Wall clock time and date at job start Tue Mar 31 2020 07:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46708 * 189.31212 * 3 2 1 5 5 C 1.36686 * 119.99812 * 96.25718 * 4 3 2 6 6 H 1.08001 * 119.99700 * 155.38190 * 5 4 3 7 7 C 1.39114 * 119.99961 * 335.38113 * 5 4 3 8 8 N 1.31324 * 120.00442 * 4.55225 * 7 5 4 9 9 Si 1.86808 * 119.99929 * 184.55178 * 7 5 4 10 10 H 1.48498 * 109.47257 * 59.99518 * 9 7 5 11 11 H 1.48499 * 109.47044 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46757 * 299.99990 * 9 7 5 13 13 C 1.34778 * 119.99875 * 276.25228 * 4 3 2 14 14 O 1.21817 * 119.99721 * 180.02562 * 13 4 3 15 15 C 1.41557 * 120.00306 * 0.02562 * 13 4 3 16 16 C 1.35605 * 120.00368 * 173.36855 * 15 13 4 17 17 C 1.41792 * 119.99483 * 350.90855 * 16 15 13 18 18 C 1.36376 * 125.17376 * 138.76247 * 17 16 15 19 19 C 1.46136 * 106.04267 * 179.97438 * 18 17 16 20 20 C 1.39766 * 134.15006 * 180.02562 * 19 18 17 21 21 C 1.36629 * 119.69886 * 179.97438 * 20 19 18 22 22 C 1.38824 * 120.44424 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.74643 * 0.02562 * 22 21 20 24 24 C 1.38938 * 119.87500 * 359.94871 * 23 22 21 25 25 O 1.34799 * 133.17509 * 180.30294 * 24 23 22 26 26 H 4.40638 * 5.51395 * 180.02562 * 4 1 2 27 27 H 1.08995 * 109.47280 * 69.31587 * 3 2 1 28 28 H 1.09004 * 109.47240 * 309.30952 * 3 2 1 29 29 H 0.97001 * 119.99994 * 180.02562 * 8 7 5 30 30 H 1.08005 * 119.99631 * 353.37329 * 15 13 4 31 31 H 1.07998 * 120.00333 * 170.90708 * 16 15 13 32 32 H 1.07993 * 126.97727 * 359.91950 * 18 17 16 33 33 H 1.07998 * 120.14887 * 359.96860 * 20 19 18 34 34 H 1.08002 * 119.77798 * 179.97438 * 21 20 19 35 35 H 1.07998 * 119.62333 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.06058 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1336 1.3640 0.2235 5 6 3.4828 1.7671 1.4820 6 1 4.1873 2.5749 1.6142 7 6 2.9306 1.1369 2.5925 8 7 2.1438 0.0975 2.4342 9 14 3.3085 1.7693 4.3093 10 1 2.8502 3.1765 4.4305 11 1 2.6040 0.9305 5.3119 12 1 4.7724 1.7030 4.5500 13 6 3.2379 2.2205 -0.8118 14 8 3.6438 3.3540 -0.6260 15 6 2.8758 1.8031 -2.1151 16 6 2.8518 2.6998 -3.1321 17 6 2.9991 4.0837 -2.8607 18 6 3.7418 4.9549 -3.6017 19 6 3.6007 6.2577 -2.9548 20 6 4.1024 7.5352 -3.2187 21 6 3.7717 8.5754 -2.3970 22 6 2.9420 8.3712 -1.3029 23 6 2.4376 7.1186 -1.0248 24 6 2.7592 6.0450 -1.8461 25 8 2.4231 4.7397 -1.8318 26 1 -1.0503 -0.0005 0.0001 27 1 3.0094 -0.3621 -0.9614 28 1 3.0096 -0.6502 0.7952 29 1 1.7585 -0.3416 3.2085 30 1 2.6186 0.7705 -2.2994 31 1 2.7206 2.3599 -4.1488 32 1 4.3180 4.7280 -4.4865 33 1 4.7487 7.6992 -4.0683 34 1 4.1590 9.5630 -2.5995 35 1 2.6894 9.2029 -0.6619 36 1 1.7934 6.9722 -0.1704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490962449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:48 Heat of formation + Delta-G solvation = 99.403722 kcal Electronic energy + Delta-G solvation = -22789.706971 eV Core-core repulsion = 19401.881253 eV Total energy + Delta-G solvation = -3387.825718 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77814 -38.94634 -37.43074 -35.43796 -33.46308 -32.27893 -31.72873 -31.32908 -29.96575 -28.46898 -26.62504 -25.26126 -23.32978 -22.36612 -21.18138 -20.68905 -18.53583 -17.90966 -17.09277 -16.84545 -16.57948 -15.96368 -15.41722 -15.07620 -14.51912 -14.13171 -14.08726 -13.68232 -13.29659 -13.18158 -12.75904 -12.56792 -12.48460 -12.23396 -11.92653 -11.68461 -11.46952 -11.31875 -11.17392 -10.69350 -10.58228 -10.45808 -9.86896 -9.57576 -9.36322 -9.07597 -8.88069 -8.53385 -8.08655 -7.92079 -7.35789 -6.46145 -3.98853 0.91062 1.71266 1.84704 3.07355 3.15380 3.17533 3.22818 3.48326 3.69880 3.94442 4.08487 4.11001 4.37281 4.87138 4.96049 5.03944 5.09187 5.21215 5.40801 5.50004 5.55021 5.58661 5.67242 5.79090 5.94912 5.99900 6.20452 6.28173 6.49945 6.53582 6.64000 6.72789 6.77560 6.84861 6.94132 7.02879 7.10323 7.38026 7.81958 7.97579 8.34446 8.72089 9.03091 9.20038 9.84730 10.49358 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.005036 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.766140 B = 5558.222269 C = 6625.878737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.111 4.111 3 C 0.220 3.780 4 N -0.422 5.422 5 C -0.291 4.291 6 H 0.104 0.896 7 C 0.031 3.969 8 N -0.864 5.864 9 Si 0.932 3.068 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.450 3.550 14 O -0.568 6.568 15 C -0.131 4.131 16 C -0.093 4.093 17 C 0.126 3.874 18 C -0.231 4.231 19 C -0.125 4.125 20 C -0.081 4.081 21 C -0.146 4.146 22 C -0.109 4.109 23 C -0.104 4.104 24 C 0.068 3.932 25 O -0.149 6.149 26 H 0.200 0.800 27 H 0.059 0.941 28 H 0.133 0.867 29 H 0.273 0.727 30 H 0.128 0.872 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.100 5.024 -9.217 10.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.113 4.113 3 C 0.097 3.903 4 N -0.138 5.138 5 C -0.419 4.419 6 H 0.122 0.878 7 C -0.173 4.173 8 N -0.502 5.502 9 Si 0.758 3.242 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.196 1.196 13 C 0.243 3.757 14 O -0.454 6.454 15 C -0.152 4.152 16 C -0.115 4.115 17 C 0.077 3.923 18 C -0.250 4.250 19 C -0.126 4.126 20 C -0.099 4.099 21 C -0.164 4.164 22 C -0.127 4.127 23 C -0.123 4.123 24 C 0.019 3.981 25 O -0.047 6.047 26 H 0.217 0.783 27 H 0.077 0.923 28 H 0.150 0.850 29 H 0.084 0.916 30 H 0.146 0.854 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.055 5.275 -8.700 10.174 hybrid contribution -0.160 -0.040 0.949 0.963 sum -0.105 5.234 -7.751 9.353 Atomic orbital electron populations 1.24336 0.95455 1.02137 1.06586 1.23270 0.94408 0.98368 0.95254 1.18662 0.84190 0.86715 1.00748 1.43729 1.53380 1.09179 1.07521 1.19725 1.23356 1.18047 0.80818 0.87786 1.25501 0.95233 0.95949 1.00668 1.69862 1.29991 1.18933 1.31449 0.85895 0.78722 0.79104 0.80473 1.19662 1.20737 1.19633 1.16866 0.87197 0.86030 0.85565 1.90732 1.51465 1.18613 1.84543 1.22712 0.97776 1.00339 0.94385 1.20398 1.03987 0.88061 0.99064 1.19205 0.95227 0.92635 0.85241 1.22398 1.07668 0.90725 1.04223 1.19872 1.01168 0.94460 0.97115 1.20216 0.99490 0.90660 0.99570 1.20598 1.00749 0.98678 0.96419 1.20785 0.98337 0.95625 0.97946 1.19957 1.03101 0.89730 0.99464 1.19678 0.97966 0.83792 0.96689 1.84361 1.59570 1.17508 1.43286 0.78313 0.92329 0.84986 0.91608 0.85420 0.83392 0.83156 0.86261 0.86139 0.85544 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.44 19.25 29.55 0.57 -4.87 16 2 C -0.11 -2.46 11.44 -37.13 -0.42 -2.88 16 3 C 0.22 4.77 4.79 -6.83 -0.03 4.74 16 4 N -0.42 -10.56 2.59 -121.22 -0.31 -10.87 16 5 C -0.29 -7.86 9.26 -15.06 -0.14 -8.00 16 6 H 0.10 2.95 7.42 -52.49 -0.39 2.56 16 7 C 0.03 0.79 5.36 -17.44 -0.09 0.69 16 8 N -0.86 -21.77 8.72 55.50 0.48 -21.29 16 9 Si 0.93 20.38 29.56 -169.99 -5.02 15.36 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.45 11.04 7.11 -14.99 -0.11 10.93 16 14 O -0.57 -15.66 12.20 -19.64 -0.24 -15.90 16 15 C -0.13 -2.52 8.97 -39.26 -0.35 -2.88 16 16 C -0.09 -1.61 9.91 -39.17 -0.39 -1.99 16 17 C 0.13 2.49 5.17 -38.90 -0.20 2.29 16 18 C -0.23 -4.08 11.05 -37.09 -0.41 -4.49 16 19 C -0.13 -2.30 6.38 -105.19 -0.67 -2.97 16 20 C -0.08 -1.23 10.06 -39.59 -0.40 -1.62 16 21 C -0.15 -1.99 9.98 -39.95 -0.40 -2.39 16 22 C -0.11 -1.56 10.01 -39.50 -0.40 -1.96 16 23 C -0.10 -1.84 10.07 -39.46 -0.40 -2.23 16 24 C 0.07 1.39 7.40 -38.35 -0.28 1.11 16 25 O -0.15 -3.40 7.82 -22.15 -0.17 -3.57 16 26 H 0.20 3.30 7.80 -54.08 -0.42 2.88 16 27 H 0.06 1.05 6.37 -51.93 -0.33 0.72 16 28 H 0.13 3.04 6.08 -51.93 -0.32 2.72 16 29 H 0.27 6.61 8.31 -40.82 -0.34 6.28 16 30 H 0.13 2.07 6.11 -52.48 -0.32 1.75 16 31 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 36 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 318.87 15.07 4.81 4.81 Total: -1.00 -32.17 318.87 -8.04 -40.20 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -3.45 Total: 7.80 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -4.12 Total: -16.54 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.17 Total: -32.16 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.41 Total: -19.47 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.17 -8.04 -40.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.607 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds