Wall clock time and date at job start Tue Mar 31 2020 07:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47573 * 2 1 4 4 C 1.50697 * 109.46755 * 119.99830 * 2 1 3 5 5 H 1.08004 * 120.00107 * 119.99550 * 4 2 1 6 6 C 1.37882 * 120.00160 * 299.99761 * 4 2 1 7 7 N 1.31513 * 120.00019 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00008 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46973 * 90.00182 * 8 6 4 10 10 H 1.48498 * 109.47295 * 209.99866 * 8 6 4 11 11 H 1.48505 * 109.47463 * 330.00411 * 8 6 4 12 12 N 1.46496 * 109.47139 * 239.99765 * 2 1 3 13 13 C 1.34772 * 120.00214 * 85.00355 * 12 2 1 14 14 O 1.21281 * 119.99940 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00069 * 180.02562 * 13 12 2 16 16 C 1.50706 * 109.47001 * 179.97438 * 15 13 12 17 17 C 1.38233 * 120.00109 * 269.72485 * 16 15 13 18 18 C 1.38239 * 119.99759 * 179.74218 * 17 16 15 19 19 C 1.38234 * 119.99986 * 0.53603 * 18 17 16 20 20 S 1.76199 * 120.00318 * 179.76835 * 19 18 17 21 21 C 1.81398 * 102.99610 * 269.97746 * 20 19 18 22 22 O 1.42106 * 102.99896 * 23.82375 * 20 19 18 23 23 C 1.38238 * 120.00067 * 359.73675 * 19 18 17 24 24 C 1.38235 * 120.00108 * 359.97438 * 23 19 18 25 25 H 1.09002 * 109.46974 * 59.99692 * 1 2 3 26 26 H 1.08995 * 109.47573 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47317 * 300.00357 * 1 2 3 28 28 H 0.96996 * 120.00146 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99972 * 265.00356 * 12 2 1 30 30 H 1.09000 * 109.46978 * 60.00374 * 15 13 12 31 31 H 1.09000 * 109.46976 * 299.99619 * 15 13 12 32 32 H 1.08004 * 119.99934 * 0.02562 * 17 16 15 33 33 H 1.08000 * 119.99962 * 180.29747 * 18 17 16 34 34 H 1.08995 * 109.47774 * 59.99369 * 21 20 19 35 35 H 1.09006 * 109.46978 * 179.97438 * 21 20 19 36 36 H 1.09002 * 109.46942 * 299.98993 * 21 20 19 37 37 H 1.08000 * 120.00559 * 180.02562 * 23 19 18 38 38 H 1.07999 * 120.00165 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3211 -1.1203 4.0080 9 1 3.6295 -0.5458 4.4125 10 1 1.3429 -0.9491 5.1121 11 1 2.4856 -2.5662 3.7121 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8583 1.1583 -2.4117 15 6 2.6489 -0.7290 -3.5876 16 6 2.6992 0.2392 -4.7414 17 6 1.5997 0.3900 -5.5656 18 6 1.6441 1.2821 -6.6208 19 6 2.7917 2.0151 -6.8583 20 16 2.8504 3.1477 -8.2068 21 6 3.4676 2.1249 -9.5719 22 8 1.4804 3.4542 -8.4266 23 6 3.8932 1.8602 -6.0375 24 6 3.8468 0.9725 -4.9788 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7089 1.1616 3.4844 29 1 2.2489 -1.6318 -1.1525 30 1 1.9759 -1.5507 -3.8325 31 1 3.6480 -1.1216 -3.3985 32 1 0.7045 -0.1858 -5.3825 33 1 0.7834 1.4034 -7.2618 34 1 2.7782 1.2992 -9.7479 35 1 3.5453 2.7316 -10.4742 36 1 4.4501 1.7293 -9.3141 37 1 4.7897 2.4332 -6.2227 38 1 4.7075 0.8512 -4.3377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435464303.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:44 Heat of formation + Delta-G solvation = -85.378628 kcal Electronic energy + Delta-G solvation = -20628.561549 eV Core-core repulsion = 17368.167018 eV Total energy + Delta-G solvation = -3260.394531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95747 -39.66797 -36.88042 -36.72149 -34.36812 -33.87383 -31.91305 -31.08784 -29.65376 -28.41165 -27.34858 -23.76534 -23.74802 -22.32798 -21.10818 -19.11210 -18.88905 -17.64642 -17.48402 -17.14961 -16.74924 -16.30915 -15.82208 -15.77422 -15.56369 -15.00278 -14.79469 -14.56327 -14.38265 -14.29652 -13.80661 -13.59771 -13.42815 -13.18533 -13.03158 -12.93773 -12.83463 -12.68212 -12.49334 -12.28370 -12.12896 -12.01123 -11.27662 -11.12744 -10.83606 -10.59774 -9.99563 -9.89076 -9.75437 -9.31630 -8.18223 -6.36263 -0.06583 0.44042 0.98678 1.45087 1.45642 1.56499 1.80873 1.82864 2.34117 2.51534 2.87075 3.04123 3.12419 3.66189 3.81917 4.06040 4.18182 4.29967 4.35524 4.45962 4.53985 4.57712 4.70142 4.72293 4.87497 4.91125 5.07418 5.07937 5.18807 5.27824 5.29027 5.42245 5.58245 5.60629 5.67028 5.89444 6.01196 6.08431 6.72435 6.97248 7.32068 7.57844 8.88248 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.040356 B = 0.002711 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.661594 B =10327.452124 C =10480.265284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.271 3.729 3 H -0.003 1.003 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.974 3.026 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.258 1.258 12 N -0.706 5.706 13 C 0.499 3.501 14 O -0.598 6.598 15 C -0.098 4.098 16 C -0.039 4.039 17 C -0.143 4.143 18 C -0.083 4.083 19 C -0.475 4.475 20 S 1.396 4.604 21 C -0.493 4.493 22 O -0.933 6.933 23 C -0.035 4.035 24 C -0.135 4.135 25 H 0.007 0.993 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.265 0.735 29 H 0.407 0.593 30 H 0.123 0.877 31 H 0.137 0.863 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.191 0.809 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.654 -1.874 -20.970 24.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.015 0.985 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.182 1.182 12 N -0.355 5.355 13 C 0.286 3.714 14 O -0.480 6.480 15 C -0.138 4.138 16 C -0.040 4.040 17 C -0.163 4.163 18 C -0.102 4.102 19 C -0.570 4.570 20 S 1.594 4.406 21 C -0.651 4.651 22 O -0.929 6.929 23 C -0.053 4.053 24 C -0.154 4.154 25 H 0.026 0.974 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.141 0.859 31 H 0.155 0.845 32 H 0.136 0.864 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.141 0.859 36 H 0.163 0.837 37 H 0.208 0.792 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.081 0.010 -20.865 24.111 hybrid contribution -1.880 -2.416 0.812 3.167 sum 10.201 -2.406 -20.053 22.627 Atomic orbital electron populations 1.21911 0.98748 0.99376 0.99310 1.18295 0.90798 0.91939 0.82204 0.98550 1.21560 1.32536 1.13585 0.90674 0.90544 1.25853 0.94862 0.95599 1.02512 1.70064 1.37065 1.24082 1.24621 0.85310 0.77761 0.79214 0.77835 1.20194 1.21169 1.18220 1.46271 1.65295 1.14317 1.09629 1.21206 0.77616 0.87121 0.85454 1.90673 1.52779 1.18609 1.85889 1.20821 1.06205 0.97829 0.88901 1.19763 0.94304 0.96212 0.93694 1.21186 0.98474 1.00286 0.96306 1.21051 0.97507 0.94510 0.97125 1.27900 0.98686 1.13730 1.16725 1.68478 0.97113 0.91778 0.83194 1.27724 1.10241 1.11825 1.15313 1.92982 1.37671 1.77487 1.84741 1.21380 0.97685 0.94813 0.91453 1.21567 0.98248 0.96787 0.98777 0.97420 0.94016 0.91592 0.92581 0.75754 0.85885 0.84509 0.86415 0.87706 0.92086 0.85920 0.83745 0.79228 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.99 9.26 71.98 0.67 -6.32 16 2 C 0.27 14.12 2.56 44.24 0.11 14.23 16 3 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 4 C -0.55 -28.61 8.73 25.60 0.22 -28.39 16 5 H 0.08 3.69 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.62 5.30 84.66 0.45 1.07 16 7 N -0.92 -53.20 11.32 21.45 0.24 -52.95 16 8 Si 0.97 41.62 29.54 68.60 2.03 43.64 16 9 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 10 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 12 N -0.71 -28.52 5.07 -446.12 -2.26 -30.78 16 13 C 0.50 19.34 7.79 87.66 0.68 20.02 16 14 O -0.60 -29.66 15.70 -3.03 -0.05 -29.71 16 15 C -0.10 -2.49 5.83 29.10 0.17 -2.32 16 16 C -0.04 -1.08 4.37 -19.86 -0.09 -1.16 16 17 C -0.14 -4.30 9.70 22.27 0.22 -4.08 16 18 C -0.08 -2.45 9.44 22.27 0.21 -2.24 16 19 C -0.47 -10.49 5.61 22.27 0.12 -10.36 16 20 S 1.40 21.43 14.19 -56.49 -0.80 20.63 16 21 C -0.49 -5.04 10.70 113.37 1.21 -3.83 16 22 O -0.93 -29.30 16.90 -148.98 -2.52 -31.81 16 23 C -0.03 -0.61 9.75 22.27 0.22 -0.39 16 24 C -0.13 -3.05 9.70 22.27 0.22 -2.83 16 25 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 28 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.41 13.33 8.54 -92.71 -0.79 12.54 16 30 H 0.12 2.51 8.08 -2.39 -0.02 2.49 16 31 H 0.14 2.49 8.09 -2.39 -0.02 2.47 16 32 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 33 H 0.10 3.36 7.45 -2.91 -0.02 3.34 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.19 1.08 8.06 -2.91 -0.02 1.05 16 38 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -87.48 339.53 1.33 -86.15 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.28 Total: 21.43 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 4.42 Total: -26.60 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -2.02 Total: -83.74 kcal Atomic # 8 Polarization: -58.96 SS G_CDS: -2.57 Total: -61.52 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 21.43 SS G_CDS: -0.80 Total: 20.63 kcal Total: -87.48 1.33 -86.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435464303.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.774 kcal (2) G-P(sol) polarization free energy of solvation -87.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds