Wall clock time and date at job start Tue Mar 31 2020 07:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47155 * 2 1 4 4 C 1.50699 * 109.47370 * 120.00282 * 2 1 3 5 5 C 1.38231 * 119.99949 * 268.30747 * 4 2 1 6 6 C 1.38239 * 119.99679 * 180.02562 * 5 4 2 7 7 C 1.38232 * 120.00252 * 0.24483 * 6 5 4 8 8 S 1.76195 * 120.00065 * 179.72637 * 7 6 5 9 9 C 1.81397 * 103.00005 * 90.00588 * 8 7 6 10 10 O 1.42099 * 103.00341 * 203.85836 * 8 7 6 11 11 C 1.38234 * 119.99990 * 359.49751 * 7 6 5 12 12 C 1.38235 * 119.99658 * 0.50887 * 11 7 6 13 13 N 1.46498 * 109.46676 * 240.00337 * 2 1 3 14 14 C 1.46502 * 120.00341 * 319.77922 * 13 2 1 15 15 C 1.34776 * 119.99866 * 139.78565 * 13 2 1 16 16 O 1.21680 * 120.00150 * 359.97438 * 15 13 2 17 17 C 1.46378 * 119.99906 * 179.97438 * 15 13 2 18 18 H 1.08002 * 120.00405 * 359.97438 * 17 15 13 19 19 C 1.40050 * 119.99915 * 179.97438 * 17 15 13 20 20 N 1.30665 * 120.00064 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 119.99787 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47035 * 60.00052 * 21 19 17 23 23 H 1.48505 * 109.46991 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47435 * 299.99746 * 21 19 17 25 25 H 1.08994 * 109.47419 * 59.99651 * 1 2 3 26 26 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46628 * 299.99821 * 1 2 3 28 28 H 1.07994 * 120.00195 * 359.97438 * 5 4 2 29 29 H 1.08001 * 119.99598 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.47514 * 59.99874 * 9 8 7 31 31 H 1.08995 * 109.47479 * 180.02562 * 9 8 7 32 32 H 1.09005 * 109.47075 * 300.00036 * 9 8 7 33 33 H 1.07997 * 120.00205 * 180.22816 * 11 7 6 34 34 H 1.08001 * 120.00027 * 179.72608 * 12 11 7 35 35 H 1.08998 * 109.47216 * 95.74037 * 14 13 2 36 36 H 1.08997 * 109.47445 * 215.74553 * 14 13 2 37 37 H 1.09000 * 109.46820 * 335.74809 * 14 13 2 38 38 H 0.97003 * 120.00184 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.2961 0.0059 2.3828 6 6 2.7575 -0.6458 3.5113 7 6 2.9599 -2.0130 3.4858 8 16 3.5548 -2.8425 4.9219 9 6 2.0295 -3.2911 5.7952 10 8 4.1569 -4.0138 4.3882 11 6 2.6911 -2.7301 2.3350 12 6 2.2299 -2.0784 1.2065 13 7 2.0182 -0.6905 -1.1962 14 6 1.3490 -1.9068 -1.6644 15 6 3.0831 -0.2070 -1.8660 16 8 3.6388 0.8033 -1.4773 17 6 3.5713 -0.8973 -3.0609 18 1 3.0784 -1.7943 -3.4057 19 6 4.6776 -0.3945 -3.7572 20 7 5.2737 0.6910 -3.3404 21 14 5.3010 -1.2759 -5.2817 22 1 4.2240 -1.3200 -6.3031 23 1 6.4731 -0.5474 -5.8301 24 1 5.7012 -2.6606 -4.9241 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 2.1426 1.0747 2.4014 29 1 2.9639 -0.0861 4.4116 30 1 1.4232 -3.9365 5.1596 31 1 2.2795 -3.8184 6.7158 32 1 1.4691 -2.3875 6.0353 33 1 2.8457 -3.7988 2.3161 34 1 2.0240 -2.6380 0.3059 35 1 0.6272 -1.6489 -2.4394 36 1 2.0894 -2.5950 -2.0720 37 1 0.8323 -2.3812 -0.8301 38 1 6.0397 1.0394 -3.8229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356943942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:50 Heat of formation + Delta-G solvation = -68.980529 kcal Electronic energy + Delta-G solvation = -21536.250368 eV Core-core repulsion = 18276.566912 eV Total energy + Delta-G solvation = -3259.683456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.88018 -39.23387 -36.87442 -36.54099 -34.64294 -33.24879 -31.85482 -30.47903 -29.53501 -28.26765 -27.68785 -24.63192 -23.70758 -22.63676 -20.57842 -19.06182 -18.53984 -17.77626 -17.66431 -16.77575 -16.59660 -15.93312 -15.81302 -15.72526 -15.54328 -14.79636 -14.57853 -14.36270 -14.30602 -14.14259 -13.57370 -13.55072 -13.41238 -13.35005 -13.17073 -12.89563 -12.82288 -12.76334 -12.47228 -12.32148 -12.10213 -11.98115 -11.89629 -11.24885 -10.94917 -10.02112 -9.89594 -9.80075 -9.30329 -9.15374 -8.31741 -6.87686 -0.02939 0.44310 1.00374 1.35421 1.38703 1.49932 1.82226 2.19884 2.42518 2.61895 2.85208 3.03875 3.53851 3.82785 3.86340 4.06764 4.24822 4.31353 4.33950 4.35869 4.49191 4.53570 4.64315 4.71239 4.80004 4.88371 4.92154 4.97742 5.08578 5.17474 5.19312 5.28819 5.31417 5.37929 5.62477 5.72527 6.01998 6.09232 6.39498 6.84401 7.36228 8.43773 8.64032 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.004116 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.941345 B = 6800.864627 C = 7382.489916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.172 3.828 3 H 0.067 0.933 4 C -0.061 4.061 5 C -0.144 4.144 6 C -0.030 4.030 7 C -0.478 4.478 8 S 1.400 4.600 9 C -0.493 4.493 10 O -0.932 6.932 11 C -0.080 4.080 12 C -0.149 4.149 13 N -0.640 5.640 14 C 0.097 3.903 15 C 0.541 3.459 16 O -0.627 6.627 17 C -0.571 4.571 18 H 0.088 0.912 19 C 0.030 3.970 20 N -0.819 5.819 21 Si 0.992 3.008 22 H -0.252 1.252 23 H -0.272 1.272 24 H -0.259 1.259 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.143 0.857 29 H 0.194 0.806 30 H 0.059 0.941 31 H 0.123 0.877 32 H 0.144 0.856 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.125 -3.474 17.833 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.067 3.933 3 H 0.085 0.915 4 C -0.062 4.062 5 C -0.163 4.163 6 C -0.049 4.049 7 C -0.573 4.573 8 S 1.598 4.402 9 C -0.651 4.651 10 O -0.928 6.928 11 C -0.099 4.099 12 C -0.168 4.168 13 N -0.376 5.376 14 C -0.046 4.046 15 C 0.347 3.653 16 O -0.514 6.514 17 C -0.607 4.607 18 H 0.106 0.894 19 C -0.185 4.185 20 N -0.448 5.448 21 Si 0.812 3.188 22 H -0.176 1.176 23 H -0.197 1.197 24 H -0.183 1.183 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.161 0.839 29 H 0.211 0.789 30 H 0.079 0.921 31 H 0.142 0.858 32 H 0.162 0.838 33 H 0.123 0.877 34 H 0.139 0.861 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.783 -3.006 18.259 20.075 hybrid contribution -0.934 -1.628 -2.571 3.184 sum -8.717 -4.634 15.688 18.536 Atomic orbital electron populations 1.21988 0.91450 1.03048 1.03030 1.19783 0.95455 0.95530 0.82525 0.91471 1.20783 0.95448 0.94092 0.95891 1.21500 1.00805 1.00977 0.93013 1.21358 0.92470 0.91728 0.99337 1.27927 1.13040 1.03554 1.12784 1.68411 0.86811 0.95118 0.89811 1.27721 1.17242 1.10241 1.09890 1.92979 1.68925 1.52657 1.78210 1.21069 0.95771 0.99268 0.93814 1.21379 1.01706 0.95064 0.98620 1.47835 1.33069 1.28659 1.28064 1.21626 0.96959 0.86877 0.99134 1.18591 0.78622 0.83938 0.84170 1.90528 1.60205 1.29283 1.71429 1.21488 1.15595 1.12748 1.10902 0.89375 1.26950 0.95351 0.94725 1.01524 1.70174 1.17121 1.19684 1.37842 0.85152 0.78321 0.78624 0.76724 1.17587 1.19699 1.18309 0.92320 0.91365 0.89491 0.83887 0.78941 0.92144 0.85812 0.83806 0.87680 0.86147 0.93280 0.92609 0.90332 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 8.81 71.98 0.63 -3.33 16 2 C 0.17 6.74 2.78 44.24 0.12 6.86 16 3 H 0.07 3.05 7.07 -2.39 -0.02 3.04 16 4 C -0.06 -2.18 5.01 -19.87 -0.10 -2.28 16 5 C -0.14 -4.12 9.70 22.27 0.22 -3.90 16 6 C -0.03 -0.65 9.75 22.27 0.22 -0.43 16 7 C -0.48 -12.23 5.61 22.27 0.12 -12.10 16 8 S 1.40 24.65 14.19 -56.49 -0.80 23.85 16 9 C -0.49 -6.04 10.70 113.37 1.21 -4.83 16 10 O -0.93 -31.28 16.91 -148.98 -2.52 -33.79 16 11 C -0.08 -2.73 9.44 22.27 0.21 -2.52 16 12 C -0.15 -5.48 9.00 22.27 0.20 -5.27 16 13 N -0.64 -29.66 2.46 -831.92 -2.05 -31.71 16 14 C 0.10 3.61 7.57 127.77 0.97 4.57 16 15 C 0.54 32.12 7.61 86.36 0.66 32.78 16 16 O -0.63 -42.61 14.46 -4.28 -0.06 -42.68 16 17 C -0.57 -33.17 8.73 24.83 0.22 -32.96 16 18 H 0.09 4.62 6.12 -2.91 -0.02 4.60 16 19 C 0.03 1.71 5.50 85.31 0.47 2.17 16 20 N -0.82 -51.07 11.83 21.84 0.26 -50.81 16 21 Si 0.99 42.19 29.56 68.60 2.03 44.22 16 22 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 24 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 25 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.07 1.78 6.71 -2.39 -0.02 1.77 16 27 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 28 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 29 H 0.19 1.67 8.06 -2.91 -0.02 1.64 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.12 1.08 8.14 -2.39 -0.02 1.07 16 32 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.11 3.80 7.46 -2.91 -0.02 3.78 16 34 H 0.12 4.51 4.60 -2.91 -0.01 4.49 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 2.19 6.43 -2.39 -0.02 2.17 16 37 H 0.08 2.42 5.09 -2.39 -0.01 2.41 16 38 H 0.27 15.53 8.29 -92.71 -0.77 14.76 16 Total: -1.00 -94.30 327.70 3.08 -91.22 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 1.08 Total: 20.94 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 5.15 Total: -21.24 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -1.79 Total: -82.52 kcal Atomic # 8 Polarization: -73.89 SS G_CDS: -2.58 Total: -76.47 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 24.65 SS G_CDS: -0.80 Total: 23.85 kcal Total: -94.30 3.08 -91.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356943942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.241 kcal (2) G-P(sol) polarization free energy of solvation -94.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds