Wall clock time and date at job start Tue Mar 31 2020 07:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47105 * 2 1 4 4 C 1.50696 * 109.47053 * 120.00020 * 2 1 3 5 5 C 1.38239 * 120.00080 * 89.09246 * 4 2 1 6 6 C 1.38237 * 120.00054 * 180.20870 * 5 4 2 7 7 C 1.38237 * 119.99631 * 359.53724 * 6 5 4 8 8 S 1.76196 * 119.99579 * 180.25466 * 7 6 5 9 9 C 1.81399 * 103.00143 * 89.99598 * 8 7 6 10 10 O 1.42099 * 103.00064 * 336.14389 * 8 7 6 11 11 C 1.38233 * 120.00133 * 0.27194 * 7 6 5 12 12 C 1.38235 * 120.00232 * 359.95647 * 11 7 6 13 13 N 1.46498 * 109.46998 * 240.00220 * 2 1 3 14 14 C 1.46505 * 119.99795 * 319.55771 * 13 2 1 15 15 C 1.34777 * 120.00165 * 139.55704 * 13 2 1 16 16 O 1.21686 * 120.00012 * 359.97438 * 15 13 2 17 17 C 1.46381 * 120.00038 * 180.02562 * 15 13 2 18 18 H 1.07998 * 119.99944 * 359.97438 * 17 15 13 19 19 C 1.40048 * 119.99941 * 180.02562 * 17 15 13 20 20 N 1.30671 * 119.99815 * 359.97438 * 19 17 15 21 21 Si 1.86794 * 119.99937 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47074 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47096 * 119.99651 * 21 19 17 24 24 H 1.48501 * 109.47251 * 239.99866 * 21 19 17 25 25 H 1.09001 * 109.47105 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46871 * 299.99687 * 1 2 3 27 27 H 1.09000 * 109.47237 * 60.00013 * 1 2 3 28 28 H 1.08007 * 119.99571 * 0.02562 * 5 4 2 29 29 H 1.07994 * 119.99818 * 179.80317 * 6 5 4 30 30 H 1.09002 * 109.47010 * 60.00090 * 9 8 7 31 31 H 1.09007 * 109.47288 * 179.97438 * 9 8 7 32 32 H 1.08994 * 109.47420 * 299.99523 * 9 8 7 33 33 H 1.07996 * 119.99660 * 179.97438 * 11 7 6 34 34 H 1.07996 * 120.00351 * 180.02562 * 12 11 7 35 35 H 1.08995 * 109.47315 * 95.71464 * 14 13 2 36 36 H 1.09010 * 109.46829 * 215.70815 * 14 13 2 37 37 H 1.08993 * 109.47003 * 335.70557 * 14 13 2 38 38 H 0.96996 * 120.00144 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.2449 -2.0760 1.2018 6 6 2.7015 -2.7284 2.3318 7 6 2.9548 -2.0135 3.4875 8 16 3.5432 -2.8440 4.9258 9 6 5.3452 -2.7718 4.7302 10 8 3.0985 -4.1791 4.7284 11 6 2.7460 -0.6473 3.5150 12 6 2.2849 0.0043 2.3864 13 7 2.0183 -0.6906 -1.1962 14 6 1.3521 -1.9095 -1.6615 15 6 3.0805 -0.2045 -1.8686 16 8 3.6336 0.8083 -1.4824 17 6 3.5680 -0.8942 -3.0641 18 1 3.0769 -1.7928 -3.4072 19 6 4.6720 -0.3894 -3.7625 20 7 5.2665 0.6976 -3.3471 21 14 5.2946 -1.2699 -5.2877 22 1 4.4550 -2.4673 -5.5453 23 1 5.2208 -0.3529 -6.4535 24 1 6.7032 -1.6898 -5.0766 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 2.0513 -2.6338 0.2973 29 1 2.8645 -3.7957 2.3103 30 1 5.6646 -1.7305 4.6876 31 1 5.8227 -3.2635 5.5778 32 1 5.6312 -3.2776 3.8080 33 1 2.9435 -0.0890 4.4181 34 1 2.1222 1.0717 2.4078 35 1 0.6277 -1.6550 -2.4352 36 1 2.0940 -2.5957 -2.0701 37 1 0.8391 -2.3849 -0.8256 38 1 6.0309 1.0475 -3.8310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356943944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:53 Heat of formation + Delta-G solvation = -69.144515 kcal Electronic energy + Delta-G solvation = -21569.011814 eV Core-core repulsion = 18309.321247 eV Total energy + Delta-G solvation = -3259.690567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88440 -39.23805 -36.87560 -36.54379 -34.65287 -33.25236 -31.85530 -30.48077 -29.57766 -28.27806 -27.68830 -24.63780 -23.70851 -22.63961 -20.58261 -19.06234 -18.54802 -17.78891 -17.67058 -16.78222 -16.59626 -15.94211 -15.79208 -15.73991 -15.54931 -14.79153 -14.63512 -14.36217 -14.29979 -14.12327 -13.76211 -13.50621 -13.37193 -13.31263 -13.18489 -12.92108 -12.84788 -12.82095 -12.45399 -12.31685 -12.06069 -11.97477 -11.91158 -11.27385 -10.98502 -9.99933 -9.89815 -9.81267 -9.35622 -9.14709 -8.33167 -6.88663 -0.04270 0.44456 1.01751 1.34381 1.34956 1.52057 1.79273 2.18794 2.41416 2.62103 2.83360 3.01996 3.53002 3.82598 3.86197 4.06505 4.24167 4.29796 4.31703 4.34333 4.46994 4.50392 4.63046 4.71066 4.79967 4.88143 4.92023 4.97647 5.08567 5.15852 5.17587 5.28484 5.31055 5.37624 5.62203 5.71735 6.01752 6.08875 6.38941 6.83663 7.35523 8.42841 8.63081 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.017936 B = 0.004270 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.710177 B = 6555.535583 C = 7197.481918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.172 3.828 3 H 0.068 0.932 4 C -0.060 4.060 5 C -0.149 4.149 6 C -0.079 4.079 7 C -0.481 4.481 8 S 1.417 4.583 9 C -0.502 4.502 10 O -0.926 6.926 11 C -0.030 4.030 12 C -0.144 4.144 13 N -0.640 5.640 14 C 0.097 3.903 15 C 0.541 3.459 16 O -0.627 6.627 17 C -0.570 4.570 18 H 0.088 0.912 19 C 0.030 3.970 20 N -0.819 5.819 21 Si 0.992 3.008 22 H -0.248 1.248 23 H -0.266 1.266 24 H -0.270 1.270 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.051 0.949 33 H 0.194 0.806 34 H 0.144 0.856 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.761 -3.010 16.790 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.067 3.933 3 H 0.086 0.914 4 C -0.062 4.062 5 C -0.168 4.168 6 C -0.098 4.098 7 C -0.576 4.576 8 S 1.614 4.386 9 C -0.660 4.660 10 O -0.922 6.922 11 C -0.048 4.048 12 C -0.163 4.163 13 N -0.376 5.376 14 C -0.046 4.046 15 C 0.347 3.653 16 O -0.514 6.514 17 C -0.606 4.606 18 H 0.106 0.894 19 C -0.185 4.185 20 N -0.449 5.449 21 Si 0.812 3.188 22 H -0.171 1.171 23 H -0.190 1.190 24 H -0.195 1.195 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.139 0.861 29 H 0.124 0.876 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.071 0.929 33 H 0.211 0.789 34 H 0.162 0.838 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.889 -2.778 17.688 18.848 hybrid contribution 1.180 -1.260 -3.268 3.696 sum -4.709 -4.038 14.420 15.697 Atomic orbital electron populations 1.21996 0.91525 1.03039 1.03039 1.19784 0.95408 0.95560 0.82535 0.91402 1.20785 0.95324 0.94114 0.95939 1.21385 1.01699 0.95065 0.98664 1.21071 0.96366 0.99063 0.93321 1.27950 1.13297 1.03620 1.12750 1.68384 0.84260 0.89337 0.96593 1.27818 1.21491 1.09874 1.06775 1.92952 1.76950 1.39120 1.83203 1.21362 0.92630 0.91613 0.99208 1.21502 1.00865 1.01009 0.92936 1.47836 1.33295 1.28422 1.28031 1.21625 0.97014 0.86817 0.99146 1.18604 0.78590 0.83952 0.84164 1.90530 1.60253 1.29101 1.71540 1.21543 1.15686 1.12599 1.10755 0.89376 1.26940 0.95348 0.94708 1.01498 1.70186 1.17257 1.19634 1.37809 0.85052 0.78427 0.79014 0.76346 1.17147 1.19031 1.19531 0.91430 0.89506 0.92279 0.86143 0.87631 0.84558 0.85522 0.92907 0.78911 0.83841 0.93306 0.92543 0.90403 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 8.81 71.98 0.63 -3.40 16 2 C 0.17 6.73 2.78 44.25 0.12 6.85 16 3 H 0.07 3.07 7.07 -2.39 -0.02 3.05 16 4 C -0.06 -2.15 5.02 -19.87 -0.10 -2.25 16 5 C -0.15 -5.49 8.98 22.27 0.20 -5.29 16 6 C -0.08 -2.69 9.44 22.27 0.21 -2.48 16 7 C -0.48 -12.25 5.61 22.27 0.12 -12.13 16 8 S 1.42 24.72 14.19 -56.49 -0.80 23.92 16 9 C -0.50 -8.26 10.70 113.37 1.21 -7.04 16 10 O -0.93 -29.56 16.90 -148.98 -2.52 -32.08 16 11 C -0.03 -0.63 9.75 22.27 0.22 -0.41 16 12 C -0.14 -4.10 9.70 22.27 0.22 -3.89 16 13 N -0.64 -29.47 2.45 -831.88 -2.04 -31.51 16 14 C 0.10 3.60 7.54 127.77 0.96 4.57 16 15 C 0.54 31.84 7.61 86.36 0.66 32.50 16 16 O -0.63 -42.23 14.46 -4.30 -0.06 -42.29 16 17 C -0.57 -32.78 8.73 24.83 0.22 -32.56 16 18 H 0.09 4.60 6.12 -2.91 -0.02 4.58 16 19 C 0.03 1.71 5.50 85.30 0.47 2.18 16 20 N -0.82 -50.62 11.83 21.84 0.26 -50.36 16 21 Si 0.99 41.76 29.56 68.60 2.03 43.79 16 22 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 23 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H 0.07 1.81 6.72 -2.39 -0.02 1.79 16 26 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.12 4.52 4.60 -2.91 -0.01 4.50 16 29 H 0.11 3.80 7.45 -2.91 -0.02 3.78 16 30 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 2.20 6.43 -2.38 -0.02 2.19 16 37 H 0.08 2.43 5.13 -2.39 -0.01 2.41 16 38 H 0.27 15.29 8.29 -92.71 -0.77 14.52 16 Total: -1.00 -92.63 327.69 3.09 -89.54 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 1.07 Total: 22.35 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 5.15 Total: -23.36 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -1.78 Total: -81.88 kcal Atomic # 8 Polarization: -71.79 SS G_CDS: -2.58 Total: -74.37 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 24.72 SS G_CDS: -0.80 Total: 23.92 kcal Total: -92.63 3.09 -89.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356943944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.399 kcal (2) G-P(sol) polarization free energy of solvation -92.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds