Wall clock time and date at job start Tue Mar 31 2020 07:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00251 * 2 1 4 4 C 1.38753 * 120.05684 * 359.95691 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05457 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02482 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.47585 * 335.00081 * 9 8 7 11 11 C 1.53000 * 109.47197 * 95.00316 * 9 8 7 12 12 S 1.81407 * 109.46931 * 214.99936 * 9 8 7 13 13 C 1.81394 * 102.99971 * 175.00082 * 12 9 8 14 14 C 1.50705 * 109.47081 * 179.97438 * 13 12 9 15 15 O 1.21289 * 119.99883 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99858 * 179.97438 * 14 13 12 17 17 C 1.37092 * 119.99909 * 180.02562 * 16 14 13 18 18 H 1.08006 * 120.00220 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00440 * 179.97438 * 17 16 14 20 20 N 1.31416 * 119.99524 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46918 * 90.00081 * 21 19 17 23 23 H 1.48500 * 109.47128 * 210.00284 * 21 19 17 24 24 H 1.48497 * 109.46962 * 330.00172 * 21 19 17 25 25 H 1.09001 * 109.47048 * 59.99886 * 1 2 3 26 26 H 1.08993 * 109.47446 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47023 * 300.00310 * 1 2 3 28 28 H 1.08002 * 120.02760 * 0.04235 * 4 3 2 29 29 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 30 30 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 32 32 H 1.09006 * 109.47179 * 299.99646 * 11 9 8 33 33 H 1.09001 * 109.47496 * 59.99255 * 11 9 8 34 34 H 1.08997 * 109.47357 * 179.97438 * 11 9 8 35 35 H 1.08993 * 109.47607 * 300.00284 * 13 12 9 36 36 H 1.09006 * 109.47449 * 60.00072 * 13 12 9 37 37 H 0.96999 * 120.00278 * 0.02562 * 16 14 13 38 38 H 0.97006 * 119.99581 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9210 3.6048 -0.0014 6 6 3.3021 3.6757 -0.0005 7 6 4.0561 2.5170 0.0004 8 6 3.4312 1.2847 0.0009 9 6 4.2538 0.0221 0.0025 10 1 5.2328 0.2256 -0.4313 11 6 4.4258 -0.4728 1.4400 12 16 3.4106 -1.2501 -0.9781 13 6 4.6038 -2.6163 -0.9864 14 6 4.0404 -3.7705 -1.7749 15 8 2.9423 -3.6800 -2.2818 16 7 4.7574 -4.9028 -1.9177 17 6 4.2451 -5.9525 -2.6354 18 1 3.2672 -5.8720 -3.0868 19 6 4.9843 -7.1197 -2.7831 20 7 6.1744 -7.2175 -2.2343 21 14 4.2867 -8.5498 -3.7617 22 1 4.6817 -8.4139 -5.1867 23 1 4.8182 -9.8262 -3.2201 24 1 2.8054 -8.5459 -3.6561 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2129 2.3204 -0.0009 29 1 1.3342 4.5114 0.0020 30 1 3.7924 4.6380 -0.0014 31 1 5.1345 2.5751 0.0006 32 1 4.9324 0.2916 2.0292 33 1 3.4468 -0.6763 1.8738 34 1 5.0204 -1.3863 1.4411 35 1 5.5349 -2.2829 -1.4446 36 1 4.7971 -2.9363 0.0375 37 1 5.6358 -4.9750 -1.5126 38 1 6.6904 -8.0325 -2.3371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361388080.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:36 Heat of formation + Delta-G solvation = -67.604804 kcal Electronic energy + Delta-G solvation = -20868.410178 eV Core-core repulsion = 17608.786378 eV Total energy + Delta-G solvation = -3259.623800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13905 -40.04411 -38.28378 -36.04325 -35.21156 -33.38118 -31.22520 -30.95620 -30.07403 -28.04474 -26.63062 -24.98028 -23.01502 -22.25520 -21.32009 -20.02123 -18.87536 -17.93883 -17.55163 -17.05621 -16.60556 -16.45622 -16.27462 -16.15512 -15.69021 -15.34104 -14.88550 -14.68319 -14.38722 -14.29156 -14.20747 -13.65485 -13.51085 -13.13980 -12.98680 -12.87403 -12.76067 -12.50926 -12.45876 -12.21802 -12.09906 -11.85032 -11.56033 -11.53575 -10.50830 -10.44826 -10.07548 -9.77873 -8.99283 -8.50541 -8.37189 -5.99986 0.25938 0.54242 0.79323 1.36156 1.40798 1.54135 1.69957 1.95712 2.28728 2.67567 2.86247 3.15574 3.16045 3.64858 3.91751 4.08163 4.16146 4.22938 4.24335 4.31865 4.32521 4.43136 4.44055 4.50120 4.56450 4.77633 4.78293 4.80668 4.86667 5.08239 5.22913 5.37764 5.44462 5.50941 5.62375 5.92617 5.94264 6.52128 6.58142 7.06138 7.46383 8.01803 8.66951 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.032272 B = 0.003259 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.404296 B = 8588.773688 C = 9106.373850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.304 6.304 3 C 0.115 3.885 4 C -0.219 4.219 5 C -0.082 4.082 6 C -0.161 4.161 7 C -0.074 4.074 8 C -0.122 4.122 9 C -0.025 4.025 10 H 0.103 0.897 11 C -0.135 4.135 12 S -0.175 6.175 13 C -0.119 4.119 14 C 0.453 3.547 15 O -0.617 6.617 16 N -0.564 5.564 17 C -0.337 4.337 18 H 0.079 0.921 19 C -0.010 4.010 20 N -0.918 5.918 21 Si 0.995 3.005 22 H -0.270 1.270 23 H -0.268 1.268 24 H -0.273 1.273 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.141 0.859 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.398 0.602 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.279 21.088 8.729 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.218 6.218 3 C 0.068 3.932 4 C -0.238 4.238 5 C -0.100 4.100 6 C -0.179 4.179 7 C -0.093 4.093 8 C -0.124 4.124 9 C -0.154 4.154 10 H 0.121 0.879 11 C -0.193 4.193 12 S 0.055 5.945 13 C -0.270 4.270 14 C 0.240 3.760 15 O -0.504 6.504 16 N -0.201 5.201 17 C -0.466 4.466 18 H 0.097 0.903 19 C -0.211 4.211 20 N -0.559 5.559 21 Si 0.818 3.182 22 H -0.195 1.195 23 H -0.193 1.193 24 H -0.197 1.197 25 H 0.076 0.924 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.159 0.841 29 H 0.168 0.832 30 H 0.169 0.831 31 H 0.166 0.834 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.232 0.768 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.749 20.759 7.899 22.713 hybrid contribution 1.125 -1.056 0.215 1.558 sum -3.624 19.703 8.114 21.614 Atomic orbital electron populations 1.23217 0.78475 1.04308 1.01750 1.86550 1.21733 1.25770 1.87719 1.19348 0.92328 0.85660 0.95890 1.21485 1.00872 0.92227 1.09213 1.21327 0.95246 0.97319 0.96106 1.21350 0.93990 0.98941 1.03610 1.21089 1.01090 0.90115 0.96986 1.18841 0.90451 0.94333 1.08798 1.22071 1.00581 0.93594 0.99105 0.87853 1.21992 1.02429 1.01486 0.93427 1.88075 1.25860 1.11117 1.69491 1.23429 1.02639 0.96857 1.04046 1.19935 0.86387 0.84509 0.85216 1.90516 1.22993 1.82843 1.54040 1.41827 1.18563 1.12356 1.47375 1.19697 1.03285 0.93436 1.30180 0.90252 1.26079 0.95725 1.00870 0.98381 1.69676 1.11669 1.29844 1.44691 0.84899 0.78287 0.76816 0.78167 1.19499 1.19278 1.19736 0.92391 0.88634 0.91142 0.84140 0.83233 0.83097 0.83354 0.89946 0.92688 0.92133 0.87091 0.87010 0.76809 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.30 -9.14 7.11 -92.39 -0.66 -9.80 16 3 C 0.11 3.05 6.42 22.51 0.14 3.19 16 4 C -0.22 -4.57 9.04 22.37 0.20 -4.37 16 5 C -0.08 -1.36 10.04 22.26 0.22 -1.13 16 6 C -0.16 -2.56 10.04 22.28 0.22 -2.34 16 7 C -0.07 -1.39 9.68 22.25 0.22 -1.18 16 8 C -0.12 -3.06 4.91 -19.77 -0.10 -3.16 16 9 C -0.02 -0.66 2.95 29.85 0.09 -0.57 16 10 H 0.10 2.38 8.05 -2.39 -0.02 2.36 16 11 C -0.13 -3.13 9.08 71.98 0.65 -2.47 16 12 S -0.17 -6.49 17.04 -56.49 -0.96 -7.45 16 13 C -0.12 -4.52 6.12 71.24 0.44 -4.08 16 14 C 0.45 23.02 7.80 87.66 0.68 23.71 16 15 O -0.62 -36.42 15.44 -3.06 -0.05 -36.46 16 16 N -0.56 -30.08 5.29 -306.98 -1.62 -31.71 16 17 C -0.34 -19.60 9.68 84.04 0.81 -18.79 16 18 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 19 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 20 N -0.92 -50.02 13.05 21.66 0.28 -49.74 16 21 Si 1.00 43.42 29.55 68.60 2.03 45.44 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H 0.06 1.18 7.66 -2.39 -0.02 1.16 16 26 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.07 1.21 7.66 -2.38 -0.02 1.19 16 28 H 0.14 2.39 6.30 -2.91 -0.02 2.38 16 29 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 30 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 31 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.38 6.92 -2.39 -0.02 1.36 16 35 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 36 H 0.11 3.74 7.14 -2.39 -0.02 3.72 16 37 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 38 H 0.28 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -72.73 333.71 4.53 -68.20 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.34 Total: 31.27 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 5.17 Total: -9.76 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -1.34 Total: -81.44 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.70 Total: -46.26 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -6.49 SS G_CDS: -0.96 Total: -7.45 kcal Total: -72.73 4.53 -68.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361388080.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.597 kcal (2) G-P(sol) polarization free energy of solvation -72.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds