Wall clock time and date at job start Tue Mar 31 2020 07:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76196 * 103.00184 * 2 1 4 4 C 1.38929 * 120.02374 * 179.97438 * 3 2 1 5 5 C 1.38089 * 119.97198 * 180.29864 * 4 3 2 6 6 C 1.38714 * 120.02619 * 359.46280 * 5 4 3 7 7 O 1.35997 * 119.97387 * 180.25796 * 6 5 4 8 8 C 1.42903 * 116.99758 * 185.71866 * 7 6 5 9 9 H 1.08994 * 109.47693 * 35.08017 * 8 7 6 10 10 C 1.53004 * 109.46755 * 275.07706 * 8 7 6 11 11 C 1.50703 * 109.46973 * 155.08434 * 8 7 6 12 12 O 1.21275 * 120.00284 * 4.99121 * 11 8 7 13 13 N 1.34782 * 119.99795 * 184.99751 * 11 8 7 14 14 C 1.46497 * 120.00120 * 179.97438 * 13 11 8 15 15 C 1.50697 * 109.47328 * 180.02562 * 14 13 11 16 16 H 1.07996 * 119.99577 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00067 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99723 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99890 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46684 * 90.00025 * 19 17 15 21 21 H 1.48497 * 109.47219 * 209.99566 * 19 17 15 22 22 H 1.48495 * 109.47360 * 330.00320 * 19 17 15 23 23 C 1.38713 * 120.04918 * 0.51546 * 6 5 4 24 24 C 1.38093 * 120.02500 * 359.76507 * 23 6 5 25 25 H 1.09001 * 109.46627 * 300.00581 * 1 2 3 26 26 H 1.08999 * 109.46607 * 59.99933 * 1 2 3 27 27 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00845 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.98084 * 179.70116 * 5 4 3 30 30 H 1.08996 * 109.47360 * 300.00022 * 10 8 7 31 31 H 1.08996 * 109.47184 * 60.00230 * 10 8 7 32 32 H 1.09007 * 109.46966 * 179.97438 * 10 8 7 33 33 H 0.96996 * 119.99689 * 0.02562 * 13 11 8 34 34 H 1.09004 * 109.47390 * 300.00434 * 14 13 11 35 35 H 1.09008 * 109.46615 * 60.00024 * 14 13 11 36 36 H 0.97005 * 119.99918 * 180.02562 * 18 17 15 37 37 H 1.07998 * 119.98802 * 179.73764 * 23 6 5 38 38 H 1.08000 * 120.01369 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5389 2.1235 0.0005 5 6 3.8483 3.4692 0.0068 6 6 2.8335 4.4149 0.0012 7 8 3.1395 5.7400 0.0021 8 6 2.0504 6.6572 0.1231 9 1 1.2889 6.2330 0.7774 10 6 1.4476 6.9181 -1.2588 11 6 2.5485 7.9542 0.7068 12 8 3.7340 8.1135 0.9069 13 7 1.6764 8.9372 1.0066 14 6 2.1605 10.1978 1.5746 15 6 0.9938 11.1204 1.8169 16 1 -0.0079 10.7999 1.5718 17 6 1.2055 12.3741 2.3504 18 7 2.4255 12.7645 2.6482 19 14 -0.2406 13.5179 2.6500 20 1 -0.7710 13.2969 4.0194 21 1 0.2067 14.9274 2.5140 22 1 -1.3070 13.2388 1.6551 23 6 1.5068 4.0100 0.0002 24 6 1.1949 2.6647 -0.0002 25 1 -0.3632 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 4.3291 1.3874 0.0005 29 1 4.8809 3.7855 0.0121 30 1 2.2090 7.3425 -1.9131 31 1 1.0874 5.9801 -1.6811 32 1 0.6165 7.6174 -1.1665 33 1 0.7282 8.8095 0.8470 34 1 2.6687 9.9998 2.5183 35 1 2.8563 10.6664 0.8785 36 1 2.5744 13.6463 3.0239 37 1 0.7174 4.7470 0.0002 38 1 0.1619 2.3496 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427639473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:58 Heat of formation + Delta-G solvation = -75.093604 kcal Electronic energy + Delta-G solvation = -20496.148367 eV Core-core repulsion = 17236.199829 eV Total energy + Delta-G solvation = -3259.948539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66065 -40.30206 -38.36208 -36.22264 -34.55460 -33.23133 -32.05786 -31.02600 -29.58584 -29.24297 -26.02505 -24.68323 -23.81659 -23.16165 -21.37543 -19.54825 -19.19426 -18.38206 -17.79641 -17.04858 -16.83021 -16.68419 -16.10295 -15.78527 -15.76898 -15.53368 -14.83860 -14.73675 -14.62180 -14.20475 -14.14475 -14.01467 -13.65966 -13.53817 -13.32968 -12.99239 -12.94151 -12.81144 -12.72462 -12.26333 -12.22651 -11.92148 -11.50468 -11.18584 -10.82540 -10.82150 -10.14790 -10.06142 -9.93577 -8.29895 -8.19327 -6.46894 0.19689 0.25251 0.61961 1.43710 1.46351 1.52104 1.55614 1.57209 1.67760 2.36740 2.61222 2.71388 3.05474 3.54796 3.72852 3.77945 3.84822 3.90712 4.19351 4.29527 4.30858 4.35078 4.50245 4.61799 4.65354 4.87094 4.93775 4.99296 5.07623 5.10533 5.20002 5.21535 5.26116 5.41430 5.57906 5.64443 5.81268 6.31044 6.62394 6.78804 7.20462 7.36654 8.82416 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.032079 B = 0.002571 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.630208 B =10889.828435 C =11396.462531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.148 6.148 3 C -0.132 4.132 4 C -0.063 4.063 5 C -0.147 4.147 6 C 0.108 3.892 7 O -0.313 6.313 8 C 0.076 3.924 9 H 0.127 0.873 10 C -0.168 4.168 11 C 0.498 3.502 12 O -0.590 6.590 13 N -0.695 5.695 14 C 0.266 3.734 15 C -0.554 4.554 16 H 0.089 0.911 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.986 3.014 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.253 1.253 23 C -0.192 4.192 24 C -0.089 4.089 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.147 0.853 29 H 0.134 0.866 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.412 0.588 34 H -0.012 1.012 35 H -0.010 1.010 36 H 0.269 0.731 37 H 0.156 0.844 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.814 -24.907 -7.803 27.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.092 5.908 3 C -0.244 4.244 4 C -0.086 4.086 5 C -0.168 4.168 6 C 0.061 3.939 7 O -0.227 6.227 8 C 0.017 3.983 9 H 0.144 0.856 10 C -0.225 4.225 11 C 0.284 3.716 12 O -0.470 6.470 13 N -0.346 5.346 14 C 0.144 3.856 15 C -0.592 4.592 16 H 0.107 0.893 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.809 3.191 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.176 1.176 23 C -0.211 4.211 24 C -0.112 4.112 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.143 0.857 28 H 0.164 0.836 29 H 0.152 0.848 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.249 0.751 34 H 0.006 0.994 35 H 0.008 0.992 36 H 0.078 0.922 37 H 0.174 0.826 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.053 -25.596 -7.610 27.891 hybrid contribution -1.052 2.103 0.359 2.378 sum -9.104 -23.494 -7.251 26.219 Atomic orbital electron populations 1.23782 0.91672 1.08513 1.06571 1.85505 1.09915 1.02169 1.93186 1.21764 0.96618 0.97500 1.08523 1.20729 0.95332 0.94539 0.98033 1.20554 0.99112 0.91487 1.05608 1.19368 0.94609 0.82597 0.97295 1.86228 1.35036 1.13624 1.87774 1.22297 0.88821 0.86567 1.00643 0.85607 1.22339 1.01924 1.05128 0.93112 1.20942 0.86301 0.86100 0.78301 1.90674 1.18821 1.82196 1.55316 1.46031 1.10782 1.15206 1.62609 1.18613 0.95234 0.80343 0.91453 1.21597 0.93897 0.99880 1.43824 0.89314 1.26092 0.99244 0.99931 0.94446 1.70146 1.22882 1.20863 1.43131 0.85134 0.78097 0.76752 0.79105 1.19653 1.21181 1.17606 1.21454 0.94898 0.97739 1.07058 1.21258 0.99495 0.91593 0.98902 0.88930 0.88692 0.85745 0.83556 0.84823 0.92380 0.88278 0.87979 0.75095 0.99394 0.99242 0.92248 0.82647 0.82818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.15 113.37 1.04 -0.02 16 2 S -0.15 -2.30 22.56 -56.49 -1.27 -3.57 16 3 C -0.13 -2.52 6.11 22.60 0.14 -2.38 16 4 C -0.06 -1.32 9.79 22.40 0.22 -1.10 16 5 C -0.15 -3.65 9.98 22.35 0.22 -3.42 16 6 C 0.11 2.85 6.60 22.50 0.15 3.00 16 7 O -0.31 -10.21 9.34 -74.53 -0.70 -10.90 16 8 C 0.08 2.16 2.64 29.85 0.08 2.24 16 9 H 0.13 2.71 6.31 -2.39 -0.02 2.70 16 10 C -0.17 -3.55 9.12 71.98 0.66 -2.89 16 11 C 0.50 20.42 7.18 87.66 0.63 21.05 16 12 O -0.59 -31.14 16.51 15.98 0.26 -30.87 16 13 N -0.69 -28.48 5.51 -466.78 -2.57 -31.06 16 14 C 0.27 14.42 5.43 85.63 0.46 14.89 16 15 C -0.55 -29.31 9.28 25.60 0.24 -29.07 16 16 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 17 C 0.00 0.14 5.46 84.66 0.46 0.60 16 18 N -0.93 -55.82 13.29 21.45 0.28 -55.53 16 19 Si 0.99 41.36 29.54 68.60 2.03 43.38 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 23 C -0.19 -3.78 8.23 22.35 0.18 -3.60 16 24 C -0.09 -1.52 9.36 22.40 0.21 -1.31 16 25 H 0.09 0.61 7.75 -2.39 -0.02 0.59 16 26 H 0.09 0.57 7.74 -2.39 -0.02 0.55 16 27 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 29 H 0.13 3.27 8.06 -2.91 -0.02 3.24 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.10 1.56 6.90 -2.39 -0.02 1.54 16 32 H 0.10 1.75 7.93 -2.38 -0.02 1.73 16 33 H 0.41 13.16 8.10 -92.71 -0.75 12.41 16 34 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 35 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 36 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 37 H 0.16 2.30 5.41 -2.91 -0.02 2.28 16 38 H 0.15 1.67 5.87 -2.91 -0.02 1.65 16 Total: -1.00 -76.06 336.98 3.05 -73.01 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.33 Total: 17.58 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 4.69 Total: -2.04 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -2.29 Total: -86.59 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -0.43 Total: -41.77 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -1.27 Total: -3.57 kcal Total: -76.06 3.05 -73.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427639473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.082 kcal (2) G-P(sol) polarization free energy of solvation -76.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds