Wall clock time and date at job start Tue Mar 31 2020 06:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99868 * 2 1 4 4 C 1.50694 * 120.00010 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47533 * 94.99777 * 4 2 1 6 6 N 1.46494 * 109.47693 * 179.97438 * 5 4 2 7 7 S 1.65597 * 120.00241 * 164.72209 * 6 5 4 8 8 O 1.42103 * 106.40620 * 178.54272 * 7 6 5 9 9 O 1.42100 * 106.40630 * 311.46546 * 7 6 5 10 10 C 1.76208 * 107.21734 * 65.00320 * 7 6 5 11 11 C 1.38632 * 119.74525 * 269.73112 * 10 7 6 12 12 C 1.37628 * 120.24207 * 179.72238 * 11 10 7 13 13 C 1.40708 * 119.74460 * 0.56531 * 12 11 10 14 14 C 1.41395 * 120.24350 * 179.68162 * 13 12 11 15 15 H 1.07999 * 120.00421 * 204.40366 * 14 13 12 16 16 C 1.39948 * 120.00045 * 24.41232 * 14 13 12 17 17 N 1.30828 * 119.99938 * 17.83864 * 16 14 13 18 18 Si 1.86804 * 120.00206 * 197.84763 * 16 14 13 19 19 H 1.48496 * 109.47170 * 89.99474 * 18 16 14 20 20 H 1.48494 * 109.47127 * 209.99890 * 18 16 14 21 21 H 1.48504 * 109.46764 * 329.99426 * 18 16 14 22 22 C 1.40718 * 119.51587 * 359.70628 * 13 12 11 23 23 C 1.37620 * 119.73960 * 0.02562 * 22 13 12 24 24 H 1.07998 * 120.00217 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99975 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47764 * 270.00116 * 3 2 1 27 27 H 1.08999 * 109.47177 * 30.00684 * 3 2 1 28 28 H 1.09006 * 109.47340 * 150.00055 * 3 2 1 29 29 H 1.09001 * 109.47613 * 334.99928 * 4 2 1 30 30 H 1.09002 * 109.47351 * 214.99695 * 4 2 1 31 31 H 1.09011 * 109.47083 * 59.99417 * 5 4 2 32 32 H 1.08997 * 109.47087 * 300.00586 * 5 4 2 33 33 H 0.96999 * 119.99814 * 345.00344 * 6 5 4 34 34 H 1.07992 * 119.88185 * 359.96919 * 11 10 7 35 35 H 1.07997 * 120.12556 * 180.27286 * 12 11 10 36 36 H 0.96994 * 120.00050 * 180.02562 * 17 16 14 37 37 H 1.07995 * 120.13001 * 179.97438 * 22 13 12 38 38 H 1.08005 * 119.87252 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 7 3.1604 -2.9517 -1.4383 7 16 3.3529 -3.7962 -2.8497 8 8 4.1250 -4.9450 -2.5279 9 8 2.0685 -3.8672 -3.4533 10 6 4.3499 -2.8094 -3.9160 11 6 3.7484 -1.9092 -4.7819 12 6 4.5176 -1.1293 -5.6152 13 6 5.9187 -1.2568 -5.5943 14 6 6.7187 -0.4657 -6.4507 15 1 7.7041 -0.8042 -6.7346 16 6 6.2335 0.7563 -6.9303 17 7 5.2214 1.3361 -6.3379 18 14 7.0310 1.5593 -8.4165 19 1 6.3575 1.0896 -9.6538 20 1 6.9005 3.0348 -8.3115 21 1 8.4690 1.1918 -8.4656 22 6 6.5180 -2.1779 -4.7153 23 6 5.7294 -2.9435 -3.8871 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 2.2452 1.6199 -1.0276 27 1 1.4744 2.0647 0.5139 28 1 3.0159 1.1748 0.5138 29 1 1.4386 -2.0857 0.4334 30 1 2.9742 -1.1991 0.5889 31 1 3.0523 -0.9027 -1.8718 32 1 1.5167 -1.7893 -2.0272 33 1 3.5294 -3.2989 -0.6112 34 1 2.6726 -1.8167 -4.7999 35 1 4.0472 -0.4255 -6.2858 36 1 4.8849 2.1829 -6.6706 37 1 7.5924 -2.2842 -4.6914 38 1 6.1871 -3.6508 -3.2113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387520629.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:04 Heat of formation + Delta-G solvation = -79.834237 kcal Electronic energy + Delta-G solvation = -21250.833093 eV Core-core repulsion = 17990.678985 eV Total energy + Delta-G solvation = -3260.154108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.38353 -38.29532 -37.94335 -36.78849 -35.80645 -35.31982 -32.06721 -31.29211 -29.74246 -28.03743 -27.61967 -24.13820 -23.28231 -22.94404 -20.54358 -19.43408 -19.30051 -18.51169 -18.09273 -17.23724 -17.13645 -16.11754 -15.91688 -15.81698 -15.42933 -15.16964 -14.93270 -14.26763 -14.12815 -14.09656 -13.95856 -13.59456 -13.40846 -13.12854 -13.02631 -12.90789 -12.88862 -12.74171 -12.60119 -12.46982 -12.22704 -11.97910 -11.79505 -11.54818 -11.32483 -11.23109 -10.39945 -9.89518 -9.78943 -9.55135 -8.87389 -6.65121 -0.29985 0.48204 1.05636 1.34132 1.36070 1.43866 1.50792 2.11597 2.26395 2.53200 2.93817 3.52639 3.60043 3.94822 4.00161 4.11924 4.30031 4.32037 4.36998 4.62829 4.68406 4.72270 4.86611 4.88380 4.94739 5.02494 5.09406 5.10708 5.17720 5.23668 5.24406 5.52341 5.59390 5.75913 5.77070 5.93077 5.99723 6.15090 6.21934 6.48957 6.68237 6.80878 8.07700 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013936 B = 0.004820 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.751544 B = 5808.220895 C = 7257.676100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 C -0.123 4.123 4 C -0.085 4.085 5 C 0.121 3.879 6 N -1.110 6.110 7 S 2.727 3.273 8 O -1.001 7.001 9 O -1.004 7.004 10 C -0.797 4.797 11 C -0.020 4.020 12 C -0.207 4.207 13 C 0.111 3.889 14 C -0.467 4.467 15 H 0.091 0.909 16 C 0.036 3.964 17 N -0.794 5.794 18 Si 0.990 3.010 19 H -0.261 1.261 20 H -0.263 1.263 21 H -0.254 1.254 22 C -0.258 4.258 23 C -0.002 4.002 24 H 0.102 0.898 25 H 0.108 0.892 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.425 0.575 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.299 0.701 37 H 0.111 0.889 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 2.271 9.535 10.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.138 4.138 3 C -0.180 4.180 4 C -0.124 4.124 5 C -0.005 4.005 6 N -0.871 5.871 7 S 2.822 3.178 8 O -0.992 6.992 9 O -0.994 6.994 10 C -0.890 4.890 11 C -0.040 4.040 12 C -0.227 4.227 13 C 0.108 3.892 14 C -0.493 4.493 15 H 0.109 0.891 16 C -0.184 4.184 17 N -0.417 5.417 18 Si 0.810 3.190 19 H -0.186 1.186 20 H -0.187 1.187 21 H -0.178 1.178 22 C -0.278 4.278 23 C -0.022 4.022 24 H 0.121 0.879 25 H 0.126 0.874 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.261 0.739 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.235 1.724 9.229 10.749 hybrid contribution 0.844 0.887 -0.613 1.369 sum -4.391 2.611 8.616 10.016 Atomic orbital electron populations 1.23910 0.95147 1.02716 1.01180 1.21744 0.95744 0.95588 1.00682 1.20920 1.00498 0.94450 1.02145 1.20857 1.01483 0.95374 0.94700 1.21283 0.95696 0.84160 0.99352 1.55276 1.70626 1.35790 1.25407 1.00235 0.72514 0.72493 0.72559 1.93463 1.72547 1.48615 1.84562 1.93456 1.41566 1.86918 1.77499 1.29636 1.07370 1.26300 1.25696 1.20448 0.98136 0.92168 0.93273 1.21353 0.94066 1.03317 1.03977 1.18197 0.92881 0.89580 0.88545 1.20239 1.02827 1.02696 1.23586 0.89115 1.26979 0.94710 0.97112 0.99565 1.69839 1.20842 1.15342 1.35661 0.85061 0.79723 0.77536 0.76700 1.18562 1.18696 1.17753 1.21283 0.98651 1.05060 1.02804 1.20465 0.91823 0.94365 0.95529 0.87925 0.87423 0.92178 0.90701 0.91389 0.89448 0.89297 0.92339 0.91216 0.73872 0.86822 0.87100 0.89018 0.87081 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.58 13.89 67.78 0.94 -2.64 16 2 C -0.14 -2.76 5.31 -16.49 -0.09 -2.85 16 3 C -0.12 -2.36 10.03 71.24 0.71 -1.65 16 4 C -0.09 -1.72 5.52 29.85 0.16 -1.56 16 5 C 0.12 3.25 6.21 86.38 0.54 3.79 16 6 N -1.11 -31.14 6.00 -187.49 -1.12 -32.26 16 7 S 2.73 101.80 5.73 -56.49 -0.32 101.48 16 8 O -1.00 -40.59 17.26 -128.00 -2.21 -42.80 16 9 O -1.00 -42.17 16.72 -128.00 -2.14 -44.31 16 10 C -0.80 -34.89 5.97 22.46 0.13 -34.75 16 11 C -0.02 -0.95 9.49 22.22 0.21 -0.74 16 12 C -0.21 -10.61 8.70 22.73 0.20 -10.42 16 13 C 0.11 5.78 5.57 -21.29 -0.12 5.66 16 14 C -0.47 -23.30 9.05 23.46 0.21 -23.08 16 15 H 0.09 4.29 7.91 -2.91 -0.02 4.27 16 16 C 0.04 1.65 5.14 85.26 0.44 2.09 16 17 N -0.79 -37.79 10.95 21.83 0.24 -37.56 16 18 Si 0.99 34.35 29.60 68.60 2.03 36.38 16 19 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 20 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 21 H -0.25 -8.56 7.11 99.48 0.71 -7.86 16 22 C -0.26 -12.35 9.80 22.73 0.22 -12.12 16 23 C 0.00 -0.09 9.49 22.22 0.21 0.12 16 24 H 0.10 1.79 7.99 -2.91 -0.02 1.77 16 25 H 0.11 1.75 8.04 -2.91 -0.02 1.72 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.20 8.06 -2.39 -0.02 1.18 16 28 H 0.07 1.22 8.09 -2.38 -0.02 1.20 16 29 H 0.09 1.55 7.99 -2.39 -0.02 1.53 16 30 H 0.09 1.56 8.10 -2.39 -0.02 1.54 16 31 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.07 1.98 7.75 -2.39 -0.02 1.96 16 33 H 0.42 9.33 8.65 -96.75 -0.84 8.49 16 34 H 0.11 4.94 7.59 -2.91 -0.02 4.91 16 35 H 0.11 5.81 6.16 -2.91 -0.02 5.79 16 36 H 0.30 12.59 8.30 -92.71 -0.77 11.83 16 37 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.13 4.94 7.60 -2.91 -0.02 4.91 16 Total: -1.00 -62.65 338.29 0.47 -62.18 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: 0.22 Total: 35.03 kcal Atomic # 6 Polarization: -81.92 SS G_CDS: 3.78 Total: -78.14 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -0.89 Total: -69.82 kcal Atomic # 8 Polarization: -82.76 SS G_CDS: -4.35 Total: -87.11 kcal Atomic # 14 Polarization: 34.35 SS G_CDS: 2.03 Total: 36.38 kcal Atomic # 16 Polarization: 101.80 SS G_CDS: -0.32 Total: 101.48 kcal Total: -62.65 0.47 -62.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387520629.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.656 kcal (2) G-P(sol) polarization free energy of solvation -62.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds