 103.00012 * 156.16751 * 8 7 6 11 11 C 1.38235 * 119.99900 * 359.74308 * 7 6 5 12 12 C 1.38235 * 119.99684 * 26.57097 * 4 2 1 13 13 N 1.46500 * 109.47185 * 119.99845 * 2 1 3 14 14 C 1.46505 * 119.99674 * 53.72487 * 13 2 1 15 15 C 1.34775 * 120.00157 * 233.72207 * 13 2 1 16 16 O 1.21682 * 119.99750 * 0.02562 * 15 13 2 17 17 C 1.46378 * 120.00080 * 180.02562 * 15 13 2 18 18 H 1.08007 * 119.99868 * 0.02562 * 17 15 13 19 19 C 1.40045 * 120.00035 * 179.72343 * 17 15 13 20 20 N 1.30670 * 119.99855 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99901 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47178 * 90.00405 * 21 19 17 23 23 H 1.48501 * 109.46958 * 210.00128 * 21 19 17 24 24 H 1.48495 * 109.47488 * 330.00163 * 21 19 17 25 25 H 1.09006 * 109.46927 * 299.99520 * 1 2 3 26 26 H 1.08992 * 109.47273 * 60.00162 * 1 2 3 27 27 H 1.09002 * 109.46774 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00113 * 359.97438 * 5 4 2 29 29 H 1.08005 * 120.00347 * 180.23338 * 6 5 4 30 30 H 1.08999 * 109.47057 * 60.00189 * 9 8 7 31 31 H 1.09007 * 109.46774 * 179.97438 * 9 8 7 32 32 H 1.08997 * 109.47018 * 300.00077 * 9 8 7 33 33 H 1.08001 * 120.00160 * 179.97438 * 11 7 6 34 34 H 1.07997 * 120.00434 * 0.02562 * 12 4 2 35 35 H 1.09002 * 109.47027 * 264.63746 * 14 13 2 36 36 H 1.09000 * 109.47302 * 24.64338 * 14 13 2 37 37 H 1.09008 * 109.46938 * 144.64283 * 14 13 2 38 38 H 0.97002 * 119.99873 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 3.2746 -1.3166 -1.2198 6 6 3.7333 -1.9724 -2.3469 7 6 2.9543 -2.0129 -3.4881 8 16 3.5420 -2.8426 -4.9271 9 6 4.4232 -1.5333 -5.8216 10 8 2.3448 -3.1669 -5.6205 11 6 1.7142 -1.4022 -3.5005 12 6 1.2533 -0.7509 -2.3716 13 7 2.0184 -0.6906 1.1962 14 6 1.5548 -2.0468 1.4995 15 6 2.8941 -0.0783 2.0175 16 8 3.2788 1.0483 1.7657 17 6 3.3825 -0.7685 3.2124 18 1 3.0413 -1.7687 3.4356 19 6 4.2969 -0.1345 4.0627 20 7 4.7138 1.0735 3.7897 21 14 4.9196 -1.0150 5.5879 22 1 6.1450 -1.7830 5.2505 23 1 5.2352 -0.0171 6.6414 24 1 3.8737 -1.9449 6.0843 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.8854 -1.2808 -0.3298 29 1 4.7023 -2.4493 -2.3374 30 1 5.2318 -1.1493 -5.1998 31 1 4.8367 -1.9391 -6.7450 32 1 3.7309 -0.7251 -6.0574 33 1 1.1057 -1.4335 -4.3922 34 1 0.2848 -0.2731 -2.3815 35 1 0.7166 -1.9973 2.1946 36 1 1.2353 -2.5360 0.5793 37 1 2.3676 -2.6163 1.9505 38 1 5.3469 1.5128 4.3789 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356943939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:44 Heat of formation + Delta-G solvation = -69.144253 kcal Electronic energy + Delta-G solvation = -21472.959039 eV Core-core repulsion = 18213.268484 eV Total energy + Delta-G solvation = -3259.690555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88301 -39.24345 -36.85119 -36.46212 -34.59442 -33.38760 -31.90876 -30.35016 -29.54172 -28.25437 -27.42024 -24.95414 -23.54439 -22.48282 -20.54256 -19.09731 -18.50582 -17.75383 -17.71191 -16.71705 -16.37535 -16.20299 -15.77049 -15.65020 -15.50877 -14.80478 -14.63865 -14.35057 -14.22241 -14.03743 -13.76540 -13.50736 -13.29484 -13.26191 -13.08808 -13.00976 -12.74871 -12.72459 -12.51476 -12.23713 -12.10007 -12.04366 -11.89047 -11.24742 -10.91368 -10.08117 -9.91425 -9.74381 -9.29561 -9.12780 -8.27112 -6.82866 -0.06796 0.41910 0.99729 1.41959 1.42886 1.57991 1.80476 2.24740 2.47123 2.60820 2.86710 3.02292 3.57154 3.77418 3.88430 4.03480 4.23287 4.32138 4.34969 4.44090 4.48885 4.51915 4.62152 4.71584 4.79345 4.89506 4.99285 5.00824 5.07614 5.13429 5.18095 5.28739 5.33572 5.37681 5.63097 5.79251 5.98350 6.15157 6.41477 6.89715 7.41662 8.48150 8.68623 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.003838 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.680755 B = 7294.533520 C = 7826.808077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.170 3.830 3 H 0.066 0.934 4 C -0.059 4.059 5 C -0.134 4.134 6 C -0.033 4.033 7 C -0.473 4.473 8 S 1.405 4.595 9 C -0.498 4.498 10 O -0.922 6.922 11 C -0.072 4.072 12 C -0.138 4.138 13 N -0.635 5.635 14 C 0.107 3.893 15 C 0.542 3.458 16 O -0.631 6.631 17 C -0.565 4.565 18 H 0.092 0.908 19 C 0.031 3.969 20 N -0.821 5.821 21 Si 0.993 3.007 22 H -0.259 1.259 23 H -0.277 1.277 24 H -0.250 1.250 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.178 0.822 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.061 0.939 33 H 0.119 0.881 34 H 0.140 0.860 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -10.902 -12.953 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.065 3.935 3 H 0.084 0.916 4 C -0.060 4.060 5 C -0.154 4.154 6 C -0.052 4.052 7 C -0.568 4.568 8 S 1.603 4.397 9 C -0.656 4.656 10 O -0.918 6.918 11 C -0.091 4.091 12 C -0.157 4.157 13 N -0.371 5.371 14 C -0.036 4.036 15 C 0.348 3.652 16 O -0.519 6.519 17 C -0.601 4.601 18 H 0.110 0.890 19 C -0.184 4.184 20 N -0.450 5.450 21 Si 0.812 3.188 22 H -0.183 1.183 23 H -0.202 1.202 24 H -0.173 1.173 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.196 0.804 30 H 0.152 0.848 31 H 0.143 0.857 32 H 0.080 0.920 33 H 0.137 0.863 34 H 0.157 0.843 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.610 -11.098 -13.308 17.339 hybrid contribution -1.249 2.201 0.496 2.579 sum -0.639 -8.897 -12.812 15.611 Atomic orbital electron populations 1.22082 0.92890 1.02956 1.02311 1.19647 0.94941 0.95762 0.83127 0.91649 1.20605 0.94721 0.95670 0.95048 1.21246 0.95880 0.98999 0.99257 1.21213 0.99756 0.94497 0.89723 1.27918 1.01675 1.12858 1.14379 1.68701 0.96374 0.92525 0.82129 1.27771 1.10783 1.14634 1.12440 1.92955 1.48929 1.76808 1.73114 1.21135 0.95574 0.94556 0.97861 1.21270 1.00738 1.01266 0.92420 1.47790 1.47937 1.16911 1.24461 1.21423 0.99234 0.82940 1.00048 1.18630 0.77711 0.85146 0.83665 1.90548 1.62452 1.22233 1.76621 1.21493 1.27657 1.03270 1.07686 0.89025 1.26947 0.94581 0.94905 1.01991 1.70196 1.24761 1.13767 1.36294 0.85085 0.79389 0.78368 0.75912 1.18344 1.20174 1.17290 0.93229 0.89902 0.91039 0.87887 0.80427 0.84796 0.85679 0.91991 0.86279 0.84269 0.93916 0.91460 0.91744 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 8.30 71.98 0.60 -3.90 16 2 C 0.17 6.74 3.02 44.25 0.13 6.87 16 3 H 0.07 3.13 6.92 -2.39 -0.02 3.12 16 4 C -0.06 -2.04 4.88 -19.87 -0.10 -2.14 16 5 C -0.13 -4.54 9.15 22.27 0.20 -4.34 16 6 C -0.03 -0.80 9.75 22.27 0.22 -0.58 16 7 C -0.47 -11.20 5.61 22.27 0.12 -11.07 16 8 S 1.41 22.46 14.19 -56.49 -0.80 21.66 16 9 C -0.50 -6.71 10.70 113.37 1.21 -5.49 16 10 O -0.92 -27.07 16.90 -148.98 -2.52 -29.59 16 11 C -0.07 -2.05 9.44 22.27 0.21 -1.84 16 12 C -0.14 -4.10 9.14 22.27 0.20 -3.90 16 13 N -0.64 -28.28 1.86 -831.87 -1.55 -29.83 16 14 C 0.11 3.81 8.72 127.77 1.11 4.92 16 15 C 0.54 30.73 7.39 86.36 0.64 31.37 16 16 O -0.63 -41.73 14.36 -4.29 -0.06 -41.79 16 17 C -0.56 -31.00 8.73 24.83 0.22 -30.79 16 18 H 0.09 4.50 6.11 -2.91 -0.02 4.48 16 19 C 0.03 1.68 5.50 85.30 0.47 2.15 16 20 N -0.82 -49.37 11.83 21.83 0.26 -49.11 16 21 Si 0.99 39.80 29.56 68.60 2.03 41.83 16 22 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 23 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 25 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.08 2.14 6.54 -2.39 -0.02 2.12 16 27 H 0.07 1.99 7.35 -2.39 -0.02 1.97 16 28 H 0.10 4.15 7.32 -2.91 -0.02 4.13 16 29 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.12 3.42 7.45 -2.91 -0.02 3.39 16 34 H 0.14 3.59 6.08 -2.91 -0.02 3.57 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 2.06 7.29 -2.39 -0.02 2.04 16 37 H 0.06 2.33 6.41 -2.38 -0.02 2.31 16 38 H 0.27 14.93 8.29 -92.71 -0.77 14.16 16 Total: -1.00 -86.68 328.90 3.67 -83.01 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 1.07 Total: 22.53 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 5.24 Total: -18.73 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -1.29 Total: -78.94 kcal Atomic # 8 Polarization: -68.80 SS G_CDS: -2.58 Total: -71.38 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 16 Polarization: 22.46 SS G_CDS: -0.80 Total: 21.66 kcal Total: -86.68 3.67 -83.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356943939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.870 kcal (2) G-P(sol) polarization free energy of solvation -86.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds