Wall clock time and date at job start Tue Mar 31 2020 07:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47260 * 2 1 4 4 C 1.50702 * 109.47083 * 239.99868 * 2 1 3 5 5 C 1.38226 * 119.99831 * 295.55489 * 4 2 1 6 6 C 1.38239 * 120.00284 * 179.97438 * 5 4 2 7 7 C 1.38233 * 119.99509 * 0.09240 * 6 5 4 8 8 S 1.76201 * 120.00228 * 179.97438 * 7 6 5 9 9 C 1.81395 * 103.00063 * 269.86957 * 8 7 6 10 10 O 1.42108 * 102.99716 * 23.71727 * 8 7 6 11 11 C 1.38237 * 120.00256 * 359.83912 * 7 6 5 12 12 C 1.38233 * 119.99968 * 115.53616 * 4 2 1 13 13 N 1.46498 * 109.47194 * 119.99861 * 2 1 3 14 14 C 1.46500 * 120.00472 * 53.79321 * 13 2 1 15 15 C 1.34780 * 119.99898 * 233.79849 * 13 2 1 16 16 O 1.21688 * 120.00370 * 359.97438 * 15 13 2 17 17 C 1.46377 * 120.00178 * 180.02562 * 15 13 2 18 18 H 1.08009 * 119.99764 * 359.97438 * 17 15 13 19 19 C 1.40047 * 120.00352 * 179.97438 * 17 15 13 20 20 N 1.30664 * 119.99921 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99917 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47375 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47075 * 120.00217 * 21 19 17 24 24 H 1.48504 * 109.46856 * 239.99749 * 21 19 17 25 25 H 1.08998 * 109.46751 * 300.00052 * 1 2 3 26 26 H 1.08997 * 109.47199 * 60.00258 * 1 2 3 27 27 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00169 * 359.70116 * 5 4 2 29 29 H 1.08000 * 120.00554 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.47771 * 59.99505 * 9 8 7 31 31 H 1.09001 * 109.47175 * 179.97438 * 9 8 7 32 32 H 1.08999 * 109.46797 * 299.99668 * 9 8 7 33 33 H 1.08001 * 120.00271 * 180.10987 * 11 7 6 34 34 H 1.08002 * 120.00087 * 359.97327 * 12 4 2 35 35 H 1.09003 * 109.46939 * 89.37381 * 14 13 2 36 36 H 1.08990 * 109.47665 * 209.37705 * 14 13 2 37 37 H 1.08999 * 109.46875 * 329.38048 * 14 13 2 38 38 H 0.96998 * 120.00185 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7758 -2.0576 -1.4038 6 6 2.2361 -2.7093 -2.5327 7 6 2.9546 -2.0140 -3.4873 8 16 3.5419 -2.8446 -4.9260 9 6 5.1821 -3.4298 -4.4183 10 8 2.6582 -3.9517 -5.0391 11 6 3.2099 -0.6664 -3.3147 12 6 2.7493 -0.0148 -2.1859 13 7 2.0184 -0.6906 1.1962 14 6 1.5560 -2.0473 1.4989 15 6 2.8930 -0.0776 2.0183 16 8 3.2774 1.0492 1.7668 17 6 3.3814 -0.7678 3.2132 18 1 3.0405 -1.7681 3.4362 19 6 4.2906 -0.1311 4.0672 20 7 4.7033 1.0789 3.7971 21 14 4.9132 -1.0116 5.5924 22 1 4.2977 -2.3607 5.6711 23 1 6.3904 -1.1445 5.5188 24 1 4.5461 -0.2293 6.8001 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.2196 -2.6021 -0.6551 29 1 2.0361 -3.7619 -2.6680 30 1 5.0812 -4.0962 -3.5617 31 1 5.6475 -3.9680 -5.2440 32 1 5.8032 -2.5771 -4.1440 33 1 3.7697 -0.1228 -4.0614 34 1 2.9491 1.0379 -2.0508 35 1 2.2168 -2.7712 1.0218 36 1 1.5657 -2.2024 2.5776 37 1 0.5416 -2.1780 1.1221 38 1 5.3327 1.5200 4.3887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356943940.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:46 Heat of formation + Delta-G solvation = -70.316126 kcal Electronic energy + Delta-G solvation = -21497.200738 eV Core-core repulsion = 18237.459366 eV Total energy + Delta-G solvation = -3259.741372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.88291 -39.26649 -36.86317 -36.52540 -34.64565 -33.22934 -31.93492 -30.48701 -29.56519 -28.28548 -27.65188 -24.73951 -23.66821 -22.64895 -20.58931 -19.05636 -18.54626 -17.82012 -17.60478 -16.83243 -16.51524 -15.87152 -15.85271 -15.72807 -15.52804 -14.98484 -14.62609 -14.45259 -14.29868 -14.01588 -13.76369 -13.53215 -13.33390 -13.29232 -13.18558 -12.95217 -12.83267 -12.79887 -12.43961 -12.31788 -12.04989 -11.98749 -11.84013 -11.27975 -10.97304 -10.09054 -9.89980 -9.78272 -9.34463 -9.14651 -8.31815 -6.87621 -0.06825 0.42805 1.00440 1.36201 1.36899 1.53926 1.79448 2.20315 2.42171 2.58068 2.90167 3.03664 3.53978 3.75208 3.83874 4.05305 4.22949 4.29326 4.31879 4.38712 4.46308 4.48455 4.59892 4.74965 4.77591 4.85783 4.89367 4.94497 5.08320 5.15277 5.17355 5.26618 5.33885 5.34664 5.61264 5.73847 5.98826 6.09604 6.37410 6.84831 7.35743 8.43131 8.63853 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.003990 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.605440 B = 7015.194110 C = 7507.177262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.170 3.830 3 H 0.069 0.931 4 C -0.060 4.060 5 C -0.138 4.138 6 C -0.076 4.076 7 C -0.477 4.477 8 S 1.412 4.588 9 C -0.501 4.501 10 O -0.924 6.924 11 C -0.031 4.031 12 C -0.145 4.145 13 N -0.638 5.638 14 C 0.095 3.905 15 C 0.540 3.460 16 O -0.627 6.627 17 C -0.569 4.569 18 H 0.089 0.911 19 C 0.031 3.969 20 N -0.818 5.818 21 Si 0.993 3.007 22 H -0.249 1.249 23 H -0.269 1.269 24 H -0.267 1.267 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.129 0.871 29 H 0.113 0.887 30 H 0.056 0.944 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.189 0.811 34 H 0.129 0.871 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.462 -5.406 -16.509 17.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.065 3.935 3 H 0.087 0.913 4 C -0.062 4.062 5 C -0.158 4.158 6 C -0.095 4.095 7 C -0.572 4.572 8 S 1.610 4.390 9 C -0.658 4.658 10 O -0.920 6.920 11 C -0.049 4.049 12 C -0.164 4.164 13 N -0.373 5.373 14 C -0.048 4.048 15 C 0.347 3.653 16 O -0.514 6.514 17 C -0.606 4.606 18 H 0.107 0.893 19 C -0.184 4.184 20 N -0.448 5.448 21 Si 0.812 3.188 22 H -0.172 1.172 23 H -0.194 1.194 24 H -0.192 1.192 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.147 0.853 29 H 0.131 0.869 30 H 0.075 0.925 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.206 0.794 34 H 0.147 0.853 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.647 -4.801 -17.454 18.177 hybrid contribution 0.133 -1.480 3.036 3.380 sum -1.514 -6.281 -14.417 15.799 Atomic orbital electron populations 1.22035 0.92795 1.02875 1.02436 1.19769 0.95012 0.95991 0.82705 0.91255 1.20605 0.95739 0.94708 0.95129 1.21329 1.01903 0.94345 0.98178 1.21110 0.95728 0.99373 0.93330 1.27962 1.10174 1.03647 1.15441 1.68532 0.82829 0.95817 0.91848 1.27798 1.19258 1.10283 1.08496 1.92956 1.61128 1.56854 1.81040 1.21306 0.95066 0.92027 0.96531 1.21510 0.98762 1.00995 0.95175 1.47829 1.48178 1.16809 1.24500 1.21667 0.98690 0.82976 1.01474 1.18638 0.77785 0.85243 0.83674 1.90527 1.62230 1.21995 1.76648 1.21545 1.28015 1.03212 1.07800 0.89302 1.26934 0.94532 0.94969 1.01999 1.70180 1.24942 1.13556 1.36098 0.85044 0.78324 0.79239 0.76179 1.17201 1.19370 1.19159 0.92925 0.90116 0.91148 0.85301 0.86885 0.92470 0.85613 0.84726 0.79402 0.85270 0.94542 0.91499 0.90280 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 8.89 71.98 0.64 -3.84 16 2 C 0.17 6.73 2.95 44.25 0.13 6.86 16 3 H 0.07 3.20 6.66 -2.39 -0.02 3.18 16 4 C -0.06 -2.10 4.96 -19.87 -0.10 -2.20 16 5 C -0.14 -4.52 8.15 22.27 0.18 -4.34 16 6 C -0.08 -2.34 9.44 22.27 0.21 -2.13 16 7 C -0.48 -11.41 5.61 22.27 0.12 -11.29 16 8 S 1.41 22.82 14.19 -56.49 -0.80 22.02 16 9 C -0.50 -7.40 10.70 113.37 1.21 -6.18 16 10 O -0.92 -27.80 16.90 -148.98 -2.52 -30.32 16 11 C -0.03 -0.66 9.75 22.27 0.22 -0.45 16 12 C -0.14 -4.35 9.67 22.27 0.22 -4.13 16 13 N -0.64 -29.37 2.75 -831.89 -2.29 -31.66 16 14 C 0.09 3.54 8.05 127.77 1.03 4.57 16 15 C 0.54 31.60 7.61 86.36 0.66 32.25 16 16 O -0.63 -41.82 14.36 -4.31 -0.06 -41.88 16 17 C -0.57 -32.44 8.74 24.83 0.22 -32.22 16 18 H 0.09 4.59 5.98 -2.91 -0.02 4.57 16 19 C 0.03 1.73 5.50 85.31 0.47 2.20 16 20 N -0.82 -49.93 11.83 21.83 0.26 -49.68 16 21 Si 0.99 41.12 29.56 68.60 2.03 43.15 16 22 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.07 1.95 6.03 -2.39 -0.01 1.94 16 28 H 0.13 3.99 4.96 -2.91 -0.01 3.98 16 29 H 0.11 3.58 7.45 -2.91 -0.02 3.56 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.13 1.42 8.14 -2.39 -0.02 1.41 16 33 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.13 3.77 7.95 -2.91 -0.02 3.74 16 35 H 0.04 1.32 7.13 -2.39 -0.02 1.31 16 36 H 0.07 2.57 6.06 -2.39 -0.01 2.56 16 37 H 0.08 2.38 5.43 -2.39 -0.01 2.37 16 38 H 0.27 15.11 8.29 -92.71 -0.77 14.34 16 Total: -1.00 -89.91 325.65 2.90 -87.00 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 1.08 Total: 22.26 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 5.21 Total: -20.90 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -2.03 Total: -81.34 kcal Atomic # 8 Polarization: -69.62 SS G_CDS: -2.58 Total: -72.20 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: 22.82 SS G_CDS: -0.80 Total: 22.02 kcal Total: -89.91 2.90 -87.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356943940.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.687 kcal (2) G-P(sol) polarization free energy of solvation -89.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds