Wall clock time and date at job start Tue Mar 31 2020 07:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 C 1.50703 * 109.47394 * 180.02562 * 15 13 12 17 17 C 1.38229 * 119.99455 * 269.72782 * 16 15 13 18 18 C 1.38243 * 119.99755 * 179.74420 * 17 16 15 19 19 C 1.38237 * 119.99643 * 0.52393 * 18 17 16 20 20 S 1.76196 * 119.99808 * 179.77209 * 19 18 17 21 21 C 1.81403 * 102.99826 * 269.97917 * 20 19 18 22 22 O 1.42095 * 103.00043 * 156.12913 * 20 19 18 23 23 C 1.38233 * 119.99947 * 359.75155 * 19 18 17 24 24 C 1.38227 * 120.00116 * 89.99734 * 16 15 13 25 25 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 26 26 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 27 27 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 28 28 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 29 29 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 30 30 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 31 31 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 32 32 H 1.08000 * 120.00284 * 359.97438 * 17 16 15 33 33 H 1.07996 * 119.99718 * 180.29906 * 18 17 16 34 34 H 1.08997 * 109.47007 * 60.00022 * 21 20 19 35 35 H 1.09001 * 109.47319 * 179.97438 * 21 20 19 36 36 H 1.09000 * 109.47428 * 299.99754 * 21 20 19 37 37 H 1.08006 * 119.99803 * 180.02562 * 23 19 18 38 38 H 1.08003 * 120.00216 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 6 2.7010 0.2402 -4.7410 17 6 1.6022 0.3911 -5.5659 18 6 1.6472 1.2834 -6.6209 19 6 2.7950 2.0168 -6.8572 20 16 2.8545 3.1496 -8.2054 21 6 3.4729 2.1273 -9.5704 22 8 3.8629 4.0680 -7.8069 23 6 3.8958 1.8616 -6.0356 24 6 3.8487 0.9735 -4.9774 25 1 -0.3633 0.6171 -0.8218 26 1 -0.3634 -1.0201 -0.1234 27 1 -0.3633 0.4033 0.9453 28 1 1.9020 -1.9133 3.4363 29 1 2.2490 -1.6317 -1.1527 30 1 3.6492 -1.1201 -3.3980 31 1 1.9777 -1.5505 -3.8327 32 1 0.7072 -0.1853 -5.3841 33 1 0.7870 1.4049 -7.2624 34 1 2.7837 1.3017 -9.7471 35 1 3.5511 2.7342 -10.4724 36 1 4.4552 1.7317 -9.3120 37 1 4.7923 2.4349 -6.2201 38 1 4.7089 0.8521 -4.3357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435464304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:46 Heat of formation + Delta-G solvation = -86.742084 kcal Electronic energy + Delta-G solvation = -20708.189122 eV Core-core repulsion = 17447.735467 eV Total energy + Delta-G solvation = -3260.453655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.02619 -39.72110 -36.89437 -36.81589 -34.51033 -33.96388 -31.92456 -31.59564 -29.67045 -28.51323 -26.89327 -23.76320 -23.67190 -22.18071 -21.21699 -19.79768 -19.06733 -17.91592 -17.66500 -17.05143 -16.77295 -16.15525 -15.79645 -15.70965 -15.52594 -15.06311 -14.77854 -14.64174 -14.53708 -14.36278 -14.23918 -13.67836 -13.58286 -13.43127 -13.29123 -13.05913 -12.88071 -12.53415 -12.45190 -12.05094 -12.02051 -11.77486 -11.28336 -11.25087 -10.91095 -10.48274 -10.02320 -9.92352 -9.89433 -9.32707 -8.83313 -6.44758 -0.08047 0.42903 0.98407 1.43586 1.46757 1.67411 1.74388 1.80292 2.38330 2.40506 2.80026 2.92568 3.02695 3.62959 3.80114 4.04454 4.08818 4.26937 4.34408 4.44427 4.50171 4.52881 4.55081 4.68443 4.71732 4.78063 4.88870 5.05983 5.08894 5.18384 5.27044 5.28382 5.42818 5.56478 5.63459 5.65906 5.99919 6.00073 6.51240 6.83672 7.24579 7.43604 8.54181 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.032369 B = 0.002983 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.820087 B = 9383.412711 C = 9709.418734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.245 3.755 3 H 0.016 0.984 4 C -0.622 4.622 5 H 0.044 0.956 6 C 0.004 3.996 7 N -0.919 5.919 8 Si 1.065 2.935 9 H -0.279 1.279 10 H -0.279 1.279 11 H -0.253 1.253 12 N -0.704 5.704 13 C 0.502 3.498 14 O -0.591 6.591 15 C -0.100 4.100 16 C -0.039 4.039 17 C -0.132 4.132 18 C -0.034 4.034 19 C -0.474 4.474 20 S 1.398 4.602 21 C -0.494 4.494 22 O -0.933 6.933 23 C -0.082 4.082 24 C -0.144 4.144 25 H 0.038 0.962 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.262 0.738 29 H 0.406 0.594 30 H 0.118 0.882 31 H 0.139 0.861 32 H 0.151 0.849 33 H 0.192 0.808 34 H 0.144 0.856 35 H 0.122 0.878 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.020 0.371 -28.650 28.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.140 3.860 3 H 0.034 0.966 4 C -0.660 4.660 5 H 0.062 0.938 6 C -0.199 4.199 7 N -0.552 5.552 8 Si 0.888 3.112 9 H -0.204 1.204 10 H -0.205 1.205 11 H -0.178 1.178 12 N -0.353 5.353 13 C 0.290 3.710 14 O -0.472 6.472 15 C -0.139 4.139 16 C -0.040 4.040 17 C -0.151 4.151 18 C -0.052 4.052 19 C -0.570 4.570 20 S 1.596 4.404 21 C -0.652 4.652 22 O -0.929 6.929 23 C -0.101 4.101 24 C -0.164 4.164 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.241 0.759 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.169 0.831 33 H 0.209 0.791 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.705 3.327 -27.530 28.127 hybrid contribution 3.132 -2.828 0.337 4.234 sum -1.573 0.499 -27.193 27.243 Atomic orbital electron populations 1.22275 0.97490 1.00776 0.99983 1.18680 0.91505 0.92786 0.83001 0.96621 1.22180 1.41045 1.10392 0.92358 0.93799 1.26666 0.92747 1.08567 0.91894 1.70961 1.45491 1.06095 1.32690 0.83753 0.78630 0.72152 0.76706 1.20432 1.20513 1.17760 1.46137 1.65510 1.14340 1.09337 1.21159 0.77455 0.87132 0.85284 1.90662 1.52656 1.18021 1.85850 1.20812 1.05661 0.98276 0.89156 1.19724 0.94186 0.95557 0.94528 1.21561 0.97878 1.00096 0.95556 1.21396 0.96676 0.90971 0.96174 1.27912 0.98867 1.14650 1.15554 1.68462 1.10137 0.78517 0.83243 1.27732 1.08910 1.13910 1.14632 1.92983 1.64512 1.54745 1.80647 1.21037 0.98241 0.95766 0.95103 1.21175 0.98957 0.97916 0.98308 0.94279 0.92626 0.93266 0.92886 0.75903 0.86412 0.84330 0.83115 0.79107 0.83737 0.85966 0.92176 0.87850 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.42 9.20 71.98 0.66 -5.76 16 2 C 0.25 11.67 2.16 44.24 0.10 11.76 16 3 H 0.02 0.84 6.15 -2.38 -0.01 0.82 16 4 C -0.62 -33.71 8.95 25.60 0.23 -33.48 16 5 H 0.04 2.49 7.96 -2.91 -0.02 2.47 16 6 C 0.00 0.21 5.19 84.66 0.44 0.65 16 7 N -0.92 -55.01 13.70 21.45 0.29 -54.71 16 8 Si 1.06 50.92 26.44 68.60 1.81 52.74 16 9 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.25 -11.19 6.14 99.48 0.61 -10.58 16 12 N -0.70 -27.11 5.07 -446.11 -2.26 -29.38 16 13 C 0.50 18.07 7.79 87.66 0.68 18.75 16 14 O -0.59 -26.58 15.70 -3.02 -0.05 -26.63 16 15 C -0.10 -2.38 5.83 29.10 0.17 -2.21 16 16 C -0.04 -1.01 4.37 -19.87 -0.09 -1.10 16 17 C -0.13 -2.66 9.70 22.27 0.22 -2.44 16 18 C -0.03 -0.52 9.75 22.27 0.22 -0.30 16 19 C -0.47 -9.73 5.61 22.27 0.12 -9.60 16 20 S 1.40 19.63 14.19 -56.49 -0.80 18.83 16 21 C -0.49 -4.62 10.70 113.37 1.21 -3.40 16 22 O -0.93 -28.23 16.90 -148.98 -2.52 -30.74 16 23 C -0.08 -2.33 9.44 22.27 0.21 -2.12 16 24 C -0.14 -4.17 9.70 22.27 0.22 -3.95 16 25 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.05 2.22 5.47 -2.39 -0.01 2.21 16 28 H 0.26 15.60 8.73 -92.71 -0.81 14.79 16 29 H 0.41 13.43 8.53 -92.71 -0.79 12.63 16 30 H 0.12 2.41 8.09 -2.38 -0.02 2.39 16 31 H 0.14 2.28 8.08 -2.39 -0.02 2.26 16 32 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16 34 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.10 3.22 7.45 -2.91 -0.02 3.20 16 38 H 0.11 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -86.82 336.10 1.02 -85.80 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.15 Total: 17.30 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 4.39 Total: -33.21 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -1.97 Total: -84.09 kcal Atomic # 8 Polarization: -54.81 SS G_CDS: -2.56 Total: -57.37 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 1.81 Total: 52.74 kcal Atomic # 16 Polarization: 19.63 SS G_CDS: -0.80 Total: 18.83 kcal Total: -86.82 1.02 -85.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435464304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.941 kcal (2) G-P(sol) polarization free energy of solvation -86.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds