Wall clock time and date at job start Tue Mar 31 2020 07:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.47436 * 119.99618 * 2 1 3 13 13 S 1.65593 * 120.00643 * 265.00682 * 12 2 1 14 14 O 1.42093 * 104.28033 * 181.07068 * 13 12 2 15 15 O 1.42109 * 104.27422 * 308.92490 * 13 12 2 16 16 C 1.81401 * 104.45038 * 64.99594 * 13 12 2 17 17 H 1.09002 * 115.54752 * 39.41684 * 16 13 12 18 18 C 1.52997 * 117.49867 * 253.75000 * 16 13 12 19 19 C 1.52998 * 117.49874 * 185.08877 * 16 13 12 20 20 H 1.08998 * 117.49867 * 0.02562 * 19 16 13 21 21 C 1.50697 * 117.49628 * 214.98088 * 19 16 13 22 22 C 1.38237 * 120.00230 * 299.72500 * 21 19 16 23 23 C 1.38234 * 119.99979 * 179.81328 * 22 21 19 24 24 C 1.38236 * 120.00027 * 0.39991 * 23 22 21 25 25 C 1.38235 * 120.00032 * 359.85280 * 24 23 22 26 26 C 1.38229 * 119.99785 * 359.96155 * 25 24 23 27 27 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 28 28 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 29 29 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 30 30 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 31 31 H 0.97007 * 119.99464 * 85.00344 * 12 2 1 32 32 H 1.08998 * 117.50112 * 359.97438 * 18 16 13 33 33 H 1.09000 * 117.49816 * 145.02172 * 18 16 13 34 34 H 1.08002 * 119.99757 * 359.97438 * 22 21 19 35 35 H 1.08006 * 120.00049 * 180.22992 * 23 22 21 36 36 H 1.07998 * 119.99629 * 179.83561 * 24 23 22 37 37 H 1.08003 * 119.99776 * 179.97438 * 25 24 23 38 38 H 1.08006 * 119.99982 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 3.6305 -0.5437 -4.4119 10 1 2.4881 -2.5651 -3.7122 11 1 1.3445 -0.9488 -5.1123 12 7 2.0184 -0.6905 1.1962 13 16 2.4122 0.1772 2.5505 14 8 2.8606 -0.8028 3.4765 15 8 3.2875 1.1907 2.0751 16 6 0.8407 0.8988 3.0985 17 1 -0.0304 0.2494 3.0117 18 6 0.6315 2.3964 2.8651 19 6 0.8832 1.8697 4.2802 20 1 1.8554 2.0752 4.7281 21 6 -0.2828 1.8554 5.2348 22 6 -1.5550 2.1422 4.7763 23 6 -2.6252 2.1252 5.6512 24 6 -2.4219 1.8295 6.9862 25 6 -1.1489 1.5478 7.4457 26 6 -0.0794 1.5610 6.5700 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 0.7087 1.1613 -3.4844 31 1 2.1111 -1.6561 1.1949 32 1 1.4383 2.9481 2.3826 33 1 -0.3773 2.7322 2.6252 34 1 -1.7132 2.3770 3.7341 35 1 -3.6197 2.3457 5.2923 36 1 -3.2576 1.8189 7.6702 37 1 -0.9901 1.3172 8.4888 38 1 0.9152 1.3414 6.9291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416384813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:22 Heat of formation + Delta-G solvation = -45.720678 kcal Electronic energy + Delta-G solvation = -21463.117614 eV Core-core repulsion = 18204.442781 eV Total energy + Delta-G solvation = -3258.674833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60091 -38.30708 -37.76768 -37.23534 -36.98734 -34.10199 -31.87733 -31.49367 -30.06045 -27.26164 -25.06217 -24.49090 -23.27714 -22.74607 -21.45214 -20.21282 -19.16186 -18.55761 -17.83401 -17.56106 -17.09025 -16.49985 -16.10227 -15.83544 -15.46217 -15.12385 -14.53819 -14.44648 -14.17478 -14.01369 -13.86736 -13.52873 -13.30269 -13.13667 -12.99793 -12.94289 -12.82255 -12.53314 -12.47353 -12.22577 -12.12532 -11.97864 -11.90125 -11.75341 -11.50267 -11.07724 -10.57149 -10.05432 -9.83015 -9.55954 -8.13746 -6.26581 -0.62797 0.32178 0.49478 1.44332 1.46041 1.55051 1.85008 2.24167 2.45298 2.84677 2.91220 3.15973 3.32844 3.45963 3.61524 3.79402 3.89013 4.14819 4.16646 4.29272 4.51828 4.57393 4.62333 4.67826 4.82204 4.89748 4.95147 5.06587 5.09180 5.16581 5.18975 5.56690 5.60512 5.62137 5.66280 5.80835 6.07357 6.09814 6.16007 6.43341 6.83067 7.42234 8.91316 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.025337 B = 0.003992 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.828242 B = 7011.553377 C = 7659.513339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.272 3.728 3 H 0.025 0.975 4 C -0.545 4.545 5 H 0.059 0.941 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.958 3.042 9 H -0.280 1.280 10 H -0.269 1.269 11 H -0.279 1.279 12 N -1.105 6.105 13 S 2.643 3.357 14 O -0.997 6.997 15 O -0.993 6.993 16 C -0.661 4.661 17 H 0.173 0.827 18 C -0.112 4.112 19 C -0.061 4.061 20 H 0.131 0.869 21 C -0.071 4.071 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.125 4.125 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.266 0.734 31 H 0.412 0.588 32 H 0.116 0.884 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.258 3.553 16.928 19.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.166 3.834 3 H 0.043 0.957 4 C -0.585 4.585 5 H 0.077 0.923 6 C -0.181 4.181 7 N -0.549 5.549 8 Si 0.784 3.216 9 H -0.206 1.206 10 H -0.194 1.194 11 H -0.204 1.204 12 N -0.864 5.864 13 S 2.738 3.262 14 O -0.988 6.988 15 O -0.983 6.983 16 C -0.772 4.772 17 H 0.191 0.809 18 C -0.149 4.149 19 C -0.081 4.081 20 H 0.148 0.852 21 C -0.072 4.072 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.143 4.143 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.246 0.754 32 H 0.134 0.866 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.472 3.931 17.146 19.112 hybrid contribution -0.146 -0.905 -1.263 1.561 sum -7.618 3.026 15.883 17.873 Atomic orbital electron populations 1.22159 0.97212 1.00231 1.01371 1.18331 0.91694 0.91721 0.81642 0.95729 1.21612 1.32021 1.13358 0.91468 0.92304 1.25618 0.95106 0.95760 1.01605 1.69959 1.36896 1.23531 1.24478 0.85553 0.77996 0.79051 0.78994 1.20635 1.19353 1.20422 1.55359 1.84206 1.19288 1.27517 1.03481 0.76339 0.73650 0.72759 1.93496 1.80911 1.59552 1.64793 1.93535 1.62594 1.62301 1.79862 1.32607 1.23773 1.05560 1.15247 0.80943 1.23176 1.06529 0.88532 0.96697 1.21017 1.00000 0.98561 0.88525 0.85163 1.19096 0.93074 1.01304 0.93709 1.21320 0.92222 1.00054 1.00909 1.21454 0.99405 0.99585 0.93869 1.21549 0.97855 0.98749 0.96079 1.21457 0.92563 0.99477 1.00654 1.21289 1.00599 0.99763 0.92656 0.93439 0.91125 0.94483 0.92506 0.75395 0.86554 0.84770 0.85072 0.84009 0.83614 0.83659 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.48 9.26 71.98 0.67 -5.82 16 2 C 0.27 13.01 2.80 44.24 0.12 13.14 16 3 H 0.02 1.31 7.48 -2.38 -0.02 1.30 16 4 C -0.55 -29.15 8.76 25.60 0.22 -28.92 16 5 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -49.62 11.32 21.45 0.24 -49.38 16 8 Si 0.96 42.49 29.54 68.60 2.03 44.51 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 12 N -1.10 -45.24 5.35 -172.53 -0.92 -46.16 16 13 S 2.64 98.33 5.80 -56.49 -0.33 98.00 16 14 O -1.00 -40.24 18.08 -127.65 -2.31 -42.55 16 15 O -0.99 -43.72 16.70 -127.65 -2.13 -45.85 16 16 C -0.66 -18.83 4.80 30.59 0.15 -18.68 16 17 H 0.17 4.50 7.67 -2.39 -0.02 4.48 16 18 C -0.11 -2.85 9.50 30.62 0.29 -2.55 16 19 C -0.06 -1.49 5.81 -11.52 -0.07 -1.56 16 20 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 21 C -0.07 -1.60 5.61 -19.87 -0.11 -1.71 16 22 C -0.13 -2.61 9.30 22.27 0.21 -2.40 16 23 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 24 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 25 C -0.12 -2.05 10.05 22.27 0.22 -1.82 16 26 C -0.13 -2.51 9.74 22.27 0.22 -2.29 16 27 H 0.05 1.67 6.25 -2.39 -0.01 1.66 16 28 H 0.07 3.42 6.07 -2.39 -0.01 3.40 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.27 13.75 8.31 -92.70 -0.77 12.98 16 31 H 0.41 15.80 8.79 -96.74 -0.85 14.95 16 32 H 0.12 3.16 7.68 -2.39 -0.02 3.15 16 33 H 0.13 2.84 6.17 -2.39 -0.01 2.83 16 34 H 0.13 2.46 6.02 -2.91 -0.02 2.44 16 35 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 37 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -67.90 329.87 -0.37 -68.27 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.23 Total: 27.92 kcal Atomic # 6 Polarization: -57.59 SS G_CDS: 2.82 Total: -54.77 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -0.68 Total: -95.54 kcal Atomic # 8 Polarization: -83.96 SS G_CDS: -4.44 Total: -88.40 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 98.33 SS G_CDS: -0.33 Total: 98.00 kcal Total: -67.90 -0.37 -68.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416384813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.551 kcal (2) G-P(sol) polarization free energy of solvation -67.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds