Wall clock time and date at job start Tue Mar 31 2020 07:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46930 * 2 1 4 4 C 1.50698 * 109.47137 * 120.00023 * 2 1 3 5 5 H 1.08000 * 119.99947 * 119.99814 * 4 2 1 6 6 C 1.37877 * 119.99885 * 299.99993 * 4 2 1 7 7 N 1.31516 * 120.00191 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99896 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47044 * 60.00254 * 8 6 4 10 10 H 1.48506 * 109.47237 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47450 * 300.00153 * 8 6 4 12 12 N 1.46502 * 109.46978 * 239.99914 * 2 1 3 13 13 S 1.65597 * 119.99935 * 95.00122 * 12 2 1 14 14 O 1.42102 * 104.28146 * 308.92815 * 13 12 2 15 15 O 1.42102 * 104.27883 * 181.06861 * 13 12 2 16 16 C 1.81404 * 104.45207 * 64.99875 * 13 12 2 17 17 H 1.09004 * 115.54760 * 39.32636 * 16 13 12 18 18 C 1.53001 * 117.51767 * 253.63270 * 16 13 12 19 19 C 1.52990 * 117.49980 * 185.00088 * 16 13 12 20 20 H 1.09000 * 117.50582 * 359.97438 * 19 16 13 21 21 C 1.50706 * 117.49776 * 214.99994 * 19 16 13 22 22 C 1.38238 * 119.99775 * 120.00162 * 21 19 16 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 19 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38233 * 120.00212 * 300.02208 * 21 19 16 27 27 H 1.09001 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47052 * 300.00150 * 1 2 3 29 29 H 1.08998 * 109.47337 * 59.99930 * 1 2 3 30 30 H 0.97003 * 120.00282 * 180.02562 * 7 6 4 31 31 H 0.97001 * 119.99854 * 274.99684 * 12 2 1 32 32 H 1.08997 * 117.49588 * 145.03019 * 18 16 13 33 33 H 1.08998 * 117.49710 * 359.97438 * 18 16 13 34 34 H 1.08005 * 120.00068 * 359.97438 * 22 21 19 35 35 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 36 36 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 37 37 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 38 38 H 1.07999 * 119.99956 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.8064 -1.1209 4.0081 10 1 1.8269 -0.4199 5.2205 11 1 1.8258 -2.5202 4.0077 12 7 2.0183 -0.6906 -1.1962 13 16 2.4122 0.1771 -2.5505 14 8 1.2751 0.9966 -2.7847 15 8 2.8123 -0.8076 -3.4936 16 6 3.8313 1.1872 -2.0441 17 1 4.5529 0.6920 -1.3943 18 6 3.5923 2.6824 -1.8241 19 6 4.3699 2.2044 -3.0520 20 1 3.8719 2.2665 -4.0196 21 6 5.8576 2.4450 -3.0705 22 6 6.5832 2.1992 -4.2211 23 6 7.9477 2.4204 -4.2382 24 6 8.5863 2.8879 -3.1048 25 6 7.8616 3.1286 -1.9526 26 6 6.4965 2.9110 -1.9367 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.7087 1.1613 3.4844 31 1 2.1110 -1.6562 -1.1948 32 1 4.1566 3.1707 -1.0297 33 1 2.5821 3.0594 -1.9841 34 1 6.0841 1.8344 -5.1067 35 1 8.5147 2.2280 -5.1370 36 1 9.6523 3.0611 -3.1184 37 1 8.3612 3.4896 -1.0659 38 1 5.9297 3.1023 -1.0375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416384816.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:24 Heat of formation + Delta-G solvation = -45.557643 kcal Electronic energy + Delta-G solvation = -21474.378059 eV Core-core repulsion = 18215.710296 eV Total energy + Delta-G solvation = -3258.667763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60574 -38.29323 -37.77216 -37.23454 -36.95699 -34.08811 -31.88994 -31.49627 -30.08746 -27.21042 -25.08207 -24.48552 -23.27191 -22.80117 -21.47981 -20.18451 -19.14111 -18.50380 -17.76066 -17.68031 -17.11240 -16.46560 -16.10352 -15.83374 -15.41280 -15.16505 -14.49561 -14.46239 -14.18987 -14.01208 -13.88192 -13.50461 -13.32561 -13.17108 -12.97195 -12.94719 -12.80148 -12.54113 -12.37851 -12.25528 -12.17664 -11.97758 -11.91885 -11.77641 -11.56895 -11.04602 -10.56272 -10.06333 -9.84302 -9.57012 -8.11800 -6.26252 -0.61124 0.31127 0.48130 1.46714 1.48116 1.55048 1.85117 2.23962 2.46010 2.83443 2.90501 3.17708 3.32407 3.46761 3.60997 3.78844 3.88417 4.13629 4.15914 4.28199 4.50262 4.56403 4.62538 4.66834 4.81461 4.88584 4.94671 5.08134 5.14238 5.15206 5.19464 5.55389 5.60725 5.60998 5.65270 5.76968 6.03780 6.08690 6.12017 6.43399 6.84601 7.43506 8.93007 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.004840 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.961544 B = 5783.982976 C = 6941.246565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.278 3.722 3 H 0.034 0.966 4 C -0.542 4.542 5 H 0.066 0.934 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.274 1.274 12 N -1.105 6.105 13 S 2.648 3.352 14 O -0.985 6.985 15 O -0.996 6.996 16 C -0.665 4.665 17 H 0.164 0.836 18 C -0.113 4.113 19 C -0.060 4.060 20 H 0.135 0.865 21 C -0.072 4.072 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.129 4.129 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.412 0.588 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.136 0.864 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.262 5.496 -9.588 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.173 3.827 3 H 0.051 0.949 4 C -0.581 4.581 5 H 0.084 0.916 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.784 3.216 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.864 5.864 13 S 2.742 3.258 14 O -0.975 6.975 15 O -0.987 6.987 16 C -0.775 4.775 17 H 0.182 0.818 18 C -0.151 4.151 19 C -0.080 4.080 20 H 0.152 0.848 21 C -0.073 4.073 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.144 4.144 26 C -0.147 4.147 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.246 0.754 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.693 5.754 -10.283 17.319 hybrid contribution 0.377 -0.848 1.581 1.833 sum 13.070 4.906 -8.702 16.450 Atomic orbital electron populations 1.22151 0.98868 0.99619 1.00577 1.18262 0.90964 0.91816 0.81654 0.94875 1.21585 1.32082 1.13434 0.90988 0.91625 1.25622 0.95012 0.95627 1.01633 1.69983 1.36813 1.23699 1.24541 0.85612 0.78730 0.78634 0.78614 1.19642 1.21057 1.19929 1.55415 1.81488 1.18812 1.30650 1.03409 0.75513 0.74145 0.72735 1.93534 1.47210 1.71886 1.84857 1.93499 1.85198 1.58561 1.61423 1.32577 1.22132 1.06805 1.16015 0.81790 1.23136 1.03102 0.89025 0.99820 1.21020 0.93819 0.98024 0.95166 0.84767 1.19121 0.92278 1.00718 0.95181 1.21301 0.95107 0.99878 0.97911 1.21473 0.94108 0.98856 0.99621 1.21549 1.01211 0.98612 0.92796 1.21443 0.93611 0.99921 0.99430 1.21310 0.95688 0.99642 0.98084 0.94969 0.90987 0.95223 0.92534 0.75379 0.85439 0.86148 0.84644 0.83440 0.83508 0.84167 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.47 9.29 71.98 0.67 -6.80 16 2 C 0.28 13.27 2.66 44.25 0.12 13.39 16 3 H 0.03 1.64 7.72 -2.39 -0.02 1.62 16 4 C -0.54 -27.51 8.76 25.60 0.22 -27.28 16 5 H 0.07 3.22 7.81 -2.91 -0.02 3.20 16 6 C 0.02 1.11 5.30 84.65 0.45 1.56 16 7 N -0.91 -49.06 11.32 21.45 0.24 -48.82 16 8 Si 0.96 40.92 29.54 68.60 2.03 42.94 16 9 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.29 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 12 N -1.10 -44.88 5.35 -172.52 -0.92 -45.80 16 13 S 2.65 97.58 5.74 -56.49 -0.32 97.25 16 14 O -0.98 -41.07 16.42 -127.65 -2.10 -43.16 16 15 O -1.00 -39.85 18.08 -127.65 -2.31 -42.16 16 16 C -0.67 -20.31 5.86 30.59 0.18 -20.14 16 17 H 0.16 4.93 8.14 -2.38 -0.02 4.91 16 18 C -0.11 -3.10 9.49 30.60 0.29 -2.81 16 19 C -0.06 -1.56 5.81 -11.54 -0.07 -1.62 16 20 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 21 C -0.07 -1.75 5.61 -19.86 -0.11 -1.86 16 22 C -0.12 -2.61 9.74 22.27 0.22 -2.39 16 23 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 24 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 25 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 26 C -0.13 -2.96 9.30 22.27 0.21 -2.75 16 27 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 29 H 0.03 1.38 7.42 -2.39 -0.02 1.36 16 30 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 31 H 0.41 15.65 8.79 -96.74 -0.85 14.80 16 32 H 0.13 3.11 6.18 -2.39 -0.01 3.09 16 33 H 0.12 3.35 7.68 -2.39 -0.02 3.33 16 34 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 38 H 0.13 2.80 6.02 -2.91 -0.02 2.78 16 Total: -1.00 -64.77 332.39 -0.31 -65.08 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.22 Total: 31.33 kcal Atomic # 6 Polarization: -59.52 SS G_CDS: 2.85 Total: -56.67 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -0.68 Total: -94.62 kcal Atomic # 8 Polarization: -80.92 SS G_CDS: -4.40 Total: -85.32 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: 97.58 SS G_CDS: -0.32 Total: 97.25 kcal Total: -64.77 -0.31 -65.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416384816.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.526 kcal (2) G-P(sol) polarization free energy of solvation -64.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds