Wall clock time and date at job start Tue Mar 31 2020 07:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47007 * 2 1 4 4 O 1.21297 * 119.99790 * 359.97438 * 3 2 1 5 5 C 1.46856 * 119.99770 * 180.02562 * 3 2 1 6 6 C 1.40031 * 120.10301 * 180.02562 * 5 3 2 7 7 C 1.37618 * 119.92126 * 179.97438 * 6 5 3 8 8 C 1.39017 * 120.14293 * 0.02562 * 7 6 5 9 9 O 1.35716 * 119.89085 * 179.97438 * 8 7 6 10 10 C 1.42909 * 116.99843 * 0.02562 * 9 8 7 11 11 C 1.50698 * 109.46860 * 179.97438 * 10 9 8 12 12 O 1.21298 * 120.00296 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99908 * 179.97438 * 11 10 9 14 14 C 1.37100 * 120.00229 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99659 * 0.02562 * 14 13 11 16 16 C 1.38950 * 120.00166 * 180.02562 * 14 13 11 17 17 N 1.31411 * 119.99688 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99930 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47111 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47168 * 120.00166 * 18 16 14 21 21 H 1.48494 * 109.47285 * 240.00275 * 18 16 14 22 22 C 1.39241 * 120.21821 * 0.02562 * 8 7 6 23 23 F 1.35104 * 119.96521 * 179.97438 * 22 8 7 24 24 C 1.37795 * 120.07267 * 0.23115 * 22 8 7 25 25 H 1.09000 * 109.47207 * 300.00415 * 1 2 3 26 26 H 1.09003 * 109.47216 * 60.00572 * 1 2 3 27 27 H 1.08999 * 109.47031 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46955 * 239.99956 * 2 1 3 29 29 H 1.08998 * 109.46531 * 119.99372 * 2 1 3 30 30 H 1.07994 * 120.04049 * 359.96798 * 6 5 3 31 31 H 1.08002 * 119.92906 * 179.97438 * 7 6 5 32 32 H 1.08996 * 109.47049 * 299.99857 * 10 9 8 33 33 H 1.08993 * 109.47051 * 60.00062 * 10 9 8 34 34 H 0.97003 * 120.00166 * 0.02562 * 13 11 10 35 35 H 0.97001 * 119.99222 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.07117 * 179.74285 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3428 -0.0005 5 6 3.4762 1.6892 -0.0006 6 6 3.9453 3.0086 0.0000 7 6 5.2991 3.2557 0.0000 8 6 6.2018 2.1984 -0.0011 9 8 7.5358 2.4481 -0.0016 10 6 7.9393 3.8190 -0.0005 11 6 9.4441 3.8997 -0.0006 12 8 10.1060 2.8832 -0.0012 13 7 10.0545 5.1012 -0.0002 14 6 11.4236 5.1747 -0.0008 15 1 12.0129 4.2696 -0.0022 16 6 12.0529 6.4135 0.0002 17 7 11.3358 7.5147 0.0013 18 14 13.9182 6.5135 0.0000 19 1 14.4874 5.1419 -0.0020 20 1 14.3748 7.2402 -1.2119 21 1 14.3752 7.2379 1.2130 22 6 5.7417 0.8842 -0.0027 23 9 6.6235 -0.1394 -0.0043 24 6 4.3881 0.6265 -0.0081 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5137 0.8901 30 1 3.2456 3.8312 0.0003 31 1 5.6611 4.2733 0.0000 32 1 7.5485 4.3135 -0.8897 33 1 7.5495 4.3117 0.8902 34 1 9.5253 5.9142 0.0007 35 1 11.7752 8.3795 0.0024 36 1 4.0313 -0.3928 -0.0135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489631888.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:31 Heat of formation + Delta-G solvation = -135.597791 kcal Electronic energy + Delta-G solvation = -22292.034424 eV Core-core repulsion = 18463.249051 eV Total energy + Delta-G solvation = -3828.785373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.80843 -40.53474 -39.60730 -38.16381 -36.95683 -34.08983 -33.32049 -31.47640 -31.03529 -30.66545 -28.32040 -25.59597 -24.81884 -23.20660 -22.49154 -20.15929 -19.49933 -18.59257 -18.12190 -17.22452 -16.94205 -16.37741 -16.15804 -15.74156 -15.61719 -15.24977 -15.03675 -14.82063 -14.66523 -14.10153 -13.70541 -13.57895 -13.36592 -13.07942 -12.67844 -12.53193 -12.25225 -12.14461 -12.02220 -11.66859 -11.51342 -11.40926 -11.24180 -10.97719 -10.43059 -10.35438 -9.98277 -9.67765 -9.26682 -8.60167 -8.37500 -8.14534 -6.56140 -3.97975 0.36575 0.89627 2.09972 2.83858 3.07847 3.21133 3.29100 3.37158 3.65016 3.66011 4.00081 4.10494 4.33691 4.58568 4.65428 4.76003 4.80941 4.85382 4.95474 5.06207 5.12535 5.24532 5.31593 5.47472 5.49307 5.54219 5.57758 5.76326 5.81449 5.85958 5.96747 6.02963 6.34246 7.16130 7.25935 7.42984 7.87741 8.41631 9.01632 9.32057 9.81955 10.61105 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.038890 B = 0.002641 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.811258 B =10600.910424 C =11294.972070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.172 4.172 3 C 0.403 3.597 4 O -0.456 6.456 5 C -0.199 4.199 6 C -0.024 4.024 7 C -0.203 4.203 8 C 0.143 3.857 9 O -0.268 6.268 10 C 0.046 3.954 11 C 0.438 3.562 12 O -0.571 6.571 13 N -0.552 5.552 14 C -0.302 4.302 15 H 0.107 0.893 16 C 0.025 3.975 17 N -0.897 5.897 18 Si 0.934 3.066 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.055 3.945 23 F -0.125 7.125 24 C -0.069 4.069 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.142 0.858 31 H 0.148 0.852 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.394 0.606 35 H 0.274 0.726 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.089 -9.580 -0.005 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.210 4.210 3 C 0.282 3.718 4 O -0.332 6.332 5 C -0.200 4.200 6 C -0.042 4.042 7 C -0.222 4.222 8 C 0.094 3.906 9 O -0.178 6.178 10 C -0.033 4.033 11 C 0.222 3.778 12 O -0.455 6.455 13 N -0.189 5.189 14 C -0.431 4.431 15 H 0.125 0.875 16 C -0.177 4.177 17 N -0.538 5.538 18 Si 0.760 3.240 19 H -0.190 1.190 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.035 3.965 23 F -0.104 7.104 24 C -0.088 4.088 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.228 0.772 35 H 0.084 0.916 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.767 -9.756 -0.007 21.151 hybrid contribution 0.809 0.703 0.001 1.072 sum -17.958 -9.053 -0.006 20.111 Atomic orbital electron populations 1.21592 0.93572 1.01829 1.03117 1.22012 0.98435 0.95744 1.04791 1.22263 0.87353 0.91265 0.70953 1.90531 1.58170 1.47758 1.36762 1.20133 0.94852 0.93519 1.11502 1.21241 0.94840 0.96317 0.91809 1.21259 0.93184 0.99067 1.08687 1.19603 0.84650 0.92894 0.93446 1.86256 1.17455 1.28201 1.85896 1.22712 0.97423 0.80356 1.02764 1.19208 0.87032 0.85239 0.86307 1.90597 1.65460 1.34517 1.54912 1.41692 1.07708 1.05651 1.63850 1.19785 0.80832 0.94396 1.48082 0.87532 1.25315 1.01010 0.94610 0.96808 1.69613 1.36493 0.97966 1.49698 0.85733 0.81665 0.78746 0.77843 1.19049 1.20577 1.20572 1.16792 0.87055 0.82086 1.10535 1.91557 1.67859 1.56688 1.94282 1.21188 0.89898 1.00384 0.97362 0.92096 0.92091 0.92020 0.88193 0.88192 0.83974 0.83418 0.89750 0.89755 0.77213 0.91637 0.83263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.20 37.16 0.34 -0.60 16 2 C -0.17 -1.08 5.02 -27.88 -0.14 -1.22 16 3 C 0.40 3.86 7.11 -30.82 -0.22 3.64 16 4 O -0.46 -5.66 15.96 5.54 0.09 -5.57 16 5 C -0.20 -2.03 5.87 -105.07 -0.62 -2.64 16 6 C -0.02 -0.25 9.59 -39.14 -0.38 -0.63 16 7 C -0.20 -2.38 9.01 -39.52 -0.36 -2.74 16 8 C 0.14 2.09 6.70 -38.92 -0.26 1.83 16 9 O -0.27 -4.93 9.52 -38.76 -0.37 -5.29 16 10 C 0.05 0.79 5.21 36.00 0.19 0.97 16 11 C 0.44 10.25 7.86 -10.99 -0.09 10.16 16 12 O -0.57 -15.97 16.08 -14.37 -0.23 -16.21 16 13 N -0.55 -13.47 5.29 -10.96 -0.06 -13.53 16 14 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 15 H 0.11 3.05 7.16 -52.49 -0.38 2.68 16 16 C 0.03 0.65 5.50 -17.47 -0.10 0.55 16 17 N -0.90 -23.47 13.05 55.50 0.72 -22.74 16 18 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 C 0.06 0.75 7.30 -39.37 -0.29 0.46 16 23 F -0.13 -1.94 17.10 2.25 0.04 -1.90 16 24 C -0.07 -0.69 9.43 -39.07 -0.37 -1.06 16 25 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 26 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.10 0.47 8.07 -51.93 -0.42 0.05 16 29 H 0.10 0.47 8.09 -51.93 -0.42 0.05 16 30 H 0.14 1.37 7.64 -52.49 -0.40 0.97 16 31 H 0.15 1.47 6.27 -52.49 -0.33 1.14 16 32 H 0.08 1.19 7.65 -51.93 -0.40 0.80 16 33 H 0.08 1.19 7.65 -51.93 -0.40 0.80 16 34 H 0.39 8.93 7.90 -40.82 -0.32 8.61 16 35 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.15 1.00 7.04 -52.49 -0.37 0.63 16 LS Contribution 325.47 15.07 4.90 4.90 Total: -1.00 -33.01 325.47 -6.18 -39.18 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -3.83 Total: 5.34 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -2.42 Total: 0.41 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.67 Total: -36.27 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.51 Total: -27.07 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.01 -6.18 -39.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489631888.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.415 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds