Wall clock time and date at job start Tue Mar 31 2020 07:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00251 * 2 1 4 4 C 1.38753 * 120.05684 * 359.95691 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05457 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02482 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.47585 * 335.00081 * 9 8 7 11 11 C 1.53000 * 109.47197 * 95.00316 * 9 8 7 12 12 S 1.81407 * 109.46931 * 214.99936 * 9 8 7 13 13 C 1.81394 * 102.99971 * 175.00082 * 12 9 8 14 14 C 1.50705 * 109.47081 * 179.97438 * 13 12 9 15 15 O 1.21289 * 119.99883 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99858 * 179.97438 * 14 13 12 17 17 C 1.37092 * 119.99909 * 180.02562 * 16 14 13 18 18 H 1.08006 * 120.00220 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00440 * 179.97438 * 17 16 14 20 20 N 1.31416 * 119.99524 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46918 * 90.00081 * 21 19 17 23 23 H 1.48500 * 109.47128 * 210.00284 * 21 19 17 24 24 H 1.48497 * 109.46962 * 330.00172 * 21 19 17 25 25 H 1.09001 * 109.47048 * 59.99886 * 1 2 3 26 26 H 1.08993 * 109.47446 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47023 * 300.00310 * 1 2 3 28 28 H 1.08002 * 120.02760 * 0.04235 * 4 3 2 29 29 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 30 30 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 32 32 H 1.09006 * 109.47179 * 299.99646 * 11 9 8 33 33 H 1.09001 * 109.47496 * 59.99255 * 11 9 8 34 34 H 1.08997 * 109.47357 * 179.97438 * 11 9 8 35 35 H 1.08993 * 109.47607 * 300.00284 * 13 12 9 36 36 H 1.09006 * 109.47449 * 60.00072 * 13 12 9 37 37 H 0.96999 * 120.00278 * 0.02562 * 16 14 13 38 38 H 0.97006 * 119.99581 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9210 3.6048 -0.0014 6 6 3.3021 3.6757 -0.0005 7 6 4.0561 2.5170 0.0004 8 6 3.4312 1.2847 0.0009 9 6 4.2538 0.0221 0.0025 10 1 5.2328 0.2256 -0.4313 11 6 4.4258 -0.4728 1.4400 12 16 3.4106 -1.2501 -0.9781 13 6 4.6038 -2.6163 -0.9864 14 6 4.0404 -3.7705 -1.7749 15 8 2.9423 -3.6800 -2.2818 16 7 4.7574 -4.9028 -1.9177 17 6 4.2451 -5.9525 -2.6354 18 1 3.2672 -5.8720 -3.0868 19 6 4.9843 -7.1197 -2.7831 20 7 6.1744 -7.2175 -2.2343 21 14 4.2867 -8.5498 -3.7617 22 1 4.6817 -8.4139 -5.1867 23 1 4.8182 -9.8262 -3.2201 24 1 2.8054 -8.5459 -3.6561 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2129 2.3204 -0.0009 29 1 1.3342 4.5114 0.0020 30 1 3.7924 4.6380 -0.0014 31 1 5.1345 2.5751 0.0006 32 1 4.9324 0.2916 2.0292 33 1 3.4468 -0.6763 1.8738 34 1 5.0204 -1.3863 1.4411 35 1 5.5349 -2.2829 -1.4446 36 1 4.7971 -2.9363 0.0375 37 1 5.6358 -4.9750 -1.5126 38 1 6.6904 -8.0325 -2.3371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361388080.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:37 Heat of formation + Delta-G solvation = -47.353963 kcal Electronic energy + Delta-G solvation = -20867.532035 eV Core-core repulsion = 17608.786378 eV Total energy + Delta-G solvation = -3258.745658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.26436 -38.03646 -37.39865 -34.29075 -33.94289 -31.31299 -30.28830 -29.80346 -28.74813 -27.18562 -24.58043 -24.05209 -22.18786 -21.26654 -19.44948 -18.06743 -17.84889 -16.67154 -16.13304 -15.76065 -15.65893 -15.19092 -14.54861 -14.46497 -14.43220 -14.03744 -13.84216 -13.62497 -13.29621 -13.19202 -12.47838 -12.29865 -12.17467 -11.85599 -11.84820 -11.57872 -11.52562 -11.26695 -11.05152 -10.96554 -10.62438 -10.38416 -10.20787 -9.52387 -9.21434 -8.94131 -8.46823 -8.10816 -7.99018 -6.97174 -6.42706 -3.83590 1.15392 1.37641 2.04164 2.90137 3.17941 3.26720 3.33117 3.62615 3.68817 3.87214 4.18240 4.54528 4.73831 4.86866 4.99422 5.08543 5.12717 5.22039 5.22810 5.24364 5.25615 5.39532 5.58090 5.64166 5.65395 5.73971 5.78583 5.84629 5.91535 6.17608 6.25322 6.29046 6.31720 6.41692 6.70866 7.45730 7.54716 8.02532 8.57848 9.15513 9.50766 10.01813 10.75024 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.032272 B = 0.003259 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.404296 B = 8588.773688 C = 9106.373850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.274 6.274 3 C 0.142 3.858 4 C -0.211 4.211 5 C -0.083 4.083 6 C -0.163 4.163 7 C -0.072 4.072 8 C -0.096 4.096 9 C -0.045 4.045 10 H 0.088 0.912 11 C -0.139 4.139 12 S -0.118 6.118 13 C -0.133 4.133 14 C 0.458 3.542 15 O -0.576 6.576 16 N -0.558 5.558 17 C -0.299 4.299 18 H 0.104 0.896 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.931 3.069 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.269 1.269 25 H 0.052 0.948 26 H 0.102 0.898 27 H 0.048 0.952 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.393 0.607 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.126 19.382 8.113 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.186 6.186 3 C 0.094 3.906 4 C -0.230 4.230 5 C -0.101 4.101 6 C -0.181 4.181 7 C -0.091 4.091 8 C -0.098 4.098 9 C -0.174 4.174 10 H 0.107 0.893 11 C -0.198 4.198 12 S 0.112 5.888 13 C -0.284 4.284 14 C 0.243 3.757 15 O -0.460 6.460 16 N -0.194 5.194 17 C -0.429 4.429 18 H 0.122 0.878 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.758 3.242 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.193 1.193 25 H 0.070 0.930 26 H 0.120 0.880 27 H 0.067 0.933 28 H 0.146 0.854 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.226 0.774 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.620 19.045 7.266 21.145 hybrid contribution 1.412 -0.693 0.365 1.615 sum -4.208 18.352 7.631 20.316 Atomic orbital electron populations 1.23111 0.79665 1.04244 1.00423 1.86660 1.20287 1.24452 1.87174 1.19041 0.91737 0.85389 0.94440 1.21234 1.00076 0.92290 1.09413 1.20916 0.94670 0.96887 0.97625 1.20948 0.93906 0.98076 1.05182 1.20790 0.99808 0.90728 0.97811 1.18671 0.90375 0.93921 1.06850 1.22064 1.00641 0.95224 0.99493 0.89334 1.22038 1.02986 1.00729 0.94051 1.87786 1.24245 1.09324 1.67481 1.23636 1.02138 0.98707 1.03961 1.19026 0.87076 0.83735 0.85910 1.90549 1.21112 1.81884 1.52469 1.41781 1.18274 1.12143 1.47221 1.19730 1.03397 0.91607 1.28147 0.87799 1.25276 0.95568 0.99060 0.97982 1.69620 1.11121 1.28905 1.44589 0.85836 0.79270 0.79734 0.79341 1.20355 1.20895 1.19340 0.92982 0.87975 0.93301 0.85449 0.86077 0.86017 0.85496 0.92427 0.91199 0.92158 0.89293 0.89050 0.77362 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.27 -4.00 7.11 -19.41 -0.14 -4.14 16 3 C 0.14 1.91 6.42 -39.22 -0.25 1.66 16 4 C -0.21 -2.36 9.04 -39.43 -0.36 -2.72 16 5 C -0.08 -0.81 10.04 -39.60 -0.40 -1.20 16 6 C -0.16 -1.58 10.04 -39.56 -0.40 -1.97 16 7 C -0.07 -0.78 9.68 -39.61 -0.38 -1.16 16 8 C -0.10 -1.27 4.91 -104.47 -0.51 -1.78 16 9 C -0.05 -0.62 2.95 -27.88 -0.08 -0.71 16 10 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 11 C -0.14 -1.71 9.08 37.16 0.34 -1.37 16 12 S -0.12 -2.16 17.04 -107.50 -1.83 -3.99 16 13 C -0.13 -2.52 6.12 36.01 0.22 -2.30 16 14 C 0.46 11.32 7.80 -10.98 -0.09 11.24 16 15 O -0.58 -16.29 15.44 5.55 0.09 -16.21 16 16 N -0.56 -14.50 5.29 -10.96 -0.06 -14.56 16 17 C -0.30 -8.48 9.68 -14.94 -0.14 -8.62 16 18 H 0.10 3.08 7.16 -52.48 -0.38 2.71 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 21 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 26 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 28 H 0.13 1.17 6.30 -52.49 -0.33 0.84 16 29 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.73 6.92 -51.93 -0.36 0.37 16 35 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.09 1.55 7.14 -51.92 -0.37 1.18 16 37 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -32.81 333.71 -7.44 -40.25 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.07 Total: 8.59 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.16 Total: -7.19 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.67 Total: -38.53 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -2.16 SS G_CDS: -1.83 Total: -3.99 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.81 -7.44 -40.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361388080.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.102 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds