Wall clock time and date at job start Tue Mar 31 2020 07:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47238 * 240.00157 * 2 1 3 5 5 C 1.50696 * 109.47116 * 175.00181 * 4 2 1 6 6 C 1.38285 * 119.97323 * 89.99837 * 5 4 2 7 7 C 1.38247 * 120.11130 * 179.69858 * 6 5 4 8 8 C 1.38161 * 120.05787 * 0.25492 * 7 6 5 9 9 C 1.38715 * 119.94093 * 0.02562 * 8 7 6 10 10 O 1.35904 * 120.05297 * 180.02562 * 9 8 7 11 11 C 1.38123 * 119.97081 * 270.24705 * 5 4 2 12 12 N 1.46502 * 109.47090 * 119.99818 * 2 1 3 13 13 C 1.34774 * 120.00214 * 275.00013 * 12 2 1 14 14 O 1.21287 * 119.99950 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00247 * 179.97438 * 13 12 2 16 16 S 1.81002 * 109.47039 * 179.97438 * 15 13 12 17 17 C 1.76206 * 99.99636 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99742 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99787 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00030 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99933 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47093 * 60.00174 * 21 19 17 23 23 H 1.48493 * 109.46842 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46863 * 300.00124 * 21 19 17 25 25 H 1.09002 * 109.47059 * 300.00131 * 1 2 3 26 26 H 1.08999 * 109.47011 * 59.99784 * 1 2 3 27 27 H 1.08995 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47175 * 54.99576 * 4 2 1 29 29 H 1.09005 * 109.46959 * 294.99973 * 4 2 1 30 30 H 1.08002 * 119.94679 * 359.97438 * 6 5 4 31 31 H 1.07998 * 119.97068 * 180.27347 * 7 6 5 32 32 H 1.07999 * 120.03538 * 179.97438 * 8 7 6 33 33 H 0.96704 * 113.99603 * 90.00753 * 10 9 8 34 34 H 1.08005 * 120.03130 * 0.02562 * 11 5 4 35 35 H 0.96992 * 119.99905 * 95.00231 * 12 2 1 36 36 H 1.09001 * 109.46812 * 300.00218 * 15 13 12 37 37 H 1.09004 * 109.46949 * 59.99835 * 15 13 12 38 38 H 0.96998 * 119.99832 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 6 4.3288 -1.5822 -0.7149 7 6 5.7069 -1.4908 -0.7767 8 6 6.3013 -0.4294 -1.4316 9 6 5.5142 0.5453 -2.0270 10 8 6.0965 1.5900 -2.6723 11 6 4.1313 0.4514 -1.9633 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8582 1.1585 2.4117 15 6 2.6488 -0.7287 3.5878 16 16 2.7106 0.4346 4.9731 17 6 3.3122 -0.6311 6.2408 18 1 3.5208 -1.6676 6.0210 19 6 3.5189 -0.1380 7.5218 20 7 3.2651 1.1255 7.7895 21 14 4.1574 -1.2675 8.8656 22 1 5.4834 -1.8068 8.4705 23 1 4.2905 -0.5039 10.1322 24 1 3.2052 -2.3900 9.0625 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -0.2617 -2.1370 29 1 1.7517 -1.7715 -1.2056 30 1 3.8661 -2.4129 -0.2028 31 1 6.3193 -2.2499 -0.3129 32 1 7.3779 -0.3582 -1.4793 33 1 6.2612 1.4297 -3.6116 34 1 3.5163 1.2091 -2.4262 35 1 2.2490 -1.6317 1.1527 36 1 1.9759 -1.5505 3.8326 37 1 3.6480 -1.1213 3.3986 38 1 3.4092 1.4700 8.6848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427622210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:17 Heat of formation + Delta-G solvation = -95.594127 kcal Electronic energy + Delta-G solvation = -20705.914365 eV Core-core repulsion = 17445.076857 eV Total energy + Delta-G solvation = -3260.837508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07402 -40.37722 -38.12211 -36.65836 -34.58213 -33.54748 -31.93417 -30.72990 -29.94827 -27.65368 -27.46792 -23.57274 -23.32944 -22.06280 -21.49341 -19.84821 -19.00888 -17.86263 -17.36648 -17.29256 -16.87499 -16.58810 -16.40219 -16.08512 -15.83143 -15.09442 -14.79518 -14.68996 -14.46296 -14.30525 -13.73756 -13.45274 -13.20791 -13.17056 -13.12377 -12.86303 -12.79108 -12.58328 -12.48923 -12.36100 -11.91510 -11.73251 -11.35923 -11.12461 -10.88950 -10.26931 -10.12289 -9.74395 -9.50124 -8.66308 -8.33968 -6.12320 0.31576 0.38895 1.27723 1.44099 1.47553 1.57417 1.66876 2.27345 2.34060 2.69911 3.00044 3.27809 3.33581 3.74472 3.90506 3.96849 4.09617 4.20137 4.29368 4.30614 4.36946 4.47192 4.50678 4.55976 4.70871 4.79513 4.90864 5.02662 5.04297 5.16694 5.33692 5.41585 5.45345 5.48099 5.54740 5.67781 5.95512 6.19907 6.56546 6.86203 7.06961 7.31388 8.75129 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.003589 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.765830 B = 7800.061332 C = 8626.397466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.146 3.854 3 H 0.056 0.944 4 C -0.076 4.076 5 C -0.070 4.070 6 C -0.130 4.130 7 C -0.108 4.108 8 C -0.166 4.166 9 C 0.090 3.910 10 O -0.515 6.515 11 C -0.158 4.158 12 N -0.705 5.705 13 C 0.534 3.466 14 O -0.568 6.568 15 C -0.128 4.128 16 S -0.154 6.154 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.998 3.002 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.261 1.261 25 H 0.030 0.970 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.133 0.867 33 H 0.408 0.592 34 H 0.133 0.867 35 H 0.413 0.587 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 -10.574 -24.410 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.042 3.958 3 H 0.075 0.925 4 C -0.114 4.114 5 C -0.071 4.071 6 C -0.148 4.148 7 C -0.126 4.126 8 C -0.185 4.185 9 C 0.046 3.954 10 O -0.328 6.328 11 C -0.176 4.176 12 N -0.359 5.359 13 C 0.320 3.680 14 O -0.447 6.447 15 C -0.280 4.280 16 S 0.073 5.927 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.549 5.549 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.185 1.185 25 H 0.049 0.951 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.151 0.849 33 H 0.267 0.733 34 H 0.151 0.849 35 H 0.251 0.749 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.306 -8.220 -23.700 25.087 hybrid contribution 0.995 -1.785 0.525 2.110 sum 1.300 -10.005 -23.175 25.276 Atomic orbital electron populations 1.22146 0.94004 1.03308 1.02194 1.20992 0.94571 0.96481 0.83754 0.92547 1.20950 0.89812 1.03463 0.97133 1.19923 0.96565 0.94057 0.96510 1.21379 0.93720 0.99940 0.99726 1.21344 0.95531 0.97904 0.97836 1.21642 1.00927 0.94709 1.01173 1.18688 0.91045 0.87998 0.97660 1.84803 1.81759 1.37739 1.28477 1.21511 0.94197 0.99102 1.02836 1.45828 1.67375 1.14366 1.08300 1.20035 0.76661 0.86560 0.84763 1.90687 1.50852 1.17869 1.85243 1.23366 1.05331 1.03154 0.96111 1.85611 1.86753 1.17481 1.02883 1.23181 1.51058 0.98434 0.96826 0.89870 1.26137 0.95030 0.97190 1.00755 1.70185 1.46841 1.15541 1.22302 0.85006 0.79110 0.77759 0.76138 1.18640 1.20427 1.18515 0.95101 0.89526 0.90287 0.87184 0.87322 0.83680 0.83859 0.84888 0.73292 0.84933 0.74949 0.87163 0.87577 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.48 71.98 0.68 -2.35 16 2 C 0.15 3.12 2.56 44.99 0.12 3.24 16 3 H 0.06 1.62 7.58 -2.38 -0.02 1.60 16 4 C -0.08 -1.00 4.89 29.85 0.15 -0.86 16 5 C -0.07 -1.26 4.95 -19.88 -0.10 -1.36 16 6 C -0.13 -2.22 9.09 22.28 0.20 -2.02 16 7 C -0.11 -1.99 10.04 22.25 0.22 -1.77 16 8 C -0.17 -3.41 9.99 22.37 0.22 -3.19 16 9 C 0.09 1.97 6.71 22.51 0.15 2.12 16 10 O -0.51 -10.29 13.50 -92.47 -1.25 -11.54 16 11 C -0.16 -3.24 9.64 22.37 0.22 -3.02 16 12 N -0.70 -17.37 4.53 -442.52 -2.00 -19.37 16 13 C 0.53 20.03 7.81 87.66 0.68 20.71 16 14 O -0.57 -27.11 15.53 -3.05 -0.05 -27.16 16 15 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 16 S -0.15 -8.75 20.57 -56.49 -1.16 -9.91 16 17 C -0.55 -31.61 9.50 67.96 0.65 -30.96 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.78 5.49 84.86 0.47 1.25 16 20 N -0.91 -56.82 13.22 21.65 0.29 -56.53 16 21 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 25 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.11 1.04 8.09 -2.39 -0.02 1.02 16 29 H 0.11 0.88 8.09 -2.38 -0.02 0.86 16 30 H 0.15 1.71 7.57 -2.91 -0.02 1.69 16 31 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.41 3.60 9.06 -74.05 -0.67 2.93 16 34 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.41 7.14 7.82 -92.71 -0.73 6.42 16 36 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 37 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 38 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -83.14 343.74 1.63 -81.50 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -0.32 Total: 20.05 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 4.10 Total: -22.92 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -1.72 Total: -75.90 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -1.30 Total: -38.70 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.91 kcal Total: -83.14 1.63 -81.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427622210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.092 kcal (2) G-P(sol) polarization free energy of solvation -83.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds