Wall clock time and date at job start Tue Mar 31 2020 07:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47573 * 2 1 4 4 C 1.50697 * 109.46755 * 119.99830 * 2 1 3 5 5 H 1.08004 * 120.00107 * 119.99550 * 4 2 1 6 6 C 1.37882 * 120.00160 * 299.99761 * 4 2 1 7 7 N 1.31513 * 120.00019 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00008 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46973 * 90.00182 * 8 6 4 10 10 H 1.48498 * 109.47295 * 209.99866 * 8 6 4 11 11 H 1.48505 * 109.47463 * 330.00411 * 8 6 4 12 12 N 1.46496 * 109.47139 * 239.99765 * 2 1 3 13 13 C 1.34772 * 120.00214 * 85.00355 * 12 2 1 14 14 O 1.21281 * 119.99940 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00069 * 180.02562 * 13 12 2 16 16 C 1.50706 * 109.47001 * 179.97438 * 15 13 12 17 17 C 1.38233 * 120.00109 * 269.72485 * 16 15 13 18 18 C 1.38239 * 119.99759 * 179.74218 * 17 16 15 19 19 C 1.38234 * 119.99986 * 0.53603 * 18 17 16 20 20 S 1.76199 * 120.00318 * 179.76835 * 19 18 17 21 21 C 1.81398 * 102.99610 * 269.97746 * 20 19 18 22 22 O 1.42106 * 102.99896 * 23.82375 * 20 19 18 23 23 C 1.38238 * 120.00067 * 359.73675 * 19 18 17 24 24 C 1.38235 * 120.00108 * 359.97438 * 23 19 18 25 25 H 1.09002 * 109.46974 * 59.99692 * 1 2 3 26 26 H 1.08995 * 109.47573 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47317 * 300.00357 * 1 2 3 28 28 H 0.96996 * 120.00146 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99972 * 265.00356 * 12 2 1 30 30 H 1.09000 * 109.46978 * 60.00374 * 15 13 12 31 31 H 1.09000 * 109.46976 * 299.99619 * 15 13 12 32 32 H 1.08004 * 119.99934 * 0.02562 * 17 16 15 33 33 H 1.08000 * 119.99962 * 180.29747 * 18 17 16 34 34 H 1.08995 * 109.47774 * 59.99369 * 21 20 19 35 35 H 1.09006 * 109.46978 * 179.97438 * 21 20 19 36 36 H 1.09002 * 109.46942 * 299.98993 * 21 20 19 37 37 H 1.08000 * 120.00559 * 180.02562 * 23 19 18 38 38 H 1.07999 * 120.00165 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3211 -1.1203 4.0080 9 1 3.6295 -0.5458 4.4125 10 1 1.3429 -0.9491 5.1121 11 1 2.4856 -2.5662 3.7121 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8583 1.1583 -2.4117 15 6 2.6489 -0.7290 -3.5876 16 6 2.6992 0.2392 -4.7414 17 6 1.5997 0.3900 -5.5656 18 6 1.6441 1.2821 -6.6208 19 6 2.7917 2.0151 -6.8583 20 16 2.8504 3.1477 -8.2068 21 6 3.4676 2.1249 -9.5719 22 8 1.4804 3.4542 -8.4266 23 6 3.8932 1.8602 -6.0375 24 6 3.8468 0.9725 -4.9788 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7089 1.1616 3.4844 29 1 2.2489 -1.6318 -1.1525 30 1 1.9759 -1.5507 -3.8325 31 1 3.6480 -1.1216 -3.3985 32 1 0.7045 -0.1858 -5.3825 33 1 0.7834 1.4034 -7.2618 34 1 2.7782 1.2992 -9.7479 35 1 3.5453 2.7316 -10.4742 36 1 4.4501 1.7293 -9.3141 37 1 4.7897 2.4332 -6.2227 38 1 4.7075 0.8512 -4.3377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435464303.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:45 Heat of formation + Delta-G solvation = -57.265632 kcal Electronic energy + Delta-G solvation = -20627.342478 eV Core-core repulsion = 17368.167018 eV Total energy + Delta-G solvation = -3259.175460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.66966 -38.34529 -35.86410 -34.84033 -32.86892 -32.32794 -30.96257 -29.36324 -28.99784 -27.17251 -25.26744 -22.79243 -22.36944 -20.79887 -19.41598 -18.22458 -17.20662 -16.69551 -15.83494 -15.68784 -15.42752 -15.00981 -14.95473 -14.34424 -14.16486 -13.94425 -13.75495 -13.39684 -13.16297 -12.91817 -12.46172 -12.40657 -12.19040 -11.99110 -11.64650 -11.59058 -11.09119 -11.07561 -10.97333 -10.73151 -10.35352 -10.31700 -10.25417 -9.30099 -9.07704 -8.92271 -8.87383 -8.56840 -8.48484 -7.93453 -6.14055 -4.23754 0.85675 1.41610 1.75270 2.54491 3.22744 3.29294 3.30994 3.36188 3.53980 3.79751 4.18396 4.40321 4.73846 4.77460 4.91370 4.95551 5.00406 5.18006 5.30820 5.36329 5.55085 5.57587 5.61493 5.68616 5.87597 6.02876 6.22436 6.26838 6.57819 6.80746 6.93914 6.95344 7.13770 7.44117 7.54025 7.67412 7.89568 8.13342 8.63913 8.76033 9.10561 9.43965 10.91932 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.040356 B = 0.002711 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.661594 B =10327.452124 C =10480.265284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.710 5.710 13 C 0.502 3.498 14 O -0.546 6.546 15 C -0.115 4.115 16 C -0.014 4.014 17 C -0.122 4.122 18 C -0.052 4.052 19 C -0.468 4.468 20 S 1.332 4.668 21 C -0.500 4.500 22 O -0.860 6.860 23 C -0.044 4.044 24 C -0.124 4.124 25 H 0.014 0.986 26 H 0.026 0.974 27 H 0.090 0.910 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.135 0.865 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.605 -0.414 -20.177 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.358 5.358 13 C 0.286 3.714 14 O -0.425 6.425 15 C -0.155 4.155 16 C -0.015 4.015 17 C -0.141 4.141 18 C -0.071 4.071 19 C -0.565 4.565 20 S 1.529 4.471 21 C -0.656 4.656 22 O -0.855 6.855 23 C -0.063 4.063 24 C -0.143 4.143 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.221 0.779 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.153 0.847 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.029 1.518 -20.070 22.059 hybrid contribution -0.993 -2.923 0.704 3.166 sum 8.035 -1.405 -19.366 21.014 Atomic orbital electron populations 1.22078 0.98532 0.99062 1.00912 1.18732 0.90988 0.93980 0.79990 0.93404 1.21215 1.32506 1.13236 0.90333 0.92081 1.24902 0.94798 0.94970 0.99095 1.69903 1.35775 1.22448 1.23920 0.86440 0.78612 0.79802 0.82180 1.20536 1.21056 1.19863 1.46531 1.65221 1.13535 1.10505 1.20196 0.79124 0.87616 0.84427 1.90697 1.50775 1.15983 1.85009 1.20870 1.04047 0.98063 0.92506 1.19587 0.93611 0.94947 0.93351 1.21081 0.98006 0.99573 0.95484 1.20997 0.96594 0.92907 0.96610 1.27458 0.99195 1.14390 1.15448 1.69398 1.00333 0.93217 0.84163 1.27789 1.09242 1.12698 1.15862 1.93108 1.33789 1.75233 1.83405 1.20741 0.96471 0.95787 0.93285 1.21119 0.98218 0.96977 0.97972 0.96713 0.95502 0.89140 0.92538 0.77920 0.88344 0.88092 0.85987 0.85861 0.90164 0.87887 0.87166 0.84733 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.75 2.56 -69.09 -0.18 6.57 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.09 8.73 -34.44 -0.30 -14.39 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.97 11.32 55.43 0.63 -24.35 16 8 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.71 -14.50 5.07 -54.94 -0.28 -14.78 16 13 C 0.50 9.79 7.79 -10.99 -0.09 9.71 16 14 O -0.55 -13.17 15.70 5.56 0.09 -13.08 16 15 C -0.11 -1.56 5.83 -29.03 -0.17 -1.73 16 16 C -0.01 -0.20 4.37 -104.62 -0.46 -0.66 16 17 C -0.12 -1.78 9.70 -39.58 -0.38 -2.17 16 18 C -0.05 -0.74 9.44 -39.58 -0.37 -1.12 16 19 C -0.47 -5.44 5.61 -39.58 -0.22 -5.66 16 20 S 1.33 11.21 14.19 -107.50 -1.53 9.69 16 21 C -0.50 -3.30 10.70 101.05 1.08 -2.22 16 22 O -0.86 -13.22 16.90 -35.23 -0.60 -13.82 16 23 C -0.04 -0.45 9.75 -39.58 -0.39 -0.83 16 24 C -0.12 -1.55 9.70 -39.58 -0.38 -1.93 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.39 6.71 8.54 -40.82 -0.35 6.36 16 30 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 31 H 0.10 1.10 8.09 -51.93 -0.42 0.68 16 32 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.12 1.80 7.45 -52.49 -0.39 1.41 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.55 8.14 -51.92 -0.42 0.12 16 36 H 0.11 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 339.53 15.07 5.12 5.12 Total: -1.00 -37.82 339.53 -8.41 -46.23 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.21 Total: 5.62 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.61 Total: -16.14 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.35 Total: -39.12 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.51 Total: -26.89 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 11.21 SS G_CDS: -1.53 Total: 9.69 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.82 -8.41 -46.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435464303.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.032 kcal (2) G-P(sol) polarization free energy of solvation -37.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds