Wall clock time and date at job start Tue Mar 31 2020 07:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46930 * 2 1 4 4 C 1.50698 * 109.47137 * 120.00023 * 2 1 3 5 5 H 1.08000 * 119.99947 * 119.99814 * 4 2 1 6 6 C 1.37877 * 119.99885 * 299.99993 * 4 2 1 7 7 N 1.31516 * 120.00191 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99896 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47044 * 60.00254 * 8 6 4 10 10 H 1.48506 * 109.47237 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47450 * 300.00153 * 8 6 4 12 12 N 1.46502 * 109.46978 * 239.99914 * 2 1 3 13 13 S 1.65597 * 119.99935 * 95.00122 * 12 2 1 14 14 O 1.42102 * 104.28146 * 308.92815 * 13 12 2 15 15 O 1.42102 * 104.27883 * 181.06861 * 13 12 2 16 16 C 1.81404 * 104.45207 * 64.99875 * 13 12 2 17 17 H 1.09004 * 115.54760 * 39.32636 * 16 13 12 18 18 C 1.53001 * 117.51767 * 253.63270 * 16 13 12 19 19 C 1.52990 * 117.49980 * 185.00088 * 16 13 12 20 20 H 1.09000 * 117.50582 * 359.97438 * 19 16 13 21 21 C 1.50706 * 117.49776 * 214.99994 * 19 16 13 22 22 C 1.38238 * 119.99775 * 120.00162 * 21 19 16 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 19 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38233 * 120.00212 * 300.02208 * 21 19 16 27 27 H 1.09001 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47052 * 300.00150 * 1 2 3 29 29 H 1.08998 * 109.47337 * 59.99930 * 1 2 3 30 30 H 0.97003 * 120.00282 * 180.02562 * 7 6 4 31 31 H 0.97001 * 119.99854 * 274.99684 * 12 2 1 32 32 H 1.08997 * 117.49588 * 145.03019 * 18 16 13 33 33 H 1.08998 * 117.49710 * 359.97438 * 18 16 13 34 34 H 1.08005 * 120.00068 * 359.97438 * 22 21 19 35 35 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 36 36 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 37 37 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 38 38 H 1.07999 * 119.99956 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.8064 -1.1209 4.0081 10 1 1.8269 -0.4199 5.2205 11 1 1.8258 -2.5202 4.0077 12 7 2.0183 -0.6906 -1.1962 13 16 2.4122 0.1771 -2.5505 14 8 1.2751 0.9966 -2.7847 15 8 2.8123 -0.8076 -3.4936 16 6 3.8313 1.1872 -2.0441 17 1 4.5529 0.6920 -1.3943 18 6 3.5923 2.6824 -1.8241 19 6 4.3699 2.2044 -3.0520 20 1 3.8719 2.2665 -4.0196 21 6 5.8576 2.4450 -3.0705 22 6 6.5832 2.1992 -4.2211 23 6 7.9477 2.4204 -4.2382 24 6 8.5863 2.8879 -3.1048 25 6 7.8616 3.1286 -1.9526 26 6 6.4965 2.9110 -1.9367 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.7087 1.1613 3.4844 31 1 2.1110 -1.6562 -1.1948 32 1 4.1566 3.1707 -1.0297 33 1 2.5821 3.0594 -1.9841 34 1 6.0841 1.8344 -5.1067 35 1 8.5147 2.2280 -5.1370 36 1 9.6523 3.0611 -3.1184 37 1 8.3612 3.4896 -1.0659 38 1 5.9297 3.1023 -1.0375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416384816.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:25 Heat of formation + Delta-G solvation = -26.266272 kcal Electronic energy + Delta-G solvation = -21473.541522 eV Core-core repulsion = 18215.710296 eV Total energy + Delta-G solvation = -3257.831227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.70637 -36.98986 -36.46233 -35.49270 -35.31059 -32.19439 -31.07622 -30.63294 -28.24145 -25.21866 -24.11159 -23.32902 -22.37926 -20.93269 -20.52858 -18.66254 -17.65276 -17.17098 -16.59962 -16.05657 -15.37007 -15.24059 -14.90707 -14.73908 -14.25339 -13.59746 -13.51043 -13.17859 -13.00320 -12.62067 -12.23757 -12.07962 -11.69182 -11.62839 -11.56318 -11.48683 -11.22354 -11.12533 -10.99037 -10.97066 -10.70980 -10.58948 -10.33891 -10.26075 -10.10087 -9.18170 -9.02808 -8.73223 -8.60282 -8.25336 -6.15286 -4.23765 0.84693 1.18651 1.29617 3.15682 3.23561 3.29026 3.30959 3.56427 3.82836 4.20997 4.33489 4.50202 4.63839 4.67015 4.75194 4.89246 5.01239 5.07444 5.16165 5.23812 5.36202 5.48333 5.68811 5.81439 5.93574 5.95296 6.01017 6.35078 6.35640 6.40175 6.51832 6.84660 6.87868 7.08917 7.12170 7.58218 7.71575 7.83493 8.03769 8.27980 8.79874 9.42846 10.90034 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.004840 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.961544 B = 5783.982976 C = 6941.246565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.275 3.725 3 H 0.042 0.958 4 C -0.528 4.528 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -1.100 6.100 13 S 2.636 3.364 14 O -0.958 6.958 15 O -0.979 6.979 16 C -0.662 4.662 17 H 0.161 0.839 18 C -0.111 4.111 19 C -0.076 4.076 20 H 0.121 0.879 21 C -0.050 4.050 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.118 4.118 26 C -0.114 4.114 27 H 0.030 0.970 28 H 0.090 0.910 29 H 0.026 0.974 30 H 0.265 0.735 31 H 0.408 0.592 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.087 5.307 -9.375 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.171 3.829 3 H 0.060 0.940 4 C -0.568 4.568 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.860 5.860 13 S 2.726 3.274 14 O -0.948 6.948 15 O -0.969 6.969 16 C -0.768 4.768 17 H 0.179 0.821 18 C -0.148 4.148 19 C -0.096 4.096 20 H 0.139 0.861 21 C -0.050 4.050 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.136 4.136 26 C -0.132 4.132 27 H 0.049 0.951 28 H 0.109 0.891 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.241 0.759 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.549 5.604 -10.051 15.611 hybrid contribution 0.962 -0.848 1.583 2.037 sum 11.511 4.757 -8.468 15.062 Atomic orbital electron populations 1.22227 0.98172 0.99885 1.01432 1.18505 0.91492 0.92069 0.80883 0.94007 1.21286 1.32082 1.13249 0.90137 0.91907 1.24908 0.94832 0.95003 0.99014 1.69871 1.35940 1.22590 1.24000 0.86555 0.79095 0.79798 0.81915 1.20278 1.21168 1.20146 1.55551 1.80753 1.18345 1.31378 1.03943 0.75327 0.74584 0.73580 1.93575 1.44978 1.71648 1.84565 1.93527 1.84859 1.57490 1.61064 1.32948 1.23523 1.06529 1.13830 0.82145 1.22973 1.02697 0.90524 0.98618 1.20822 0.92812 1.00864 0.95101 0.86109 1.19068 0.92831 0.98953 0.94176 1.21036 0.94216 0.99842 0.97889 1.21119 0.94484 0.99713 0.98469 1.21162 0.99819 0.99973 0.93355 1.21149 0.94042 1.00157 0.98234 1.21167 0.94769 0.99051 0.98183 0.95056 0.89136 0.95455 0.92527 0.75870 0.86818 0.85936 0.85723 0.85969 0.86179 0.85937 0.85429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 9.29 37.16 0.35 -3.46 16 2 C 0.27 6.49 2.66 -69.08 -0.18 6.31 16 3 H 0.04 1.02 7.72 -51.93 -0.40 0.62 16 4 C -0.53 -13.45 8.76 -34.44 -0.30 -13.75 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -23.73 11.32 55.43 0.63 -23.11 16 8 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 N -1.10 -22.21 5.35 -5.88 -0.03 -22.25 16 13 S 2.64 48.46 5.74 -107.50 -0.62 47.84 16 14 O -0.96 -19.78 16.42 -57.54 -0.94 -20.73 16 15 O -0.98 -19.66 18.08 -57.54 -1.04 -20.70 16 16 C -0.66 -10.27 5.86 -26.74 -0.16 -10.42 16 17 H 0.16 2.45 8.14 -51.93 -0.42 2.02 16 18 C -0.11 -1.55 9.49 -26.73 -0.25 -1.80 16 19 C -0.08 -1.02 5.81 -91.77 -0.53 -1.55 16 20 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 21 C -0.05 -0.64 5.61 -104.62 -0.59 -1.22 16 22 C -0.11 -1.29 9.74 -39.58 -0.39 -1.67 16 23 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 24 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 25 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 26 C -0.11 -1.38 9.30 -39.58 -0.37 -1.75 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 29 H 0.03 0.62 7.42 -51.93 -0.39 0.24 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.45 16 31 H 0.41 7.70 8.79 -34.47 -0.30 7.39 16 32 H 0.11 1.43 6.18 -51.93 -0.32 1.11 16 33 H 0.12 1.71 7.68 -51.93 -0.40 1.31 16 34 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.13 1.47 6.02 -52.49 -0.32 1.15 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -31.05 332.39 -10.67 -41.73 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -4.94 Total: 9.69 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: -3.71 Total: -32.63 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.60 Total: -45.35 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -1.98 Total: -41.42 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 48.46 SS G_CDS: -0.62 Total: 47.84 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.05 -10.67 -41.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416384816.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.459 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds