Wall clock time and date at job start Tue Mar 31 2020 07:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47007 * 2 1 4 4 O 1.21297 * 119.99790 * 359.97438 * 3 2 1 5 5 C 1.46856 * 119.99770 * 180.02562 * 3 2 1 6 6 C 1.40031 * 120.10301 * 180.02562 * 5 3 2 7 7 C 1.37618 * 119.92126 * 179.97438 * 6 5 3 8 8 C 1.39017 * 120.14293 * 0.02562 * 7 6 5 9 9 O 1.35716 * 119.89085 * 179.97438 * 8 7 6 10 10 C 1.42909 * 116.99843 * 0.02562 * 9 8 7 11 11 C 1.50698 * 109.46860 * 179.97438 * 10 9 8 12 12 O 1.21298 * 120.00296 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99908 * 179.97438 * 11 10 9 14 14 C 1.37100 * 120.00229 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99659 * 0.02562 * 14 13 11 16 16 C 1.38950 * 120.00166 * 180.02562 * 14 13 11 17 17 N 1.31411 * 119.99688 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99930 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47111 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47168 * 120.00166 * 18 16 14 21 21 H 1.48494 * 109.47285 * 240.00275 * 18 16 14 22 22 C 1.39241 * 120.21821 * 0.02562 * 8 7 6 23 23 F 1.35104 * 119.96521 * 179.97438 * 22 8 7 24 24 C 1.37795 * 120.07267 * 0.23115 * 22 8 7 25 25 H 1.09000 * 109.47207 * 300.00415 * 1 2 3 26 26 H 1.09003 * 109.47216 * 60.00572 * 1 2 3 27 27 H 1.08999 * 109.47031 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46955 * 239.99956 * 2 1 3 29 29 H 1.08998 * 109.46531 * 119.99372 * 2 1 3 30 30 H 1.07994 * 120.04049 * 359.96798 * 6 5 3 31 31 H 1.08002 * 119.92906 * 179.97438 * 7 6 5 32 32 H 1.08996 * 109.47049 * 299.99857 * 10 9 8 33 33 H 1.08993 * 109.47051 * 60.00062 * 10 9 8 34 34 H 0.97003 * 120.00166 * 0.02562 * 13 11 10 35 35 H 0.97001 * 119.99222 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.07117 * 179.74285 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3428 -0.0005 5 6 3.4762 1.6892 -0.0006 6 6 3.9453 3.0086 0.0000 7 6 5.2991 3.2557 0.0000 8 6 6.2018 2.1984 -0.0011 9 8 7.5358 2.4481 -0.0016 10 6 7.9393 3.8190 -0.0005 11 6 9.4441 3.8997 -0.0006 12 8 10.1060 2.8832 -0.0012 13 7 10.0545 5.1012 -0.0002 14 6 11.4236 5.1747 -0.0008 15 1 12.0129 4.2696 -0.0022 16 6 12.0529 6.4135 0.0002 17 7 11.3358 7.5147 0.0013 18 14 13.9182 6.5135 0.0000 19 1 14.4874 5.1419 -0.0020 20 1 14.3748 7.2402 -1.2119 21 1 14.3752 7.2379 1.2130 22 6 5.7417 0.8842 -0.0027 23 9 6.6235 -0.1394 -0.0043 24 6 4.3881 0.6265 -0.0081 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5137 0.8901 30 1 3.2456 3.8312 0.0003 31 1 5.6611 4.2733 0.0000 32 1 7.5485 4.3135 -0.8897 33 1 7.5495 4.3117 0.8902 34 1 9.5253 5.9142 0.0007 35 1 11.7752 8.3795 0.0024 36 1 4.0313 -0.3928 -0.0135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489631888.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:30 Heat of formation + Delta-G solvation = -156.627546 kcal Electronic energy + Delta-G solvation = -22292.946342 eV Core-core repulsion = 18463.249051 eV Total energy + Delta-G solvation = -3829.697292 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.89216 -41.55095 -40.69183 -39.77862 -38.08472 -36.08199 -33.92045 -33.44808 -31.89284 -31.68902 -29.73022 -26.78854 -26.17997 -24.22836 -23.32843 -21.52216 -20.70143 -20.09223 -19.62607 -18.18857 -18.09497 -17.58835 -17.49213 -16.86653 -16.59989 -16.57262 -16.27854 -16.02578 -15.68614 -15.57798 -15.10727 -15.04999 -14.29974 -14.20274 -13.73623 -13.60216 -13.45082 -13.27855 -13.08131 -12.94937 -12.58849 -12.49013 -12.37153 -12.18425 -12.13074 -11.97721 -11.61543 -10.74924 -10.53163 -10.14418 -10.13365 -9.41123 -8.55007 -6.04926 -0.51549 0.00630 1.27911 1.32854 1.40712 1.52525 1.67007 1.85397 2.30340 2.50741 2.88236 3.08774 3.10807 3.15687 3.57414 3.69087 3.95297 4.01202 4.07979 4.14132 4.20315 4.32510 4.36257 4.38360 4.59990 4.84183 4.86647 4.94505 5.05422 5.10577 5.19535 5.35160 5.37498 5.41350 5.85453 6.08169 6.47682 6.52626 7.01944 7.38335 7.93637 8.61981 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.038890 B = 0.002641 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.811258 B =10600.910424 C =11294.972070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.170 4.170 3 C 0.406 3.594 4 O -0.488 6.488 5 C -0.195 4.195 6 C -0.026 4.026 7 C -0.196 4.196 8 C 0.115 3.885 9 O -0.307 6.307 10 C 0.059 3.941 11 C 0.432 3.568 12 O -0.626 6.626 13 N -0.555 5.555 14 C -0.338 4.338 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.912 5.912 18 Si 0.995 3.005 19 H -0.275 1.275 20 H -0.268 1.268 21 H -0.268 1.268 22 C 0.030 3.970 23 F -0.144 7.144 24 C -0.047 4.047 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.154 0.846 31 H 0.165 0.835 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.402 0.598 35 H 0.281 0.719 36 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.770 -9.640 -0.006 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.207 4.207 3 C 0.287 3.713 4 O -0.366 6.366 5 C -0.196 4.196 6 C -0.044 4.044 7 C -0.214 4.214 8 C 0.067 3.933 9 O -0.219 6.219 10 C -0.018 4.018 11 C 0.218 3.782 12 O -0.513 6.513 13 N -0.193 5.193 14 C -0.468 4.468 15 H 0.097 0.903 16 C -0.207 4.207 17 N -0.552 5.552 18 Si 0.818 3.182 19 H -0.199 1.199 20 H -0.193 1.193 21 H -0.193 1.193 22 C 0.010 3.990 23 F -0.123 7.123 24 C -0.065 4.065 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.172 0.828 31 H 0.183 0.817 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.237 0.763 35 H 0.091 0.909 36 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -20.488 -9.789 -0.008 22.707 hybrid contribution 1.178 0.687 0.001 1.364 sum -19.310 -9.102 -0.007 21.348 Atomic orbital electron populations 1.21610 0.93897 1.02802 1.01946 1.22115 0.98139 0.93480 1.06976 1.22701 0.86539 0.92548 0.69545 1.90535 1.58645 1.49079 1.38316 1.20408 0.95579 0.93447 1.10185 1.21475 0.94589 0.97210 0.91132 1.21402 0.93115 0.99126 1.07764 1.19885 0.83449 0.94166 0.95820 1.86175 1.19995 1.28419 1.87330 1.22534 0.92391 0.81064 1.05836 1.20282 0.89866 0.83957 0.84050 1.90554 1.67668 1.36202 1.56840 1.41703 1.07120 1.06485 1.63989 1.19702 0.82273 0.94097 1.50687 0.90267 1.26064 1.05133 0.93874 0.95673 1.69654 1.38055 0.98361 1.49120 0.84841 0.76473 0.78309 0.78545 1.19932 1.19338 1.19328 1.17229 0.88126 0.81468 1.12135 1.91506 1.68742 1.57372 1.94635 1.21467 0.88036 1.02144 0.94863 0.93312 0.93305 0.89956 0.85800 0.85811 0.82805 0.81716 0.86496 0.86507 0.76267 0.90908 0.79583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.20 71.98 0.66 -0.86 16 2 C -0.17 -1.50 5.02 29.85 0.15 -1.35 16 3 C 0.41 6.68 7.11 27.94 0.20 6.88 16 4 O -0.49 -11.25 15.96 -3.08 -0.05 -11.30 16 5 C -0.19 -3.45 5.87 -20.15 -0.12 -3.57 16 6 C -0.03 -0.50 9.59 22.56 0.22 -0.28 16 7 C -0.20 -4.23 9.01 22.31 0.20 -4.03 16 8 C 0.11 3.27 6.70 22.70 0.15 3.42 16 9 O -0.31 -11.40 9.52 -71.34 -0.68 -12.07 16 10 C 0.06 2.00 5.21 71.24 0.37 2.37 16 11 C 0.43 20.71 7.86 87.66 0.69 21.40 16 12 O -0.63 -36.58 16.08 15.95 0.26 -36.32 16 13 N -0.56 -27.65 5.29 -306.98 -1.62 -29.28 16 14 C -0.34 -18.87 9.68 84.04 0.81 -18.05 16 15 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 16 C -0.01 -0.33 5.50 84.93 0.47 0.13 16 17 N -0.91 -47.17 13.05 21.66 0.28 -46.89 16 18 Si 1.00 41.79 29.55 68.60 2.03 43.82 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 C 0.03 0.79 7.30 22.41 0.16 0.95 16 23 F -0.14 -4.48 17.10 44.97 0.77 -3.72 16 24 C -0.05 -0.80 9.43 22.60 0.21 -0.59 16 25 H 0.05 0.63 8.10 -2.39 -0.02 0.61 16 26 H 0.05 0.63 8.10 -2.39 -0.02 0.61 16 27 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.12 0.58 8.07 -2.39 -0.02 0.56 16 29 H 0.12 0.58 8.09 -2.39 -0.02 0.56 16 30 H 0.15 2.61 7.64 -2.91 -0.02 2.59 16 31 H 0.17 2.87 6.27 -2.91 -0.02 2.85 16 32 H 0.12 3.11 7.65 -2.39 -0.02 3.10 16 33 H 0.12 3.11 7.65 -2.39 -0.02 3.09 16 34 H 0.40 18.31 7.90 -92.71 -0.73 17.57 16 35 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 36 H 0.19 1.71 7.04 -2.91 -0.02 1.69 16 Total: -1.00 -74.82 325.47 5.57 -69.25 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.40 Total: 20.09 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 4.18 Total: 6.41 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -1.34 Total: -76.16 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -0.47 Total: -59.69 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.77 Total: -3.72 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -74.82 5.57 -69.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489631888.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.373 kcal (2) G-P(sol) polarization free energy of solvation -74.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds