Wall clock time and date at job start Tue Mar 31 2020 07:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99930 * 2 1 4 4 C 1.38747 * 120.05586 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94590 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05159 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.11362 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05438 * 359.97438 * 7 6 5 9 9 C 1.50708 * 120.02715 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46952 * 215.02322 * 9 8 7 11 11 C 1.53005 * 109.46537 * 95.02417 * 9 8 7 12 12 S 1.81401 * 109.47145 * 335.02653 * 9 8 7 13 13 C 1.81395 * 102.99745 * 184.99777 * 12 9 8 14 14 C 1.50707 * 109.47002 * 179.97438 * 13 12 9 15 15 O 1.21291 * 119.99732 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00135 * 179.97438 * 14 13 12 17 17 C 1.37090 * 120.00188 * 179.97438 * 16 14 13 18 18 H 1.08002 * 119.99900 * 0.02562 * 17 16 14 19 19 C 1.38944 * 120.00345 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00259 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99935 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46822 * 90.00000 * 21 19 17 23 23 H 1.48498 * 109.47227 * 209.99875 * 21 19 17 24 24 H 1.48501 * 109.47260 * 330.00373 * 21 19 17 25 25 H 1.08995 * 109.47056 * 60.00501 * 1 2 3 26 26 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47294 * 300.00489 * 1 2 3 28 28 H 1.08000 * 120.03046 * 0.02562 * 4 3 2 29 29 H 1.07993 * 119.97844 * 179.72247 * 5 4 3 30 30 H 1.08004 * 119.94567 * 179.97438 * 6 5 4 31 31 H 1.08001 * 119.97538 * 179.97438 * 7 6 5 32 32 H 1.09009 * 109.46380 * 179.97438 * 11 9 8 33 33 H 1.09000 * 109.47422 * 299.99616 * 11 9 8 34 34 H 1.08995 * 109.47048 * 60.00511 * 11 9 8 35 35 H 1.08999 * 109.47707 * 299.99968 * 13 12 9 36 36 H 1.09002 * 109.47370 * 60.00156 * 13 12 9 37 37 H 0.97003 * 119.99716 * 0.02562 * 16 14 13 38 38 H 0.97000 * 119.99881 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 4.0560 2.5171 0.0000 8 6 3.4311 1.2848 0.0005 9 6 4.2537 0.0221 0.0005 10 1 3.7467 -0.7419 -0.5889 11 6 4.4267 -0.4738 1.4376 12 16 5.8825 0.3615 -0.7222 13 6 6.6548 -1.2790 -0.7763 14 6 8.0382 -1.1639 -1.3631 15 8 8.4615 -0.0815 -1.7102 16 7 8.8052 -2.2634 -1.5012 17 6 10.0634 -2.1588 -2.0355 18 1 10.4401 -1.1952 -2.3453 19 6 10.8540 -3.2924 -2.1784 20 7 12.0603 -3.1920 -2.6901 21 14 10.2028 -4.9590 -1.6419 22 1 9.5030 -5.6068 -2.7803 23 1 11.3345 -5.8153 -1.2046 24 1 9.2531 -4.7798 -0.5144 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2128 2.3203 -0.0005 29 1 1.3341 4.5113 -0.0060 30 1 3.7923 4.6380 -0.0014 31 1 5.1344 2.5751 0.0000 32 1 5.0214 -1.3874 1.4376 33 1 4.9338 0.2902 2.0271 34 1 3.4481 -0.6777 1.8719 35 1 6.7207 -1.6831 0.2339 36 1 6.0523 -1.9440 -1.3950 37 1 8.4667 -3.1289 -1.2233 38 1 12.6123 -3.9834 -2.7895 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361388079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:35 Heat of formation + Delta-G solvation = -46.581334 kcal Electronic energy + Delta-G solvation = -20565.065206 eV Core-core repulsion = 17306.353052 eV Total energy + Delta-G solvation = -3258.712154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.45408 -38.29708 -37.64070 -34.37338 -34.02825 -31.75114 -30.45299 -29.95317 -29.03877 -27.50873 -24.47618 -24.14368 -22.34749 -21.33280 -19.55191 -18.56685 -18.13898 -16.66634 -16.37149 -15.98667 -15.91359 -15.25291 -14.85359 -14.67527 -14.62516 -14.35462 -13.85067 -13.49121 -13.35477 -13.28356 -12.68148 -12.51882 -12.40330 -12.15564 -12.09210 -11.89196 -11.56071 -11.44057 -11.28387 -11.19355 -10.81523 -10.62373 -10.00320 -9.61671 -9.44832 -9.00568 -8.65608 -8.32526 -8.22904 -7.30840 -6.33870 -3.85811 1.13199 1.26637 1.82623 2.83743 3.00969 3.03404 3.05462 3.13831 3.60422 3.65518 4.07823 4.42494 4.59015 4.63332 4.78169 4.83962 4.93323 5.04456 5.09029 5.15775 5.17145 5.23519 5.29207 5.51484 5.56214 5.58570 5.63436 5.76465 5.87028 5.88466 6.09649 6.13886 6.27313 6.42421 6.62946 7.16306 7.51818 8.08739 8.53433 8.90009 9.37286 9.74524 10.78920 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.028924 B = 0.003175 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.813785 B = 8817.439940 C = 9520.404814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.133 3.867 4 C -0.210 4.210 5 C -0.084 4.084 6 C -0.152 4.152 7 C -0.067 4.067 8 C -0.089 4.089 9 C -0.037 4.037 10 H 0.095 0.905 11 C -0.139 4.139 12 S -0.162 6.162 13 C -0.121 4.121 14 C 0.465 3.535 15 O -0.557 6.557 16 N -0.583 5.583 17 C -0.306 4.306 18 H 0.121 0.879 19 C 0.043 3.957 20 N -0.878 5.878 21 Si 0.879 3.121 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.269 1.269 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.142 0.858 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.372 0.628 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.987 5.805 8.594 27.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.087 3.913 4 C -0.228 4.228 5 C -0.102 4.102 6 C -0.170 4.170 7 C -0.086 4.086 8 C -0.090 4.090 9 C -0.166 4.166 10 H 0.113 0.887 11 C -0.198 4.198 12 S 0.066 5.934 13 C -0.273 4.273 14 C 0.249 3.751 15 O -0.439 6.439 16 N -0.222 5.222 17 C -0.435 4.435 18 H 0.139 0.861 19 C -0.160 4.160 20 N -0.518 5.518 21 Si 0.705 3.295 22 H -0.195 1.195 23 H -0.201 1.201 24 H -0.195 1.195 25 H 0.073 0.927 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.160 0.840 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.205 0.795 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.947 7.174 7.941 26.230 hybrid contribution -1.172 -2.610 0.728 2.952 sum -25.120 4.564 8.669 26.962 Atomic orbital electron populations 1.23046 0.78576 1.03892 1.01247 1.86086 1.21139 1.26817 1.88646 1.18750 0.91331 0.84326 0.96915 1.21143 0.99770 0.92283 1.09651 1.20936 0.94725 0.96857 0.97718 1.21078 0.93761 0.98506 1.03676 1.21088 1.00955 0.90758 0.95796 1.18638 0.89758 0.94288 1.06351 1.21975 0.96734 0.97826 1.00044 0.88682 1.22022 1.02065 1.01497 0.94168 1.87307 1.11975 1.11948 1.82191 1.23543 0.99755 0.99242 1.04756 1.18890 0.85556 0.85400 0.85224 1.90600 1.73386 1.26629 1.53316 1.42102 1.15520 1.07433 1.57113 1.19449 0.88433 0.98273 1.37309 0.86107 1.25034 0.95499 0.98167 0.97304 1.69620 1.08385 1.30310 1.43471 0.86677 0.79260 0.84327 0.79194 1.19526 1.20056 1.19461 0.92689 0.88295 0.92737 0.85545 0.85876 0.85614 0.84002 0.92213 0.91351 0.91967 0.88643 0.88745 0.79542 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.35 9.63 -19.42 -0.19 -3.53 16 3 C 0.13 1.54 6.66 -39.22 -0.26 1.28 16 4 C -0.21 -2.03 9.04 -39.43 -0.36 -2.39 16 5 C -0.08 -0.79 10.04 -39.60 -0.40 -1.19 16 6 C -0.15 -1.61 10.04 -39.56 -0.40 -2.01 16 7 C -0.07 -0.85 9.10 -39.61 -0.36 -1.21 16 8 C -0.09 -1.15 5.01 -104.47 -0.52 -1.67 16 9 C -0.04 -0.49 2.73 -27.88 -0.08 -0.57 16 10 H 0.09 1.27 7.69 -51.92 -0.40 0.87 16 11 C -0.14 -1.62 9.08 37.16 0.34 -1.29 16 12 S -0.16 -2.77 18.21 -107.50 -1.96 -4.72 16 13 C -0.12 -2.12 6.12 36.01 0.22 -1.90 16 14 C 0.46 10.89 7.80 -10.98 -0.09 10.81 16 15 O -0.56 -15.42 15.44 5.55 0.09 -15.34 16 16 N -0.58 -14.09 5.09 -10.96 -0.06 -14.14 16 17 C -0.31 -8.72 10.16 -14.94 -0.15 -8.87 16 18 H 0.12 3.93 7.39 -52.49 -0.39 3.54 16 19 C 0.04 1.19 5.50 -17.47 -0.10 1.10 16 20 N -0.88 -25.69 13.96 55.50 0.77 -24.92 16 21 Si 0.88 19.35 27.74 -169.99 -4.71 14.63 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 25 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 26 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 29 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 31 H 0.14 1.92 6.48 -52.49 -0.34 1.58 16 32 H 0.06 0.67 6.92 -51.92 -0.36 0.31 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 1.44 7.14 -51.92 -0.37 1.06 16 36 H 0.09 1.44 8.14 -51.92 -0.42 1.01 16 37 H 0.37 7.83 5.76 -40.82 -0.24 7.60 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -33.58 331.89 -7.13 -40.71 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -4.92 Total: 9.04 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -1.16 Total: -6.74 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.72 Total: -39.06 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.10 Total: -18.87 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.63 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -1.96 Total: -4.72 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.58 -7.13 -40.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361388079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.869 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds