Wall clock time and date at job start Tue Mar 31 2020 07:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47155 * 2 1 4 4 C 1.50699 * 109.47370 * 120.00282 * 2 1 3 5 5 C 1.38231 * 119.99949 * 268.30747 * 4 2 1 6 6 C 1.38239 * 119.99679 * 180.02562 * 5 4 2 7 7 C 1.38232 * 120.00252 * 0.24483 * 6 5 4 8 8 S 1.76195 * 120.00065 * 179.72637 * 7 6 5 9 9 C 1.81397 * 103.00005 * 90.00588 * 8 7 6 10 10 O 1.42099 * 103.00341 * 203.85836 * 8 7 6 11 11 C 1.38234 * 119.99990 * 359.49751 * 7 6 5 12 12 C 1.38235 * 119.99658 * 0.50887 * 11 7 6 13 13 N 1.46498 * 109.46676 * 240.00337 * 2 1 3 14 14 C 1.46502 * 120.00341 * 319.77922 * 13 2 1 15 15 C 1.34776 * 119.99866 * 139.78565 * 13 2 1 16 16 O 1.21680 * 120.00150 * 359.97438 * 15 13 2 17 17 C 1.46378 * 119.99906 * 179.97438 * 15 13 2 18 18 H 1.08002 * 120.00405 * 359.97438 * 17 15 13 19 19 C 1.40050 * 119.99915 * 179.97438 * 17 15 13 20 20 N 1.30665 * 120.00064 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 119.99787 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47035 * 60.00052 * 21 19 17 23 23 H 1.48505 * 109.46991 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47435 * 299.99746 * 21 19 17 25 25 H 1.08994 * 109.47419 * 59.99651 * 1 2 3 26 26 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46628 * 299.99821 * 1 2 3 28 28 H 1.07994 * 120.00195 * 359.97438 * 5 4 2 29 29 H 1.08001 * 119.99598 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.47514 * 59.99874 * 9 8 7 31 31 H 1.08995 * 109.47479 * 180.02562 * 9 8 7 32 32 H 1.09005 * 109.47075 * 300.00036 * 9 8 7 33 33 H 1.07997 * 120.00205 * 180.22816 * 11 7 6 34 34 H 1.08001 * 120.00027 * 179.72608 * 12 11 7 35 35 H 1.08998 * 109.47216 * 95.74037 * 14 13 2 36 36 H 1.08997 * 109.47445 * 215.74553 * 14 13 2 37 37 H 1.09000 * 109.46820 * 335.74809 * 14 13 2 38 38 H 0.97003 * 120.00184 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.2961 0.0059 2.3828 6 6 2.7575 -0.6458 3.5113 7 6 2.9599 -2.0130 3.4858 8 16 3.5548 -2.8425 4.9219 9 6 2.0295 -3.2911 5.7952 10 8 4.1569 -4.0138 4.3882 11 6 2.6911 -2.7301 2.3350 12 6 2.2299 -2.0784 1.2065 13 7 2.0182 -0.6905 -1.1962 14 6 1.3490 -1.9068 -1.6644 15 6 3.0831 -0.2070 -1.8660 16 8 3.6388 0.8033 -1.4773 17 6 3.5713 -0.8973 -3.0609 18 1 3.0784 -1.7943 -3.4057 19 6 4.6776 -0.3945 -3.7572 20 7 5.2737 0.6910 -3.3404 21 14 5.3010 -1.2759 -5.2817 22 1 4.2240 -1.3200 -6.3031 23 1 6.4731 -0.5474 -5.8301 24 1 5.7012 -2.6606 -4.9241 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 2.1426 1.0747 2.4014 29 1 2.9639 -0.0861 4.4116 30 1 1.4232 -3.9365 5.1596 31 1 2.2795 -3.8184 6.7158 32 1 1.4691 -2.3875 6.0353 33 1 2.8457 -3.7988 2.3161 34 1 2.0240 -2.6380 0.3059 35 1 0.6272 -1.6489 -2.4394 36 1 2.0894 -2.5950 -2.0720 37 1 0.8323 -2.3812 -0.8301 38 1 6.0397 1.0394 -3.8229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356943942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:51 Heat of formation + Delta-G solvation = -39.427663 kcal Electronic energy + Delta-G solvation = -21534.968860 eV Core-core repulsion = 18276.566912 eV Total energy + Delta-G solvation = -3258.401947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.47368 -37.51098 -35.71479 -34.74680 -32.48264 -31.74049 -30.63283 -29.28806 -28.75582 -26.22357 -26.05986 -23.24916 -22.49642 -21.01801 -18.89512 -18.02723 -16.61284 -16.57101 -15.76854 -15.35803 -15.11637 -14.84690 -14.47167 -14.24089 -14.04826 -13.71297 -13.32597 -13.14111 -13.02480 -12.50517 -12.41791 -12.32215 -11.99539 -11.90904 -11.68301 -11.49197 -11.25158 -11.09395 -10.94064 -10.71013 -10.56166 -10.30455 -10.21873 -10.09349 -8.87328 -8.79454 -8.69197 -8.31600 -7.63221 -7.31634 -6.21516 -4.67287 1.09279 1.64905 1.93381 2.70565 3.14512 3.19581 3.21098 3.77244 4.00184 4.08009 4.49394 4.52319 5.01771 5.02995 5.10703 5.15468 5.18417 5.54707 5.63076 5.66289 5.71704 5.77742 5.79732 5.87429 5.97762 6.08165 6.15917 6.29709 6.34136 6.42561 6.47107 6.54316 6.64951 6.93410 7.20468 7.41896 7.55460 8.09047 8.30894 8.99845 9.36697 10.54370 10.73018 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.004116 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.941345 B = 6800.864627 C = 7382.489916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.175 3.825 3 H 0.101 0.899 4 C -0.035 4.035 5 C -0.133 4.133 6 C -0.047 4.047 7 C -0.473 4.473 8 S 1.329 4.671 9 C -0.499 4.499 10 O -0.861 6.861 11 C -0.055 4.055 12 C -0.127 4.127 13 N -0.640 5.640 14 C 0.097 3.903 15 C 0.557 3.443 16 O -0.575 6.575 17 C -0.542 4.542 18 H 0.071 0.929 19 C 0.088 3.912 20 N -0.766 5.766 21 Si 0.907 3.093 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.268 1.268 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.050 -2.937 15.967 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.070 3.930 3 H 0.119 0.881 4 C -0.036 4.036 5 C -0.152 4.152 6 C -0.066 4.066 7 C -0.571 4.571 8 S 1.527 4.473 9 C -0.656 4.656 10 O -0.857 6.857 11 C -0.074 4.074 12 C -0.146 4.146 13 N -0.378 5.378 14 C -0.047 4.047 15 C 0.364 3.636 16 O -0.458 6.458 17 C -0.579 4.579 18 H 0.089 0.911 19 C -0.132 4.132 20 N -0.394 5.394 21 Si 0.731 3.269 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.193 1.193 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.150 0.850 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.655 -2.448 16.401 17.869 hybrid contribution -1.175 -1.784 -2.217 3.079 sum -7.830 -4.232 14.184 16.745 Atomic orbital electron populations 1.22075 0.94864 1.01923 1.01914 1.19642 0.92817 0.97546 0.83043 0.88133 1.20853 0.93378 0.94044 0.95363 1.21119 1.01098 1.00003 0.93004 1.20704 0.95478 0.92244 0.98215 1.27349 1.14741 1.02526 1.12449 1.69280 0.87136 0.97776 0.93117 1.27788 1.19148 1.08607 1.10017 1.93103 1.65416 1.49683 1.77462 1.21039 0.94221 0.99612 0.92555 1.21433 0.99998 0.94769 0.98374 1.48043 1.34325 1.27863 1.27570 1.21506 0.97207 0.88434 0.97600 1.18259 0.77520 0.84339 0.83520 1.90588 1.58045 1.27197 1.69951 1.20950 1.14698 1.11925 1.10281 0.91085 1.25729 0.95570 0.94161 0.97780 1.70003 1.16251 1.17492 1.35690 0.86452 0.78629 0.80090 0.81724 1.19246 1.20497 1.19260 0.91812 0.92613 0.92270 0.85581 0.85064 0.90216 0.88045 0.87274 0.86177 0.84981 0.94595 0.91415 0.93401 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.81 37.16 0.33 -1.89 16 2 C 0.17 3.35 2.78 -69.08 -0.19 3.15 16 3 H 0.10 2.16 7.07 -51.93 -0.37 1.79 16 4 C -0.03 -0.62 5.01 -104.62 -0.52 -1.14 16 5 C -0.13 -2.00 9.70 -39.58 -0.38 -2.38 16 6 C -0.05 -0.58 9.75 -39.58 -0.39 -0.97 16 7 C -0.47 -6.49 5.61 -39.58 -0.22 -6.71 16 8 S 1.33 13.35 14.19 -107.50 -1.53 11.83 16 9 C -0.50 -4.05 10.70 101.05 1.08 -2.97 16 10 O -0.86 -14.64 16.91 -35.23 -0.60 -15.23 16 11 C -0.06 -0.93 9.44 -39.58 -0.37 -1.30 16 12 C -0.13 -2.27 9.00 -39.58 -0.36 -2.63 16 13 N -0.64 -14.31 2.46 -176.93 -0.44 -14.75 16 14 C 0.10 1.78 7.57 59.85 0.45 2.23 16 15 C 0.56 15.80 7.61 -12.99 -0.10 15.70 16 16 O -0.58 -18.47 14.46 5.21 0.08 -18.39 16 17 C -0.54 -15.27 8.73 -35.63 -0.31 -15.58 16 18 H 0.07 1.83 6.12 -52.49 -0.32 1.51 16 19 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 20 N -0.77 -22.99 11.83 55.55 0.66 -22.34 16 21 Si 0.91 20.31 29.56 -169.99 -5.02 15.28 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.77 6.71 -51.93 -0.35 0.42 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 29 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.11 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.12 2.06 7.46 -52.49 -0.39 1.67 16 34 H 0.13 2.37 4.60 -52.49 -0.24 2.12 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.30 6.43 -51.93 -0.33 0.97 16 37 H 0.05 0.74 5.09 -51.93 -0.26 0.47 16 38 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -39.97 327.70 -7.78 -47.74 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.78 Total: 3.05 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.08 Total: -12.13 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.22 Total: -37.09 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.52 Total: -33.63 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 13.35 SS G_CDS: -1.53 Total: 11.83 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -39.97 -7.78 -47.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356943942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.317 kcal (2) G-P(sol) polarization free energy of solvation -39.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds