Wall clock time and date at job start Tue Mar 31 2020 07:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76199 * 102.99987 * 2 1 4 4 C 1.38923 * 120.02434 * 180.02562 * 3 2 1 5 5 C 1.38088 * 119.97457 * 179.97438 * 4 3 2 6 6 C 1.38704 * 120.02559 * 0.02562 * 5 4 3 7 7 O 1.36004 * 119.97916 * 179.97438 * 6 5 4 8 8 C 1.42907 * 116.99620 * 354.53065 * 7 6 5 9 9 H 1.08994 * 109.46849 * 324.90793 * 8 7 6 10 10 C 1.53007 * 109.46854 * 84.90412 * 8 7 6 11 11 C 1.50698 * 109.46867 * 204.90350 * 8 7 6 12 12 O 1.21283 * 120.00410 * 355.00391 * 11 8 7 13 13 N 1.34785 * 119.99734 * 174.99859 * 11 8 7 14 14 C 1.46502 * 119.99878 * 179.97438 * 13 11 8 15 15 C 1.50695 * 109.46884 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00024 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00118 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99706 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00420 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46780 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47175 * 119.99592 * 19 17 15 22 22 H 1.48495 * 109.47144 * 240.00029 * 19 17 15 23 23 C 1.38718 * 120.05128 * 0.23449 * 6 5 4 24 24 C 1.38087 * 120.02014 * 359.48619 * 23 6 5 25 25 H 1.09001 * 109.46701 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46873 * 299.99548 * 1 2 3 27 27 H 1.08996 * 109.46992 * 60.00299 * 1 2 3 28 28 H 1.07999 * 120.01073 * 359.95405 * 4 3 2 29 29 H 1.08003 * 119.98560 * 179.97438 * 5 4 3 30 30 H 1.08993 * 109.46716 * 299.99889 * 10 8 7 31 31 H 1.08998 * 109.46691 * 60.00241 * 10 8 7 32 32 H 1.08997 * 109.46474 * 179.97438 * 10 8 7 33 33 H 0.96996 * 119.99404 * 0.02562 * 13 11 8 34 34 H 1.08998 * 109.46985 * 300.00053 * 14 13 11 35 35 H 1.09002 * 109.46763 * 60.00199 * 14 13 11 36 36 H 0.96995 * 119.99881 * 180.02562 * 18 17 15 37 37 H 1.07999 * 119.99049 * 179.74492 * 23 6 5 38 38 H 1.08000 * 120.01480 * 180.25300 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5387 2.1236 -0.0005 5 6 3.8482 3.4693 -0.0011 6 6 2.8334 4.4149 -0.0005 7 8 3.1392 5.7401 -0.0005 8 6 4.5203 6.0871 0.1203 9 1 5.0184 5.3724 0.7753 10 6 5.1766 6.0560 -1.2615 11 6 4.6411 7.4716 0.7028 12 8 3.6454 8.1348 0.9022 13 7 5.8559 7.9730 1.0024 14 6 5.9735 9.3192 1.5682 15 6 7.4265 9.6374 1.8095 16 1 8.1865 8.9099 1.5653 17 6 7.7859 10.8574 2.3419 18 7 6.8605 11.7436 2.6387 19 14 9.5872 11.2523 2.6403 20 1 10.4225 10.0970 2.2248 21 1 9.9691 12.4498 1.8493 22 1 9.8018 11.5237 4.0843 23 6 1.5066 4.0099 0.0055 24 6 1.1948 2.6647 0.0002 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 4.3290 1.3875 -0.0002 29 1 4.8808 3.7857 -0.0011 30 1 5.0891 5.0546 -1.6828 31 1 4.6784 6.7706 -1.9165 32 1 6.2298 6.3211 -1.1694 33 1 6.6522 7.4427 0.8426 34 1 5.5540 10.0443 0.8709 35 1 5.4295 9.3655 2.5116 36 1 7.1133 12.6020 3.0129 37 1 0.7172 4.7470 0.0100 38 1 0.1618 2.3496 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427639472.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:56 Heat of formation + Delta-G solvation = -75.176286 kcal Electronic energy + Delta-G solvation = -20453.347161 eV Core-core repulsion = 17193.395037 eV Total energy + Delta-G solvation = -3259.952124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.65693 -40.29989 -38.36404 -36.22007 -34.55067 -33.17400 -32.17813 -30.94429 -29.59536 -29.25717 -26.02538 -24.68423 -23.83189 -23.14759 -21.36453 -19.54053 -19.18264 -18.38672 -17.82708 -17.06079 -16.84675 -16.69666 -15.98425 -15.77396 -15.71387 -15.65181 -14.83231 -14.66871 -14.55385 -14.40798 -14.14283 -14.02845 -13.59454 -13.57736 -13.34381 -12.98740 -12.91308 -12.76743 -12.75688 -12.26883 -12.21817 -11.93749 -11.47164 -11.19812 -10.83659 -10.82031 -10.10695 -10.10491 -9.93470 -8.30054 -8.19165 -6.46837 0.18510 0.26405 0.62189 1.43902 1.45192 1.50462 1.55686 1.58201 1.68108 2.36713 2.61176 2.71578 3.05381 3.55748 3.73367 3.80128 3.84609 3.90028 4.18098 4.28979 4.30651 4.32519 4.48740 4.61954 4.65840 4.87847 4.93529 5.00623 5.07783 5.10579 5.20123 5.21820 5.26982 5.41760 5.56962 5.64224 5.81416 6.30862 6.62732 6.78911 7.20510 7.36636 8.82461 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.039147 B = 0.002475 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.083301 B =11310.502028 C =11625.074494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.143 6.143 3 C -0.133 4.133 4 C -0.062 4.062 5 C -0.192 4.192 6 C 0.108 3.892 7 O -0.313 6.313 8 C 0.076 3.924 9 H 0.126 0.874 10 C -0.168 4.168 11 C 0.498 3.502 12 O -0.590 6.590 13 N -0.695 5.695 14 C 0.266 3.734 15 C -0.553 4.553 16 H 0.089 0.911 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.986 3.014 20 H -0.250 1.250 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.147 4.147 24 C -0.091 4.091 25 H 0.125 0.875 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.149 0.851 29 H 0.156 0.844 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.412 0.588 34 H -0.010 1.010 35 H -0.012 1.012 36 H 0.269 0.731 37 H 0.133 0.867 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.559 -25.691 -7.775 27.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.097 5.903 3 C -0.245 4.245 4 C -0.085 4.085 5 C -0.212 4.212 6 C 0.061 3.939 7 O -0.226 6.226 8 C 0.016 3.984 9 H 0.144 0.856 10 C -0.225 4.225 11 C 0.284 3.716 12 O -0.470 6.470 13 N -0.346 5.346 14 C 0.144 3.856 15 C -0.591 4.591 16 H 0.107 0.893 17 C -0.198 4.198 18 N -0.570 5.570 19 Si 0.809 3.191 20 H -0.173 1.173 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.167 4.167 24 C -0.114 4.114 25 H 0.144 0.856 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.167 0.833 29 H 0.174 0.826 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.249 0.751 34 H 0.008 0.992 35 H 0.006 0.994 36 H 0.077 0.923 37 H 0.151 0.849 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.771 -25.929 -7.578 27.850 hybrid contribution 0.003 1.874 0.349 1.906 sum -6.768 -24.056 -7.229 26.014 Atomic orbital electron populations 1.23779 0.91996 1.08502 1.06443 1.85447 1.09614 1.02039 1.93182 1.21776 0.96800 0.97362 1.08548 1.20815 0.95001 0.95311 0.97339 1.21465 0.99735 0.92845 1.07111 1.19374 0.94943 0.82266 0.97297 1.86225 1.26556 1.22068 1.87781 1.22299 0.82065 0.93337 1.00660 0.85630 1.22339 1.02130 1.04929 0.93120 1.20931 0.83552 0.88833 0.78275 1.90673 1.38487 1.62521 1.55337 1.46038 1.07570 1.18391 1.62644 1.18615 0.96995 0.78545 0.91489 1.21630 0.91635 1.02093 1.43735 0.89330 1.26094 1.03542 0.95667 0.94458 1.70151 1.35779 1.07811 1.43283 0.85085 0.77572 0.78697 0.77700 1.17333 1.20577 1.20626 1.20544 0.94055 0.96584 1.05554 1.21176 0.99594 0.91057 0.99563 0.85644 0.89089 0.88887 0.83324 0.82615 0.88293 0.92344 0.88002 0.75094 0.99225 0.99357 0.92252 0.84883 0.83042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.15 113.37 1.04 -0.15 16 2 S -0.14 -2.21 22.56 -56.49 -1.27 -3.49 16 3 C -0.13 -2.53 6.11 22.60 0.14 -2.39 16 4 C -0.06 -1.16 9.79 22.40 0.22 -0.94 16 5 C -0.19 -3.94 8.23 22.35 0.18 -3.75 16 6 C 0.11 2.84 6.60 22.50 0.15 2.99 16 7 O -0.31 -10.19 9.34 -74.61 -0.70 -10.89 16 8 C 0.08 2.17 2.64 29.85 0.08 2.25 16 9 H 0.13 2.77 6.31 -2.39 -0.02 2.76 16 10 C -0.17 -3.62 9.12 71.98 0.66 -2.96 16 11 C 0.50 20.51 7.18 87.65 0.63 21.14 16 12 O -0.59 -31.12 16.51 15.95 0.26 -30.86 16 13 N -0.70 -28.65 5.51 -466.78 -2.57 -31.22 16 14 C 0.27 14.45 5.43 85.63 0.46 14.92 16 15 C -0.55 -29.37 9.28 25.60 0.24 -29.13 16 16 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 17 C 0.00 0.11 5.46 84.65 0.46 0.57 16 18 N -0.93 -55.88 13.29 21.45 0.28 -55.59 16 19 Si 0.99 41.58 29.54 68.60 2.03 43.61 16 20 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 21 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 22 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 23 C -0.15 -3.52 9.98 22.35 0.22 -3.30 16 24 C -0.09 -1.73 9.36 22.40 0.21 -1.52 16 25 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.09 0.70 7.74 -2.39 -0.02 0.68 16 27 H 0.09 0.67 7.75 -2.39 -0.02 0.65 16 28 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 29 H 0.16 2.46 5.41 -2.91 -0.02 2.45 16 30 H 0.10 1.62 6.90 -2.39 -0.02 1.60 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.10 1.79 7.92 -2.39 -0.02 1.77 16 33 H 0.41 13.31 8.10 -92.71 -0.75 12.56 16 34 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 35 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 36 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 38 H 0.15 2.06 5.87 -2.91 -0.02 2.04 16 Total: -1.00 -75.77 336.97 3.05 -72.72 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.33 Total: 18.00 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 4.69 Total: -2.28 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -2.29 Total: -86.81 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.43 Total: -41.75 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 16 Polarization: -2.21 SS G_CDS: -1.27 Total: -3.49 kcal Total: -75.77 3.05 -72.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427639472.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.453 kcal (2) G-P(sol) polarization free energy of solvation -75.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds