Wall clock time and date at job start Tue Mar 31 2020 07:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76199 * 102.99987 * 2 1 4 4 C 1.38923 * 120.02434 * 180.02562 * 3 2 1 5 5 C 1.38088 * 119.97457 * 179.97438 * 4 3 2 6 6 C 1.38704 * 120.02559 * 0.02562 * 5 4 3 7 7 O 1.36004 * 119.97916 * 179.97438 * 6 5 4 8 8 C 1.42907 * 116.99620 * 354.53065 * 7 6 5 9 9 H 1.08994 * 109.46849 * 324.90793 * 8 7 6 10 10 C 1.53007 * 109.46854 * 84.90412 * 8 7 6 11 11 C 1.50698 * 109.46867 * 204.90350 * 8 7 6 12 12 O 1.21283 * 120.00410 * 355.00391 * 11 8 7 13 13 N 1.34785 * 119.99734 * 174.99859 * 11 8 7 14 14 C 1.46502 * 119.99878 * 179.97438 * 13 11 8 15 15 C 1.50695 * 109.46884 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00024 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00118 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99706 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00420 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46780 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47175 * 119.99592 * 19 17 15 22 22 H 1.48495 * 109.47144 * 240.00029 * 19 17 15 23 23 C 1.38718 * 120.05128 * 0.23449 * 6 5 4 24 24 C 1.38087 * 120.02014 * 359.48619 * 23 6 5 25 25 H 1.09001 * 109.46701 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46873 * 299.99548 * 1 2 3 27 27 H 1.08996 * 109.46992 * 60.00299 * 1 2 3 28 28 H 1.07999 * 120.01073 * 359.95405 * 4 3 2 29 29 H 1.08003 * 119.98560 * 179.97438 * 5 4 3 30 30 H 1.08993 * 109.46716 * 299.99889 * 10 8 7 31 31 H 1.08998 * 109.46691 * 60.00241 * 10 8 7 32 32 H 1.08997 * 109.46474 * 179.97438 * 10 8 7 33 33 H 0.96996 * 119.99404 * 0.02562 * 13 11 8 34 34 H 1.08998 * 109.46985 * 300.00053 * 14 13 11 35 35 H 1.09002 * 109.46763 * 60.00199 * 14 13 11 36 36 H 0.96995 * 119.99881 * 180.02562 * 18 17 15 37 37 H 1.07999 * 119.99049 * 179.74492 * 23 6 5 38 38 H 1.08000 * 120.01480 * 180.25300 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5387 2.1236 -0.0005 5 6 3.8482 3.4693 -0.0011 6 6 2.8334 4.4149 -0.0005 7 8 3.1392 5.7401 -0.0005 8 6 4.5203 6.0871 0.1203 9 1 5.0184 5.3724 0.7753 10 6 5.1766 6.0560 -1.2615 11 6 4.6411 7.4716 0.7028 12 8 3.6454 8.1348 0.9022 13 7 5.8559 7.9730 1.0024 14 6 5.9735 9.3192 1.5682 15 6 7.4265 9.6374 1.8095 16 1 8.1865 8.9099 1.5653 17 6 7.7859 10.8574 2.3419 18 7 6.8605 11.7436 2.6387 19 14 9.5872 11.2523 2.6403 20 1 10.4225 10.0970 2.2248 21 1 9.9691 12.4498 1.8493 22 1 9.8018 11.5237 4.0843 23 6 1.5066 4.0099 0.0055 24 6 1.1948 2.6647 0.0002 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 4.3290 1.3875 -0.0002 29 1 4.8808 3.7857 -0.0011 30 1 5.0891 5.0546 -1.6828 31 1 4.6784 6.7706 -1.9165 32 1 6.2298 6.3211 -1.1694 33 1 6.6522 7.4427 0.8426 34 1 5.5540 10.0443 0.8709 35 1 5.4295 9.3655 2.5116 36 1 7.1133 12.6020 3.0129 37 1 0.7172 4.7470 0.0100 38 1 0.1618 2.3496 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427639472.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:56 Heat of formation + Delta-G solvation = -54.112061 kcal Electronic energy + Delta-G solvation = -20452.433747 eV Core-core repulsion = 17193.395037 eV Total energy + Delta-G solvation = -3259.038711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.53128 -38.86837 -37.25706 -34.29053 -32.73560 -31.90584 -31.33035 -30.03668 -29.06346 -27.32190 -24.71548 -23.23145 -22.83540 -21.85341 -19.74595 -18.58768 -17.63940 -17.46658 -16.13696 -15.68918 -15.55531 -15.11862 -14.99920 -14.77803 -14.44714 -14.25237 -14.03357 -13.78437 -13.49728 -13.19408 -12.94444 -12.80177 -12.43365 -12.18169 -12.06336 -11.88355 -11.79098 -11.25430 -11.06210 -10.97621 -10.91969 -10.52815 -10.35932 -9.44195 -9.37081 -9.27039 -9.02476 -8.80314 -7.99866 -7.43552 -6.21450 -4.28962 1.03620 1.11349 1.26554 2.13224 2.86955 3.16024 3.20689 3.27997 3.30760 3.47205 4.05042 4.31347 4.56432 4.58403 4.68666 4.68948 4.74811 4.95804 5.00641 5.10824 5.14949 5.22140 5.24837 5.35664 5.51560 5.60234 5.73820 5.87192 6.00923 6.06083 6.13866 6.42799 7.18377 7.26151 7.35940 7.44362 7.59820 7.90268 8.48856 8.70029 8.95665 9.37568 10.88722 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.039147 B = 0.002475 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.083301 B =11310.502028 C =11625.074494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.128 6.128 3 C -0.129 4.129 4 C -0.056 4.056 5 C -0.195 4.195 6 C 0.137 3.863 7 O -0.281 6.281 8 C 0.064 3.936 9 H 0.095 0.905 10 C -0.174 4.174 11 C 0.503 3.497 12 O -0.532 6.532 13 N -0.706 5.706 14 C 0.251 3.749 15 C -0.544 4.544 16 H 0.064 0.936 17 C 0.063 3.937 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.133 4.133 24 C -0.091 4.091 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.130 0.870 29 H 0.138 0.862 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.391 0.609 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.266 0.734 37 H 0.137 0.863 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.248 -22.781 -7.157 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.112 5.888 3 C -0.241 4.241 4 C -0.079 4.079 5 C -0.215 4.215 6 C 0.089 3.911 7 O -0.193 6.193 8 C 0.003 3.997 9 H 0.112 0.888 10 C -0.232 4.232 11 C 0.286 3.714 12 O -0.409 6.409 13 N -0.356 5.356 14 C 0.130 3.870 15 C -0.582 4.582 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.521 5.521 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.153 4.153 24 C -0.115 4.115 25 H 0.125 0.875 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.148 0.852 29 H 0.155 0.845 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.224 0.776 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.154 0.846 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.481 -22.946 -6.936 25.427 hybrid contribution 0.694 1.095 0.159 1.306 sum -7.787 -21.851 -6.777 24.167 Atomic orbital electron populations 1.23648 0.94829 1.06983 1.05686 1.85376 1.06411 1.03476 1.93506 1.21484 0.96564 0.96259 1.09796 1.20518 0.94318 0.95223 0.97842 1.21294 0.99392 0.92933 1.07930 1.19140 0.93863 0.83091 0.95007 1.86282 1.26043 1.20060 1.86878 1.22386 0.81489 0.97034 0.98743 0.88779 1.22320 1.01736 1.03650 0.95487 1.19888 0.84869 0.86912 0.79758 1.90706 1.36658 1.60339 1.53194 1.46381 1.06098 1.20085 1.63013 1.19173 0.97279 0.76409 0.94103 1.21229 0.91416 1.01430 1.44167 0.91752 1.24963 0.98238 0.95861 0.94987 1.69985 1.32874 1.07127 1.42146 0.86340 0.83981 0.78439 0.78024 1.19615 1.20760 1.20764 1.20363 0.94235 0.95655 1.05039 1.20943 0.98299 0.91930 1.00299 0.87528 0.89732 0.89761 0.85215 0.84469 0.91094 0.90626 0.89914 0.77589 0.95289 0.95319 0.92416 0.84553 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.15 101.05 0.92 0.11 16 2 S -0.13 -1.14 22.56 -107.50 -2.43 -3.56 16 3 C -0.13 -1.36 6.11 -39.08 -0.24 -1.60 16 4 C -0.06 -0.59 9.79 -39.38 -0.39 -0.97 16 5 C -0.20 -2.21 8.23 -39.46 -0.32 -2.54 16 6 C 0.14 1.84 6.60 -39.23 -0.26 1.58 16 7 O -0.28 -4.54 9.34 -39.61 -0.37 -4.91 16 8 C 0.06 0.94 2.64 -27.88 -0.07 0.86 16 9 H 0.09 1.15 6.31 -51.93 -0.33 0.82 16 10 C -0.17 -2.05 9.12 37.16 0.34 -1.72 16 11 C 0.50 10.11 7.18 -10.98 -0.08 10.03 16 12 O -0.53 -13.27 16.51 -14.31 -0.24 -13.51 16 13 N -0.71 -14.39 5.51 -61.47 -0.34 -14.73 16 14 C 0.25 6.52 5.43 -5.20 -0.03 6.49 16 15 C -0.54 -14.42 9.28 -34.44 -0.32 -14.74 16 16 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.88 -25.74 13.29 55.43 0.74 -25.01 16 19 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.13 -1.60 9.98 -39.46 -0.39 -2.00 16 24 C -0.09 -0.94 9.36 -39.39 -0.37 -1.31 16 25 H 0.11 0.44 8.14 -51.92 -0.42 0.01 16 26 H 0.08 0.45 7.74 -51.92 -0.40 0.04 16 27 H 0.08 0.43 7.75 -51.93 -0.40 0.03 16 28 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.14 1.31 5.41 -52.48 -0.28 1.03 16 30 H 0.07 0.69 6.90 -51.93 -0.36 0.33 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 33 H 0.39 6.60 8.10 -40.82 -0.33 6.27 16 34 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.13 1.01 5.87 -52.49 -0.31 0.70 16 LS Contribution 336.97 15.07 5.08 5.08 Total: -1.00 -32.99 336.97 -8.78 -41.77 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.89 Total: 3.54 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -1.30 Total: -4.16 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.40 Total: -39.73 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.61 Total: -18.41 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.43 Total: -3.56 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.99 -8.78 -41.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427639472.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.344 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds