Wall clock time and date at job start Tue Mar 31 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47227 * 2 1 4 4 C 1.31001 * 120.00051 * 124.99666 * 3 2 1 5 5 C 1.50704 * 119.99749 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47186 * 125.00137 * 5 4 3 7 7 S 1.65602 * 119.99883 * 164.99961 * 6 5 4 8 8 O 1.42102 * 106.40101 * 178.54092 * 7 6 5 9 9 O 1.42105 * 106.40293 * 311.45759 * 7 6 5 10 10 C 1.76194 * 107.21945 * 64.99964 * 7 6 5 11 11 C 1.38635 * 119.75148 * 269.72899 * 10 7 6 12 12 C 1.37611 * 120.24810 * 179.72645 * 11 10 7 13 13 C 1.40714 * 119.74434 * 0.55998 * 12 11 10 14 14 C 1.41400 * 120.24048 * 179.68681 * 13 12 11 15 15 H 1.08002 * 119.99680 * 204.41090 * 14 13 12 16 16 C 1.39942 * 120.00299 * 24.41200 * 14 13 12 17 17 N 1.30821 * 120.00237 * 17.84379 * 16 14 13 18 18 Si 1.86800 * 119.99946 * 197.84703 * 16 14 13 19 19 H 1.48503 * 109.47520 * 59.99781 * 18 16 14 20 20 H 1.48500 * 109.47029 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46998 * 299.99776 * 18 16 14 22 22 C 1.40710 * 119.51436 * 359.71380 * 13 12 11 23 23 C 1.37615 * 119.74572 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.46957 * 300.00071 * 1 2 3 25 25 H 1.08997 * 109.46645 * 60.00204 * 1 2 3 26 26 H 1.08999 * 109.46828 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47668 * 239.99736 * 2 1 3 28 28 H 1.09007 * 109.47130 * 119.99573 * 2 1 3 29 29 H 1.08005 * 119.99607 * 305.00202 * 3 2 1 30 30 H 1.07995 * 120.00340 * 0.02562 * 4 3 2 31 31 H 1.09001 * 109.47176 * 4.99979 * 5 4 3 32 32 H 1.09008 * 109.46917 * 245.00367 * 5 4 3 33 33 H 0.97001 * 120.00323 * 344.99841 * 6 5 4 34 34 H 1.08004 * 119.87204 * 359.97438 * 11 10 7 35 35 H 1.08000 * 120.12973 * 180.27716 * 12 11 10 36 36 H 0.96992 * 120.00351 * 179.97438 * 17 16 14 37 37 H 1.08004 * 120.12813 * 179.97438 * 22 13 12 38 38 H 1.07998 * 119.88166 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8642 1.8215 0.9294 5 6 3.3660 3.2425 0.9296 6 7 3.0834 3.8599 2.2277 7 16 3.8364 5.2718 2.6545 8 8 3.3316 5.6245 3.9351 9 8 5.2198 5.0849 2.3889 10 6 3.2796 6.5175 1.5398 11 6 3.9747 6.7479 0.3626 12 6 3.5457 7.7145 -0.5179 13 6 2.4036 8.4783 -0.2141 14 6 1.9574 9.4786 -1.1083 15 1 1.3654 10.3046 -0.7426 16 6 2.2827 9.3984 -2.4670 17 7 2.6827 8.2624 -2.9779 18 14 2.1460 10.9134 -3.5512 19 1 3.0413 11.9775 -3.0301 20 1 2.5442 10.5665 -4.9391 21 1 0.7432 11.4005 -3.5463 22 6 1.7093 8.2396 0.9862 23 6 2.1526 7.2635 1.8490 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.7065 2.1087 -0.7662 30 1 3.1903 1.1335 1.6953 31 1 2.8641 3.8052 0.1426 32 1 4.4414 3.2480 0.7510 33 1 2.4552 3.4419 2.8372 34 1 4.8540 6.1638 0.1340 35 1 4.0861 7.8893 -1.4365 36 1 2.9078 8.2067 -3.9197 37 1 0.8317 8.8203 1.2295 38 1 1.6212 7.0782 2.7707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384761521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:02 Heat of formation + Delta-G solvation = -64.089061 kcal Electronic energy + Delta-G solvation = -20955.595412 eV Core-core repulsion = 17696.124066 eV Total energy + Delta-G solvation = -3259.471346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -37.57839 -36.82946 -36.38753 -35.10927 -34.30993 -34.03950 -30.53163 -30.25961 -29.46709 -25.82455 -25.59644 -22.29836 -21.51308 -21.12816 -19.81862 -18.76406 -17.62027 -17.07866 -16.60423 -15.89547 -15.52127 -14.83325 -14.64487 -14.22996 -14.04776 -13.46354 -13.41298 -13.24000 -13.14573 -12.41438 -12.20737 -12.16400 -11.98541 -11.78976 -11.63434 -11.45069 -11.35003 -11.27021 -11.22289 -11.14360 -10.89816 -10.71731 -10.43256 -9.77933 -9.67450 -9.50596 -9.30531 -8.86807 -7.96408 -7.70571 -7.15275 -4.80844 1.24930 2.17602 2.26010 2.87411 2.88908 2.91950 2.94696 3.65623 3.83632 4.24489 4.54512 4.64611 4.90854 5.16565 5.19101 5.21351 5.30683 5.39478 5.53398 5.71310 5.76425 5.85675 5.90044 6.06002 6.07040 6.11691 6.22605 6.62995 6.67528 6.70539 6.76120 6.91489 7.04778 7.32417 7.36885 7.42866 7.63352 7.76514 7.96495 8.31200 8.50763 8.64675 9.76188 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.004431 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.733011 B = 6316.897217 C = 7720.898455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.165 4.165 5 C 0.149 3.851 6 N -1.123 6.123 7 S 2.694 3.306 8 O -0.987 6.987 9 O -0.985 6.985 10 C -0.787 4.787 11 C -0.017 4.017 12 C -0.183 4.183 13 C 0.140 3.860 14 C -0.436 4.436 15 H 0.087 0.913 16 C 0.073 3.927 17 N -0.766 5.766 18 Si 0.917 3.083 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.261 1.261 22 C -0.239 4.239 23 C 0.003 3.997 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.410 0.590 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.289 0.711 37 H 0.100 0.900 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 -10.555 0.530 10.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.165 4.165 4 C -0.184 4.184 5 C 0.024 3.976 6 N -0.879 5.879 7 S 2.793 3.207 8 O -0.978 6.978 9 O -0.975 6.975 10 C -0.883 4.883 11 C -0.038 4.038 12 C -0.203 4.203 13 C 0.136 3.864 14 C -0.464 4.464 15 H 0.105 0.895 16 C -0.149 4.149 17 N -0.389 5.389 18 Si 0.741 3.259 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.186 1.186 22 C -0.260 4.260 23 C -0.018 4.018 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.242 0.758 34 H 0.121 0.879 35 H 0.140 0.860 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.527 -10.543 0.888 10.690 hybrid contribution -0.803 0.698 -0.976 1.443 sum -2.330 -9.845 -0.087 10.118 Atomic orbital electron populations 1.21717 0.95106 1.01465 1.02329 1.20655 0.96204 0.94274 1.02216 1.23008 0.96986 0.97370 0.99096 1.22909 0.99222 0.96553 0.99734 1.20240 1.01106 0.91201 0.85095 1.55715 1.62313 1.42851 1.27067 1.01190 0.73258 0.72692 0.73580 1.93488 1.81336 1.83252 1.39681 1.93480 1.31762 1.86002 1.86277 1.29159 1.15200 1.26123 1.17825 1.20271 0.95705 0.96265 0.91529 1.21333 0.98414 1.00278 1.00281 1.17847 0.88846 0.89194 0.90508 1.19920 1.27295 1.07136 0.92001 0.89476 1.26123 0.92182 0.97343 0.99260 1.69800 1.28516 1.25257 1.15308 0.86196 0.80261 0.81275 0.78218 1.18340 1.19890 1.18570 1.21048 1.02530 1.03764 0.98667 1.20167 0.92226 0.93301 0.96056 0.92510 0.92448 0.92744 0.91115 0.91683 0.86758 0.86976 0.90992 0.89867 0.75784 0.87873 0.85970 0.89938 0.88217 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 37.16 0.37 -0.88 16 2 C -0.10 -0.85 6.38 -27.88 -0.18 -1.03 16 3 C -0.15 -1.57 9.12 -36.03 -0.33 -1.90 16 4 C -0.16 -1.91 9.26 -36.02 -0.33 -2.24 16 5 C 0.15 2.12 6.66 -5.19 -0.03 2.08 16 6 N -1.12 -17.09 5.99 -11.65 -0.07 -17.16 16 7 S 2.69 52.03 5.73 -107.50 -0.62 51.41 16 8 O -0.99 -20.94 17.26 -57.17 -0.99 -21.93 16 9 O -0.98 -21.12 16.72 -57.17 -0.96 -22.07 16 10 C -0.79 -17.31 5.97 -39.29 -0.23 -17.54 16 11 C -0.02 -0.40 9.49 -39.66 -0.38 -0.78 16 12 C -0.18 -4.54 8.70 -38.88 -0.34 -4.88 16 13 C 0.14 3.53 5.57 -106.83 -0.60 2.93 16 14 C -0.44 -10.66 9.05 -37.74 -0.34 -11.01 16 15 H 0.09 2.01 7.91 -52.49 -0.41 1.60 16 16 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 17 N -0.77 -17.98 10.95 55.55 0.61 -17.37 16 18 Si 0.92 16.91 29.59 -169.99 -5.03 11.88 16 19 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 20 H -0.27 -4.91 7.11 56.52 0.40 -4.50 16 21 H -0.26 -4.76 7.11 56.52 0.40 -4.35 16 22 C -0.24 -5.67 9.80 -38.88 -0.38 -6.05 16 23 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.53 7.79 -51.92 -0.40 0.13 16 29 H 0.11 1.28 7.84 -52.48 -0.41 0.87 16 30 H 0.11 1.16 7.84 -52.49 -0.41 0.75 16 31 H 0.07 1.07 7.79 -51.93 -0.40 0.67 16 32 H 0.08 1.19 7.75 -51.92 -0.40 0.79 16 33 H 0.41 5.29 8.64 -34.47 -0.30 4.99 16 34 H 0.10 2.19 7.59 -52.48 -0.40 1.79 16 35 H 0.12 3.06 6.16 -52.49 -0.32 2.74 16 36 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 37 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 38 H 0.10 2.11 7.60 -52.49 -0.40 1.71 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -29.30 337.95 -10.31 -39.61 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -5.12 Total: 10.55 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: -3.24 Total: -40.03 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.54 Total: -34.52 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -1.94 Total: -44.00 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 52.03 SS G_CDS: -0.62 Total: 51.41 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.30 -10.31 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384761521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.475 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds