Wall clock time and date at job start Tue Mar 31 2020 07:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46708 * 189.31212 * 3 2 1 5 5 C 1.36686 * 119.99812 * 96.25718 * 4 3 2 6 6 H 1.08001 * 119.99700 * 155.38190 * 5 4 3 7 7 C 1.39114 * 119.99961 * 335.38113 * 5 4 3 8 8 N 1.31324 * 120.00442 * 4.55225 * 7 5 4 9 9 Si 1.86808 * 119.99929 * 184.55178 * 7 5 4 10 10 H 1.48498 * 109.47257 * 59.99518 * 9 7 5 11 11 H 1.48499 * 109.47044 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46757 * 299.99990 * 9 7 5 13 13 C 1.34778 * 119.99875 * 276.25228 * 4 3 2 14 14 O 1.21817 * 119.99721 * 180.02562 * 13 4 3 15 15 C 1.41557 * 120.00306 * 0.02562 * 13 4 3 16 16 C 1.35605 * 120.00368 * 173.36855 * 15 13 4 17 17 C 1.41792 * 119.99483 * 350.90855 * 16 15 13 18 18 C 1.36376 * 125.17376 * 138.76247 * 17 16 15 19 19 C 1.46136 * 106.04267 * 179.97438 * 18 17 16 20 20 C 1.39766 * 134.15006 * 180.02562 * 19 18 17 21 21 C 1.36629 * 119.69886 * 179.97438 * 20 19 18 22 22 C 1.38824 * 120.44424 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.74643 * 0.02562 * 22 21 20 24 24 C 1.38938 * 119.87500 * 359.94871 * 23 22 21 25 25 O 1.34799 * 133.17509 * 180.30294 * 24 23 22 26 26 H 4.40638 * 5.51395 * 180.02562 * 4 1 2 27 27 H 1.08995 * 109.47280 * 69.31587 * 3 2 1 28 28 H 1.09004 * 109.47240 * 309.30952 * 3 2 1 29 29 H 0.97001 * 119.99994 * 180.02562 * 8 7 5 30 30 H 1.08005 * 119.99631 * 353.37329 * 15 13 4 31 31 H 1.07998 * 120.00333 * 170.90708 * 16 15 13 32 32 H 1.07993 * 126.97727 * 359.91950 * 18 17 16 33 33 H 1.07998 * 120.14887 * 359.96860 * 20 19 18 34 34 H 1.08002 * 119.77798 * 179.97438 * 21 20 19 35 35 H 1.07998 * 119.62333 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.06058 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1336 1.3640 0.2235 5 6 3.4828 1.7671 1.4820 6 1 4.1873 2.5749 1.6142 7 6 2.9306 1.1369 2.5925 8 7 2.1438 0.0975 2.4342 9 14 3.3085 1.7693 4.3093 10 1 2.8502 3.1765 4.4305 11 1 2.6040 0.9305 5.3119 12 1 4.7724 1.7030 4.5500 13 6 3.2379 2.2205 -0.8118 14 8 3.6438 3.3540 -0.6260 15 6 2.8758 1.8031 -2.1151 16 6 2.8518 2.6998 -3.1321 17 6 2.9991 4.0837 -2.8607 18 6 3.7418 4.9549 -3.6017 19 6 3.6007 6.2577 -2.9548 20 6 4.1024 7.5352 -3.2187 21 6 3.7717 8.5754 -2.3970 22 6 2.9420 8.3712 -1.3029 23 6 2.4376 7.1186 -1.0248 24 6 2.7592 6.0450 -1.8461 25 8 2.4231 4.7397 -1.8318 26 1 -1.0503 -0.0005 0.0001 27 1 3.0094 -0.3621 -0.9614 28 1 3.0096 -0.6502 0.7952 29 1 1.7585 -0.3416 3.2085 30 1 2.6186 0.7705 -2.2994 31 1 2.7206 2.3599 -4.1488 32 1 4.3180 4.7280 -4.4865 33 1 4.7487 7.6992 -4.0683 34 1 4.1590 9.5630 -2.5995 35 1 2.6894 9.2029 -0.6619 36 1 1.7934 6.9722 -0.1704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490962449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:47 Heat of formation + Delta-G solvation = 82.310851 kcal Electronic energy + Delta-G solvation = -22790.448173 eV Core-core repulsion = 19401.881253 eV Total energy + Delta-G solvation = -3388.566921 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.18169 -40.70567 -38.71498 -37.22407 -35.00787 -34.03384 -33.13347 -33.07817 -31.22888 -29.88331 -28.34865 -26.95871 -24.85685 -23.71514 -22.57932 -22.12351 -20.11378 -19.67445 -18.70992 -18.33653 -18.14608 -17.32469 -16.98721 -16.60645 -16.16405 -15.86383 -15.62175 -15.04416 -14.75827 -14.57160 -14.30380 -14.21400 -14.00280 -13.73377 -13.29097 -13.17493 -13.00628 -12.96473 -12.69174 -12.57024 -12.19369 -11.82849 -11.42534 -11.20232 -11.07771 -10.61185 -10.48551 -10.36028 -9.81453 -9.39417 -8.74072 -8.33875 -5.98986 -0.46542 0.39370 0.56748 1.34714 1.37405 1.44996 1.68956 2.03143 2.14282 2.25007 2.35037 2.60462 2.85261 3.12931 3.30832 3.59667 3.83716 3.87151 4.12259 4.17125 4.22093 4.26738 4.42047 4.51557 4.64679 4.71922 4.74828 4.97776 5.06809 5.13681 5.20478 5.36194 5.41721 5.42444 5.45453 5.53930 5.64657 5.91536 6.07002 6.43007 6.47109 7.08603 7.12635 7.37094 8.00052 8.58940 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.005036 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.766140 B = 5558.222269 C = 6625.878737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.149 4.149 3 C 0.224 3.776 4 N -0.442 5.442 5 C -0.334 4.334 6 H 0.070 0.930 7 C 0.003 3.997 8 N -0.874 5.874 9 Si 0.985 3.015 10 H -0.286 1.286 11 H -0.266 1.266 12 H -0.265 1.265 13 C 0.448 3.552 14 O -0.609 6.609 15 C -0.168 4.168 16 C -0.047 4.047 17 C 0.071 3.929 18 C -0.207 4.207 19 C -0.152 4.152 20 C -0.078 4.078 21 C -0.140 4.140 22 C -0.092 4.092 23 C -0.141 4.141 24 C 0.025 3.975 25 O -0.191 6.191 26 H 0.233 0.767 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.274 0.726 30 H 0.159 0.841 31 H 0.207 0.793 32 H 0.189 0.811 33 H 0.155 0.845 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 6.482 -11.606 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.150 4.150 3 C 0.102 3.898 4 N -0.159 5.159 5 C -0.462 4.462 6 H 0.088 0.912 7 C -0.200 4.200 8 N -0.512 5.512 9 Si 0.809 3.191 10 H -0.212 1.212 11 H -0.190 1.190 12 H -0.190 1.190 13 C 0.242 3.758 14 O -0.497 6.497 15 C -0.189 4.189 16 C -0.068 4.068 17 C 0.023 3.977 18 C -0.226 4.226 19 C -0.153 4.153 20 C -0.096 4.096 21 C -0.158 4.158 22 C -0.109 4.109 23 C -0.160 4.160 24 C -0.024 4.024 25 O -0.092 6.092 26 H 0.249 0.751 27 H 0.112 0.888 28 H 0.131 0.869 29 H 0.084 0.916 30 H 0.177 0.823 31 H 0.223 0.777 32 H 0.207 0.793 33 H 0.172 0.828 34 H 0.184 0.816 35 H 0.180 0.820 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.256 6.703 -11.111 12.979 hybrid contribution -0.201 -0.151 1.468 1.489 sum 0.055 6.552 -9.643 11.659 Atomic orbital electron populations 1.25190 0.96436 1.00598 1.05209 1.23597 0.95090 0.99757 0.96576 1.18641 0.84417 0.84875 1.01832 1.43825 1.54578 1.10565 1.06944 1.19492 1.25024 1.18820 0.82843 0.91159 1.26054 0.95008 0.95982 1.02960 1.69972 1.30231 1.19050 1.31909 0.85126 0.78894 0.77784 0.77304 1.21202 1.19048 1.19010 1.17742 0.85462 0.85364 0.87279 1.90697 1.52826 1.20465 1.85756 1.22632 1.01535 1.02461 0.92265 1.21207 0.97964 0.86556 1.01071 1.19909 0.97660 0.94199 0.85885 1.22939 1.05693 0.89939 1.04060 1.20294 1.01816 0.96220 0.96967 1.20727 0.98867 0.89417 1.00573 1.21166 0.99247 1.00353 0.95007 1.21303 0.96497 0.94962 0.98187 1.20279 1.04863 0.90944 0.99900 1.20329 0.99703 0.83653 0.98671 1.84275 1.60964 1.18962 1.44951 0.75075 0.88761 0.86889 0.91567 0.82318 0.77675 0.79336 0.82751 0.81613 0.81957 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.29 19.25 74.32 1.43 -8.86 16 2 C -0.15 -6.61 11.44 31.12 0.36 -6.26 16 3 C 0.22 10.01 4.79 84.57 0.41 10.42 16 4 N -0.44 -23.27 2.59 -655.59 -1.70 -24.97 16 5 C -0.33 -19.23 9.26 84.15 0.78 -18.45 16 6 H 0.07 4.37 7.42 -2.91 -0.02 4.35 16 7 C 0.00 0.15 5.36 84.98 0.46 0.61 16 8 N -0.87 -45.37 8.72 21.69 0.19 -45.18 16 9 Si 0.98 43.50 29.56 68.60 2.03 45.52 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 13 C 0.45 22.91 7.11 85.06 0.61 23.52 16 14 O -0.61 -35.73 12.20 18.91 0.23 -35.50 16 15 C -0.17 -6.44 8.97 22.48 0.20 -6.24 16 16 C -0.05 -1.55 9.91 22.54 0.22 -1.32 16 17 C 0.07 2.80 5.17 22.71 0.12 2.92 16 18 C -0.21 -6.97 11.05 23.89 0.26 -6.71 16 19 C -0.15 -5.42 6.38 -20.23 -0.13 -5.55 16 20 C -0.08 -2.10 10.06 22.26 0.22 -1.87 16 21 C -0.14 -3.26 9.98 22.03 0.22 -3.04 16 22 C -0.09 -2.44 10.01 22.32 0.22 -2.22 16 23 C -0.14 -5.13 10.07 22.35 0.23 -4.91 16 24 C 0.02 1.05 7.40 23.06 0.17 1.22 16 25 O -0.19 -9.15 7.82 9.90 0.08 -9.08 16 26 H 0.23 7.25 7.80 -4.40 -0.03 7.22 16 27 H 0.09 3.38 6.37 -2.39 -0.02 3.36 16 28 H 0.11 5.42 6.08 -2.38 -0.01 5.41 16 29 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 30 H 0.16 4.91 6.11 -2.91 -0.02 4.89 16 31 H 0.21 4.08 8.06 -2.91 -0.02 4.06 16 32 H 0.19 4.59 8.06 -2.91 -0.02 4.57 16 33 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 36 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -77.77 318.87 7.70 -70.07 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 1.11 Total: 25.90 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 5.77 Total: -26.75 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: -1.51 Total: -70.16 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: 0.31 Total: -44.58 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -77.77 7.70 -70.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.376 kcal (2) G-P(sol) polarization free energy of solvation -77.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds