Wall clock time and date at job start Tue Mar 31 2020 07:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47238 * 240.00157 * 2 1 3 5 5 C 1.50696 * 109.47116 * 175.00181 * 4 2 1 6 6 C 1.38285 * 119.97323 * 89.99837 * 5 4 2 7 7 C 1.38247 * 120.11130 * 179.69858 * 6 5 4 8 8 C 1.38161 * 120.05787 * 0.25492 * 7 6 5 9 9 C 1.38715 * 119.94093 * 0.02562 * 8 7 6 10 10 O 1.35904 * 120.05297 * 180.02562 * 9 8 7 11 11 C 1.38123 * 119.97081 * 270.24705 * 5 4 2 12 12 N 1.46502 * 109.47090 * 119.99818 * 2 1 3 13 13 C 1.34774 * 120.00214 * 275.00013 * 12 2 1 14 14 O 1.21287 * 119.99950 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00247 * 179.97438 * 13 12 2 16 16 S 1.81002 * 109.47039 * 179.97438 * 15 13 12 17 17 C 1.76206 * 99.99636 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99742 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99787 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00030 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99933 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47093 * 60.00174 * 21 19 17 23 23 H 1.48493 * 109.46842 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46863 * 300.00124 * 21 19 17 25 25 H 1.09002 * 109.47059 * 300.00131 * 1 2 3 26 26 H 1.08999 * 109.47011 * 59.99784 * 1 2 3 27 27 H 1.08995 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47175 * 54.99576 * 4 2 1 29 29 H 1.09005 * 109.46959 * 294.99973 * 4 2 1 30 30 H 1.08002 * 119.94679 * 359.97438 * 6 5 4 31 31 H 1.07998 * 119.97068 * 180.27347 * 7 6 5 32 32 H 1.07999 * 120.03538 * 179.97438 * 8 7 6 33 33 H 0.96704 * 113.99603 * 90.00753 * 10 9 8 34 34 H 1.08005 * 120.03130 * 0.02562 * 11 5 4 35 35 H 0.96992 * 119.99905 * 95.00231 * 12 2 1 36 36 H 1.09001 * 109.46812 * 300.00218 * 15 13 12 37 37 H 1.09004 * 109.46949 * 59.99835 * 15 13 12 38 38 H 0.96998 * 119.99832 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 6 4.3288 -1.5822 -0.7149 7 6 5.7069 -1.4908 -0.7767 8 6 6.3013 -0.4294 -1.4316 9 6 5.5142 0.5453 -2.0270 10 8 6.0965 1.5900 -2.6723 11 6 4.1313 0.4514 -1.9633 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8582 1.1585 2.4117 15 6 2.6488 -0.7287 3.5878 16 16 2.7106 0.4346 4.9731 17 6 3.3122 -0.6311 6.2408 18 1 3.5208 -1.6676 6.0210 19 6 3.5189 -0.1380 7.5218 20 7 3.2651 1.1255 7.7895 21 14 4.1574 -1.2675 8.8656 22 1 5.4834 -1.8068 8.4705 23 1 4.2905 -0.5039 10.1322 24 1 3.2052 -2.3900 9.0625 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -0.2617 -2.1370 29 1 1.7517 -1.7715 -1.2056 30 1 3.8661 -2.4129 -0.2028 31 1 6.3193 -2.2499 -0.3129 32 1 7.3779 -0.3582 -1.4793 33 1 6.2612 1.4297 -3.6116 34 1 3.5163 1.2091 -2.4262 35 1 2.2490 -1.6317 1.1527 36 1 1.9759 -1.5505 3.8326 37 1 3.6480 -1.1213 3.3986 38 1 3.4092 1.4700 8.6848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427622210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:17 Heat of formation + Delta-G solvation = -68.999802 kcal Electronic energy + Delta-G solvation = -20704.761148 eV Core-core repulsion = 17445.076857 eV Total energy + Delta-G solvation = -3259.684292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.14982 -39.17249 -37.24767 -35.61326 -32.46610 -32.39402 -30.88248 -29.97039 -28.50220 -26.71484 -25.45644 -22.81183 -22.36101 -21.13882 -20.21048 -18.29766 -17.76547 -16.58891 -16.46781 -16.14166 -15.67870 -15.31122 -14.89646 -14.78207 -14.20245 -14.10241 -13.78497 -13.53225 -13.16585 -12.82191 -12.56643 -12.48422 -12.41700 -11.95128 -11.89314 -11.66924 -11.58306 -11.04574 -11.02143 -11.00439 -10.74648 -10.60805 -9.79730 -9.32505 -9.06516 -9.03087 -8.80328 -8.73332 -8.20269 -6.46564 -6.18957 -3.89215 1.07167 1.15490 3.07700 3.17098 3.24939 3.29111 3.33229 3.43918 3.76183 3.97156 4.23031 4.49102 4.66835 4.77775 4.93012 5.03178 5.10130 5.15950 5.22809 5.25577 5.35627 5.41770 5.54220 5.63852 5.69097 5.73063 5.81155 5.92944 6.05087 6.17169 6.19429 6.23289 6.24912 6.37141 6.63601 6.73815 7.45144 7.61465 7.77771 8.37404 8.69231 9.26061 10.88447 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.003589 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.765830 B = 7800.061332 C = 8626.397466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 H 0.089 0.911 4 C -0.088 4.088 5 C -0.063 4.063 6 C -0.121 4.121 7 C -0.099 4.099 8 C -0.150 4.150 9 C 0.105 3.895 10 O -0.499 6.499 11 C -0.141 4.141 12 N -0.732 5.732 13 C 0.534 3.466 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.071 0.929 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.387 0.613 34 H 0.127 0.873 35 H 0.394 0.606 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 -7.602 -23.374 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.107 0.893 4 C -0.126 4.126 5 C -0.063 4.063 6 C -0.139 4.139 7 C -0.117 4.117 8 C -0.168 4.168 9 C 0.061 3.939 10 O -0.308 6.308 11 C -0.160 4.160 12 N -0.386 5.386 13 C 0.320 3.680 14 O -0.392 6.392 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.243 0.757 34 H 0.145 0.855 35 H 0.228 0.772 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.295 -5.196 -22.593 23.185 hybrid contribution 0.993 -2.714 0.374 2.914 sum 1.288 -7.910 -22.219 23.620 Atomic orbital electron populations 1.22193 0.95136 1.02074 1.02784 1.20849 0.93757 0.97725 0.83383 0.89308 1.20966 0.91096 1.02058 0.98490 1.19679 0.95522 0.94295 0.96787 1.21040 0.93677 0.99337 0.99819 1.21038 0.94878 0.97746 0.98054 1.21421 1.00348 0.94289 1.00747 1.18461 0.90553 0.87707 0.97163 1.84869 1.81767 1.37589 1.26619 1.21287 0.94089 0.98425 1.02179 1.46059 1.69369 1.13683 1.09493 1.20267 0.76777 0.87219 0.83767 1.90697 1.48303 1.15742 1.84423 1.23526 1.03556 1.04803 0.98475 1.85403 1.86318 1.12880 0.98701 1.22833 1.51097 0.98091 0.96420 0.91032 1.24983 0.95103 0.95514 0.97923 1.70009 1.45512 1.13200 1.21581 0.86238 0.79312 0.80035 0.79995 1.19948 1.20809 1.19952 0.91481 0.91888 0.92519 0.89392 0.90177 0.85938 0.85510 0.85575 0.75725 0.85483 0.77168 0.89360 0.89385 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.48 37.16 0.35 -1.39 16 2 C 0.15 1.72 2.56 -67.93 -0.17 1.54 16 3 H 0.09 1.28 7.58 -51.92 -0.39 0.89 16 4 C -0.09 -0.73 4.89 -27.89 -0.14 -0.87 16 5 C -0.06 -0.63 4.95 -104.65 -0.52 -1.15 16 6 C -0.12 -1.19 9.09 -39.56 -0.36 -1.55 16 7 C -0.10 -1.00 10.04 -39.61 -0.40 -1.39 16 8 C -0.15 -1.59 9.99 -39.43 -0.39 -1.98 16 9 C 0.11 1.17 6.71 -39.21 -0.26 0.91 16 10 O -0.50 -5.04 13.50 -19.44 -0.26 -5.30 16 11 C -0.14 -1.52 9.64 -39.43 -0.38 -1.90 16 12 N -0.73 -9.78 4.53 -53.80 -0.24 -10.02 16 13 C 0.53 10.12 7.81 -10.99 -0.09 10.03 16 14 O -0.52 -11.98 15.53 5.55 0.09 -11.89 16 15 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.46 9.50 30.94 0.29 -15.17 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.48 13.22 55.49 0.73 -25.74 16 21 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 29 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.12 0.97 7.57 -52.49 -0.40 0.57 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.39 1.79 9.06 45.56 0.41 2.21 16 34 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 35 H 0.39 4.13 7.82 -40.82 -0.32 3.81 16 36 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 37 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 38 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -36.67 343.74 -8.14 -44.81 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.46 Total: 4.05 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -1.94 Total: -13.79 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.49 Total: -35.76 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.18 Total: -17.19 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.67 -8.14 -44.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427622210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.187 kcal (2) G-P(sol) polarization free energy of solvation -36.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds