Wall clock time and date at job start Tue Mar 31 2020 07:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47260 * 2 1 4 4 C 1.50702 * 109.47083 * 239.99868 * 2 1 3 5 5 C 1.38226 * 119.99831 * 295.55489 * 4 2 1 6 6 C 1.38239 * 120.00284 * 179.97438 * 5 4 2 7 7 C 1.38233 * 119.99509 * 0.09240 * 6 5 4 8 8 S 1.76201 * 120.00228 * 179.97438 * 7 6 5 9 9 C 1.81395 * 103.00063 * 269.86957 * 8 7 6 10 10 O 1.42108 * 102.99716 * 23.71727 * 8 7 6 11 11 C 1.38237 * 120.00256 * 359.83912 * 7 6 5 12 12 C 1.38233 * 119.99968 * 115.53616 * 4 2 1 13 13 N 1.46498 * 109.47194 * 119.99861 * 2 1 3 14 14 C 1.46500 * 120.00472 * 53.79321 * 13 2 1 15 15 C 1.34780 * 119.99898 * 233.79849 * 13 2 1 16 16 O 1.21688 * 120.00370 * 359.97438 * 15 13 2 17 17 C 1.46377 * 120.00178 * 180.02562 * 15 13 2 18 18 H 1.08009 * 119.99764 * 359.97438 * 17 15 13 19 19 C 1.40047 * 120.00352 * 179.97438 * 17 15 13 20 20 N 1.30664 * 119.99921 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99917 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47375 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47075 * 120.00217 * 21 19 17 24 24 H 1.48504 * 109.46856 * 239.99749 * 21 19 17 25 25 H 1.08998 * 109.46751 * 300.00052 * 1 2 3 26 26 H 1.08997 * 109.47199 * 60.00258 * 1 2 3 27 27 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00169 * 359.70116 * 5 4 2 29 29 H 1.08000 * 120.00554 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.47771 * 59.99505 * 9 8 7 31 31 H 1.09001 * 109.47175 * 179.97438 * 9 8 7 32 32 H 1.08999 * 109.46797 * 299.99668 * 9 8 7 33 33 H 1.08001 * 120.00271 * 180.10987 * 11 7 6 34 34 H 1.08002 * 120.00087 * 359.97327 * 12 4 2 35 35 H 1.09003 * 109.46939 * 89.37381 * 14 13 2 36 36 H 1.08990 * 109.47665 * 209.37705 * 14 13 2 37 37 H 1.08999 * 109.46875 * 329.38048 * 14 13 2 38 38 H 0.96998 * 120.00185 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7758 -2.0576 -1.4038 6 6 2.2361 -2.7093 -2.5327 7 6 2.9546 -2.0140 -3.4873 8 16 3.5419 -2.8446 -4.9260 9 6 5.1821 -3.4298 -4.4183 10 8 2.6582 -3.9517 -5.0391 11 6 3.2099 -0.6664 -3.3147 12 6 2.7493 -0.0148 -2.1859 13 7 2.0184 -0.6906 1.1962 14 6 1.5560 -2.0473 1.4989 15 6 2.8930 -0.0776 2.0183 16 8 3.2774 1.0492 1.7668 17 6 3.3814 -0.7678 3.2132 18 1 3.0405 -1.7681 3.4362 19 6 4.2906 -0.1311 4.0672 20 7 4.7033 1.0789 3.7971 21 14 4.9132 -1.0116 5.5924 22 1 4.2977 -2.3607 5.6711 23 1 6.3904 -1.1445 5.5188 24 1 4.5461 -0.2293 6.8001 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.2196 -2.6021 -0.6551 29 1 2.0361 -3.7619 -2.6680 30 1 5.0812 -4.0962 -3.5617 31 1 5.6475 -3.9680 -5.2440 32 1 5.8032 -2.5771 -4.1440 33 1 3.7697 -0.1228 -4.0614 34 1 2.9491 1.0379 -2.0508 35 1 2.2168 -2.7712 1.0218 36 1 1.5657 -2.2024 2.5776 37 1 0.5416 -2.1780 1.1221 38 1 5.3327 1.5200 4.3887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356943940.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:47 Heat of formation + Delta-G solvation = -41.875972 kcal Electronic energy + Delta-G solvation = -21495.967480 eV Core-core repulsion = 18237.459366 eV Total energy + Delta-G solvation = -3258.508114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.50812 -37.54753 -35.75516 -34.75496 -32.52148 -31.71241 -30.75359 -29.27872 -28.74271 -26.24929 -26.03722 -23.35995 -22.49086 -21.04969 -18.91829 -18.06161 -16.64856 -16.57627 -15.82054 -15.41927 -15.07363 -14.86153 -14.42378 -14.24537 -14.07007 -13.72428 -13.49903 -13.24353 -12.94495 -12.67898 -12.39179 -12.22914 -11.99098 -11.89009 -11.62013 -11.53196 -11.27999 -11.07203 -10.97946 -10.81678 -10.49624 -10.30286 -10.21133 -10.10585 -8.91848 -8.88708 -8.74402 -8.39022 -7.64166 -7.32521 -6.25244 -4.70611 1.03404 1.59085 1.90738 2.66037 3.08575 3.17232 3.21237 3.71897 3.93764 4.06615 4.48770 4.55452 4.97107 5.05637 5.08637 5.13192 5.17286 5.53474 5.58754 5.67700 5.68074 5.78916 5.86126 5.86724 5.99915 6.07629 6.17036 6.29194 6.38130 6.39243 6.42057 6.53249 6.62567 6.89622 7.14336 7.39488 7.54369 8.07152 8.28527 8.96749 9.34003 10.50652 10.69314 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.003990 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.605440 B = 7015.194110 C = 7507.177262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.172 3.828 3 H 0.104 0.896 4 C -0.036 4.036 5 C -0.129 4.129 6 C -0.056 4.056 7 C -0.471 4.471 8 S 1.328 4.672 9 C -0.498 4.498 10 O -0.865 6.865 11 C -0.047 4.047 12 C -0.126 4.126 13 N -0.636 5.636 14 C 0.094 3.906 15 C 0.557 3.443 16 O -0.577 6.577 17 C -0.542 4.542 18 H 0.073 0.927 19 C 0.088 3.912 20 N -0.766 5.766 21 Si 0.906 3.094 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.275 1.275 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 -4.032 -15.303 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.067 3.933 3 H 0.122 0.878 4 C -0.038 4.038 5 C -0.148 4.148 6 C -0.075 4.075 7 C -0.569 4.569 8 S 1.526 4.474 9 C -0.654 4.654 10 O -0.860 6.860 11 C -0.066 4.066 12 C -0.146 4.146 13 N -0.374 5.374 14 C -0.050 4.050 15 C 0.364 3.636 16 O -0.459 6.459 17 C -0.578 4.578 18 H 0.091 0.909 19 C -0.132 4.132 20 N -0.394 5.394 21 Si 0.731 3.269 22 H -0.188 1.188 23 H -0.201 1.201 24 H -0.201 1.201 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.146 0.854 29 H 0.139 0.861 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.247 -3.399 -16.229 16.733 hybrid contribution 0.301 -1.894 2.825 3.414 sum -1.946 -5.293 -13.405 14.543 Atomic orbital electron populations 1.22124 0.95494 1.01736 1.01857 1.19682 0.92923 0.97871 0.82842 0.87806 1.20760 0.93681 0.94181 0.95149 1.21344 1.01222 0.94699 0.97525 1.21010 0.94497 0.99424 0.92612 1.27369 1.11454 1.02955 1.15119 1.69207 0.84485 0.98513 0.95224 1.27762 1.19599 1.09497 1.08570 1.93077 1.58309 1.54357 1.80300 1.20750 0.96574 0.92368 0.96897 1.21242 0.98615 1.00594 0.94145 1.48006 1.49409 1.15734 1.24242 1.21551 0.96812 0.84895 1.01716 1.18296 0.77113 0.85552 0.82685 1.90581 1.60155 1.19956 1.75238 1.21036 1.27297 1.02285 1.07191 0.90925 1.25732 0.94865 0.94347 0.98294 1.70021 1.23925 1.11355 1.34145 0.86337 0.78935 0.80246 0.81414 1.18757 1.20129 1.20079 0.91845 0.92380 0.92701 0.85432 0.86135 0.90021 0.87947 0.87058 0.84973 0.85326 0.94980 0.90767 0.93636 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.89 37.16 0.33 -2.08 16 2 C 0.17 3.31 2.95 -69.08 -0.20 3.10 16 3 H 0.10 2.24 6.66 -51.93 -0.35 1.89 16 4 C -0.04 -0.62 4.96 -104.63 -0.52 -1.14 16 5 C -0.13 -2.12 8.15 -39.59 -0.32 -2.44 16 6 C -0.06 -0.88 9.44 -39.58 -0.37 -1.26 16 7 C -0.47 -6.16 5.61 -39.58 -0.22 -6.38 16 8 S 1.33 12.63 14.19 -107.50 -1.53 11.11 16 9 C -0.50 -4.50 10.70 101.05 1.08 -3.41 16 10 O -0.86 -13.70 16.90 -35.23 -0.60 -14.29 16 11 C -0.05 -0.57 9.75 -39.58 -0.39 -0.95 16 12 C -0.13 -1.93 9.67 -39.58 -0.38 -2.32 16 13 N -0.64 -14.26 2.75 -176.93 -0.49 -14.74 16 14 C 0.09 1.76 8.05 59.85 0.48 2.25 16 15 C 0.56 15.65 7.61 -12.98 -0.10 15.55 16 16 O -0.58 -18.22 14.36 5.20 0.07 -18.15 16 17 C -0.54 -15.10 8.74 -35.63 -0.31 -15.41 16 18 H 0.07 1.87 5.98 -52.48 -0.31 1.55 16 19 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 20 N -0.77 -22.63 11.83 55.55 0.66 -21.97 16 21 Si 0.91 19.98 29.56 -169.99 -5.02 14.96 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.79 6.03 -51.93 -0.31 0.48 16 28 H 0.13 1.99 4.96 -52.49 -0.26 1.73 16 29 H 0.12 1.91 7.45 -52.49 -0.39 1.52 16 30 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.11 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 1.85 7.95 -52.49 -0.42 1.44 16 35 H 0.03 0.58 7.13 -51.93 -0.37 0.21 16 36 H 0.07 1.43 6.06 -51.93 -0.31 1.12 16 37 H 0.05 0.71 5.43 -51.93 -0.28 0.43 16 38 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -39.04 325.65 -7.69 -46.73 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.68 Total: 3.63 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -1.02 Total: -12.17 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.17 Total: -36.72 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.52 Total: -32.44 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 12.63 SS G_CDS: -1.53 Total: 11.11 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -39.04 -7.69 -46.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356943940.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.855 kcal (2) G-P(sol) polarization free energy of solvation -39.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds