Wall clock time and date at job start Tue Mar 31 2020 06:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47227 * 2 1 4 4 C 1.31001 * 120.00051 * 124.99666 * 3 2 1 5 5 C 1.50704 * 119.99749 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47186 * 125.00137 * 5 4 3 7 7 S 1.65602 * 119.99883 * 164.99961 * 6 5 4 8 8 O 1.42102 * 106.40101 * 178.54092 * 7 6 5 9 9 O 1.42105 * 106.40293 * 311.45759 * 7 6 5 10 10 C 1.76194 * 107.21945 * 64.99964 * 7 6 5 11 11 C 1.38635 * 119.75148 * 269.72899 * 10 7 6 12 12 C 1.37611 * 120.24810 * 179.72645 * 11 10 7 13 13 C 1.40714 * 119.74434 * 0.55998 * 12 11 10 14 14 C 1.41400 * 120.24048 * 179.68681 * 13 12 11 15 15 H 1.08002 * 119.99680 * 204.41090 * 14 13 12 16 16 C 1.39942 * 120.00299 * 24.41200 * 14 13 12 17 17 N 1.30821 * 120.00237 * 17.84379 * 16 14 13 18 18 Si 1.86800 * 119.99946 * 197.84703 * 16 14 13 19 19 H 1.48503 * 109.47520 * 59.99781 * 18 16 14 20 20 H 1.48500 * 109.47029 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46998 * 299.99776 * 18 16 14 22 22 C 1.40710 * 119.51436 * 359.71380 * 13 12 11 23 23 C 1.37615 * 119.74572 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.46957 * 300.00071 * 1 2 3 25 25 H 1.08997 * 109.46645 * 60.00204 * 1 2 3 26 26 H 1.08999 * 109.46828 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47668 * 239.99736 * 2 1 3 28 28 H 1.09007 * 109.47130 * 119.99573 * 2 1 3 29 29 H 1.08005 * 119.99607 * 305.00202 * 3 2 1 30 30 H 1.07995 * 120.00340 * 0.02562 * 4 3 2 31 31 H 1.09001 * 109.47176 * 4.99979 * 5 4 3 32 32 H 1.09008 * 109.46917 * 245.00367 * 5 4 3 33 33 H 0.97001 * 120.00323 * 344.99841 * 6 5 4 34 34 H 1.08004 * 119.87204 * 359.97438 * 11 10 7 35 35 H 1.08000 * 120.12973 * 180.27716 * 12 11 10 36 36 H 0.96992 * 120.00351 * 179.97438 * 17 16 14 37 37 H 1.08004 * 120.12813 * 179.97438 * 22 13 12 38 38 H 1.07998 * 119.88166 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8642 1.8215 0.9294 5 6 3.3660 3.2425 0.9296 6 7 3.0834 3.8599 2.2277 7 16 3.8364 5.2718 2.6545 8 8 3.3316 5.6245 3.9351 9 8 5.2198 5.0849 2.3889 10 6 3.2796 6.5175 1.5398 11 6 3.9747 6.7479 0.3626 12 6 3.5457 7.7145 -0.5179 13 6 2.4036 8.4783 -0.2141 14 6 1.9574 9.4786 -1.1083 15 1 1.3654 10.3046 -0.7426 16 6 2.2827 9.3984 -2.4670 17 7 2.6827 8.2624 -2.9779 18 14 2.1460 10.9134 -3.5512 19 1 3.0413 11.9775 -3.0301 20 1 2.5442 10.5665 -4.9391 21 1 0.7432 11.4005 -3.5463 22 6 1.7093 8.2396 0.9862 23 6 2.1526 7.2635 1.8490 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.7065 2.1087 -0.7662 30 1 3.1903 1.1335 1.6953 31 1 2.8641 3.8052 0.1426 32 1 4.4414 3.2480 0.7510 33 1 2.4552 3.4419 2.8372 34 1 4.8540 6.1638 0.1340 35 1 4.0861 7.8893 -1.4365 36 1 2.9078 8.2067 -3.9197 37 1 0.8317 8.8203 1.2295 38 1 1.6212 7.0782 2.7707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384761521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:01 Heat of formation + Delta-G solvation = -81.879817 kcal Electronic energy + Delta-G solvation = -20956.366877 eV Core-core repulsion = 17696.124066 eV Total energy + Delta-G solvation = -3260.242811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.38420 -38.20127 -37.68016 -36.78507 -35.80867 -35.32514 -32.06864 -31.45087 -31.29163 -27.62127 -26.61534 -23.34723 -23.10932 -22.92111 -20.81936 -20.19527 -19.42227 -18.63480 -18.18314 -17.27054 -17.18844 -16.03560 -15.87294 -15.68431 -15.26928 -15.08099 -14.92107 -14.39743 -14.22583 -14.08502 -13.95684 -13.59209 -13.19606 -13.11500 -13.01869 -12.92962 -12.88677 -12.80218 -12.73933 -12.58083 -12.01246 -11.83757 -11.64487 -11.55130 -11.35450 -11.22069 -10.53910 -9.94245 -9.78558 -9.55334 -8.87471 -6.65301 -0.31254 0.48441 1.05542 1.24414 1.35856 1.44647 1.49881 2.11369 2.32341 2.55877 2.94313 3.52959 3.57385 3.82984 4.09995 4.29028 4.30767 4.33478 4.41222 4.51333 4.61433 4.71206 4.83909 4.87726 4.94278 5.05127 5.11456 5.12644 5.20114 5.24033 5.39719 5.52177 5.59273 5.75591 5.76531 5.86196 5.92799 6.15002 6.22311 6.48569 6.67967 6.80735 8.07494 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.004431 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.733011 B = 6316.897217 C = 7720.898455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.138 4.138 4 C -0.172 4.172 5 C 0.143 3.857 6 N -1.107 6.107 7 S 2.727 3.273 8 O -1.002 7.002 9 O -1.003 7.003 10 C -0.797 4.797 11 C -0.021 4.021 12 C -0.207 4.207 13 C 0.111 3.889 14 C -0.468 4.468 15 H 0.091 0.909 16 C 0.036 3.964 17 N -0.794 5.794 18 Si 0.990 3.010 19 H -0.259 1.259 20 H -0.263 1.263 21 H -0.255 1.255 22 C -0.258 4.258 23 C -0.002 4.002 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.131 0.869 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.424 0.576 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.299 0.701 37 H 0.111 0.889 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 -11.627 0.432 11.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.158 4.158 4 C -0.191 4.191 5 C 0.018 3.982 6 N -0.867 5.867 7 S 2.823 3.177 8 O -0.992 6.992 9 O -0.993 6.993 10 C -0.890 4.890 11 C -0.041 4.041 12 C -0.227 4.227 13 C 0.108 3.892 14 C -0.494 4.494 15 H 0.109 0.891 16 C -0.183 4.183 17 N -0.417 5.417 18 Si 0.810 3.190 19 H -0.184 1.184 20 H -0.187 1.187 21 H -0.179 1.179 22 C -0.279 4.279 23 C -0.022 4.022 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.148 0.852 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.260 0.740 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.999 -11.603 0.791 11.801 hybrid contribution -0.668 0.892 -0.909 1.438 sum -2.667 -10.711 -0.118 11.039 Atomic orbital electron populations 1.21723 0.94776 1.02321 1.01842 1.20697 0.96409 0.92852 1.03272 1.23187 0.95952 0.98448 0.98190 1.22813 1.00131 0.95177 1.00999 1.20364 1.01143 0.92789 0.83899 1.55299 1.62353 1.41185 1.27908 1.00231 0.72621 0.72551 0.72341 1.93461 1.81517 1.83932 1.40326 1.93456 1.33195 1.86304 1.86364 1.29641 1.14562 1.27188 1.17611 1.20466 0.96112 0.95783 0.91691 1.21355 0.99017 1.01654 1.00698 1.18195 0.89437 0.89991 0.91585 1.20218 1.28553 1.07520 0.93156 0.89100 1.26974 0.91226 1.00185 0.99948 1.69828 1.28594 1.27060 1.16225 0.85112 0.80367 0.77044 0.76520 1.18362 1.18690 1.17862 1.21277 1.03164 1.04595 0.98818 1.20463 0.92438 0.92741 0.96566 0.93067 0.92900 0.91259 0.90072 0.90592 0.87666 0.85169 0.92115 0.90052 0.74042 0.86606 0.87048 0.88988 0.87130 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.89 71.98 0.71 -1.49 16 2 C -0.10 -1.45 6.38 29.85 0.19 -1.26 16 3 C -0.14 -2.76 9.12 25.65 0.23 -2.53 16 4 C -0.17 -3.65 9.26 25.65 0.24 -3.42 16 5 C 0.14 3.91 6.66 85.64 0.57 4.48 16 6 N -1.11 -31.94 5.99 -190.78 -1.14 -33.09 16 7 S 2.73 102.33 5.73 -56.49 -0.32 102.00 16 8 O -1.00 -40.97 17.26 -128.00 -2.21 -43.18 16 9 O -1.00 -41.99 16.72 -128.00 -2.14 -44.13 16 10 C -0.80 -34.96 5.97 22.46 0.13 -34.83 16 11 C -0.02 -0.96 9.49 22.22 0.21 -0.75 16 12 C -0.21 -10.62 8.70 22.73 0.20 -10.42 16 13 C 0.11 5.79 5.57 -21.29 -0.12 5.68 16 14 C -0.47 -23.40 9.05 23.46 0.21 -23.19 16 15 H 0.09 4.29 7.91 -2.91 -0.02 4.27 16 16 C 0.04 1.67 5.14 85.26 0.44 2.11 16 17 N -0.79 -37.85 10.95 21.83 0.24 -37.61 16 18 Si 0.99 34.36 29.59 68.60 2.03 36.39 16 19 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 20 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 21 H -0.25 -8.51 7.11 99.48 0.71 -7.80 16 22 C -0.26 -12.44 9.80 22.73 0.22 -12.21 16 23 C 0.00 -0.10 9.49 22.22 0.21 0.11 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.02 7.79 -2.38 -0.02 1.00 16 29 H 0.11 2.28 7.84 -2.91 -0.02 2.26 16 30 H 0.13 2.32 7.84 -2.91 -0.02 2.30 16 31 H 0.06 1.79 7.79 -2.39 -0.02 1.78 16 32 H 0.08 2.26 7.75 -2.38 -0.02 2.24 16 33 H 0.42 10.01 8.64 -96.74 -0.84 9.17 16 34 H 0.12 4.98 7.59 -2.91 -0.02 4.95 16 35 H 0.11 5.83 6.16 -2.91 -0.02 5.81 16 36 H 0.30 12.65 8.30 -92.71 -0.77 11.89 16 37 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 38 H 0.13 4.96 7.60 -2.91 -0.02 4.93 16 Total: -1.00 -62.42 337.95 0.13 -62.29 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: 0.23 Total: 35.04 kcal Atomic # 6 Polarization: -81.16 SS G_CDS: 3.45 Total: -77.71 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -0.90 Total: -70.70 kcal Atomic # 8 Polarization: -82.97 SS G_CDS: -4.35 Total: -87.32 kcal Atomic # 14 Polarization: 34.36 SS G_CDS: 2.03 Total: 36.39 kcal Atomic # 16 Polarization: 102.33 SS G_CDS: -0.32 Total: 102.00 kcal Total: -62.42 0.13 -62.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384761521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.590 kcal (2) G-P(sol) polarization free energy of solvation -62.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds