Wall clock time and date at job start Tue Mar 31 2020 07:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46934 * 152.30571 * 3 2 1 5 5 C 1.36875 * 119.99442 * 70.99953 * 4 3 2 6 6 H 1.08001 * 120.00251 * 36.60802 * 5 4 3 7 7 C 1.39047 * 119.99731 * 216.60591 * 5 4 3 8 8 N 1.31366 * 119.99814 * 23.56723 * 7 5 4 9 9 Si 1.86801 * 120.00176 * 203.56941 * 7 5 4 10 10 H 1.48498 * 109.46902 * 64.99638 * 9 7 5 11 11 H 1.48493 * 109.47230 * 185.00366 * 9 7 5 12 12 H 1.48499 * 109.46693 * 304.99980 * 9 7 5 13 13 C 1.34772 * 120.00556 * 250.99674 * 4 3 2 14 14 O 1.21618 * 120.00443 * 181.94855 * 13 4 3 15 15 C 1.47473 * 119.99747 * 1.94575 * 13 4 3 16 16 C 1.38638 * 119.79307 * 38.71537 * 15 13 4 17 17 C 1.40184 * 119.51656 * 179.73522 * 16 15 13 18 18 C 1.40711 * 121.04012 * 180.24176 * 17 16 15 19 19 C 1.36070 * 119.67447 * 180.29103 * 18 17 16 20 20 C 1.39394 * 120.97331 * 0.02562 * 19 18 17 21 21 C 1.36107 * 121.02563 * 359.97438 * 20 19 18 22 22 C 1.40576 * 119.72150 * 0.02562 * 21 20 19 23 23 C 1.40487 * 120.97578 * 179.97438 * 22 21 20 24 24 C 1.36357 * 120.00159 * 180.02562 * 23 22 21 25 25 O 1.35738 * 119.65564 * 179.97438 * 24 23 22 26 26 H 4.40638 * 5.51395 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47494 * 32.31421 * 3 2 1 28 28 H 1.09001 * 109.47623 * 272.30817 * 3 2 1 29 29 H 0.97002 * 119.99670 * 184.90765 * 8 7 5 30 30 H 1.07996 * 120.24308 * 359.97438 * 16 15 13 31 31 H 1.07998 * 120.16455 * 0.27247 * 18 17 16 32 32 H 1.07995 * 119.50805 * 179.97438 * 19 18 17 33 33 H 1.07998 * 119.49171 * 180.02562 * 20 19 18 34 34 H 1.07993 * 120.14427 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.99986 * 0.04644 * 23 22 21 36 36 H 0.96697 * 114.00033 * 270.02128 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2239 -0.6420 5 6 2.9974 2.4299 -0.0091 6 1 3.1090 2.4927 1.0633 7 6 2.7151 3.5742 -0.7470 8 7 2.1342 3.4721 -1.9207 9 14 3.1621 5.2565 -0.0692 10 1 4.6387 5.3695 0.0407 11 1 2.6515 6.3099 -0.9828 12 1 2.5514 5.4273 1.2736 13 6 3.7167 1.1618 -1.8555 14 8 4.1534 2.1721 -2.3728 15 6 3.8251 -0.1313 -2.5561 16 6 2.7796 -1.0396 -2.4914 17 6 2.8865 -2.2648 -3.1641 18 6 1.8430 -3.2079 -3.1243 19 6 1.9787 -4.3910 -3.7826 20 6 3.1385 -4.6850 -4.4978 21 6 4.1688 -3.7978 -4.5591 22 6 4.0671 -2.5645 -3.8922 23 6 5.1147 -1.6295 -3.9375 24 6 4.9951 -0.4393 -3.2828 25 8 6.0118 0.4587 -3.3308 26 1 -1.0502 -0.0004 0.0000 27 1 3.0098 -0.8677 -0.5493 28 1 3.0094 -0.0406 1.0268 29 1 2.0017 4.2629 -2.4667 30 1 1.8878 -0.8034 -1.9300 31 1 0.9389 -2.9939 -2.5736 32 1 1.1763 -5.1130 -3.7499 33 1 3.2206 -5.6312 -5.0119 34 1 5.0607 -4.0402 -5.1177 35 1 6.0146 -1.8532 -4.4910 36 1 6.6608 0.3563 -2.6213 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490963200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:24 Heat of formation + Delta-G solvation = 56.451262 kcal Electronic energy + Delta-G solvation = -23174.767723 eV Core-core repulsion = 19785.079446 eV Total energy + Delta-G solvation = -3389.688277 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40799 -38.54239 -37.45352 -34.98795 -34.53150 -32.73149 -32.18253 -31.29159 -29.64843 -28.57630 -26.47879 -25.00244 -23.27363 -22.61040 -21.81316 -19.97191 -18.45536 -17.84277 -17.28515 -16.71948 -16.11551 -15.60318 -15.19718 -14.90017 -14.56783 -14.21058 -13.91078 -13.79482 -13.66857 -13.19433 -13.10312 -12.73307 -12.30234 -12.24203 -11.87076 -11.39745 -11.25576 -10.94259 -10.87099 -10.65290 -10.56852 -10.30682 -10.19951 -9.82566 -9.75306 -9.43645 -8.89215 -8.30966 -8.07547 -7.59826 -7.24894 -6.16790 -3.86664 0.64826 1.09923 2.19242 2.94993 3.32356 3.36053 3.39766 3.45974 3.48335 4.13169 4.32665 4.45034 4.58979 4.81448 4.83751 4.95964 5.05903 5.14610 5.30078 5.35242 5.38608 5.51963 5.57968 5.73860 5.90278 5.97337 6.10035 6.17804 6.20962 6.35107 6.36900 6.55208 6.57641 6.70313 6.77287 6.96152 7.08818 7.54107 8.07491 8.14985 8.29850 8.92318 9.08761 9.54262 10.19281 10.89790 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020270 B = 0.005494 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.053063 B = 5095.107810 C = 6105.811233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.167 4.167 3 C 0.187 3.813 4 N -0.438 5.438 5 C -0.344 4.344 6 H 0.085 0.915 7 C 0.071 3.929 8 N -0.810 5.810 9 Si 0.910 3.090 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.499 3.501 14 O -0.505 6.505 15 C -0.113 4.113 16 C -0.085 4.085 17 C -0.062 4.062 18 C -0.094 4.094 19 C -0.130 4.130 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.034 4.034 23 C -0.156 4.156 24 C 0.156 3.844 25 O -0.479 6.479 26 H 0.209 0.791 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.267 0.733 30 H 0.144 0.856 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.542 -15.487 -1.053 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.168 4.168 3 C 0.064 3.936 4 N -0.159 5.159 5 C -0.470 4.470 6 H 0.102 0.898 7 C -0.141 4.141 8 N -0.443 5.443 9 Si 0.736 3.264 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.287 3.713 14 O -0.381 6.381 15 C -0.118 4.118 16 C -0.104 4.104 17 C -0.062 4.062 18 C -0.112 4.112 19 C -0.148 4.148 20 C -0.137 4.137 21 C -0.129 4.129 22 C -0.035 4.035 23 C -0.174 4.174 24 C 0.111 3.889 25 O -0.288 6.288 26 H 0.226 0.774 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.161 0.839 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.388 -14.594 -1.954 14.789 hybrid contribution -0.009 0.692 0.555 0.887 sum 1.378 -13.902 -1.399 14.040 Atomic orbital electron populations 1.24653 0.95667 1.01799 1.02022 1.23699 0.94976 0.99001 0.99161 1.19007 0.83715 0.91368 0.99480 1.43305 1.50207 1.05095 1.17297 1.19017 1.51371 0.83669 0.92949 0.89762 1.25117 0.93547 0.99513 0.95922 1.69917 1.32029 1.31140 1.11237 0.86305 0.79335 0.82508 0.78202 1.19939 1.21211 1.20268 1.17501 0.83549 0.86869 0.83415 1.90668 1.48157 1.34820 1.64444 1.20991 0.94987 0.96694 0.99104 1.21874 0.98850 0.91842 0.97803 1.18080 0.94351 0.95044 0.98751 1.21087 0.97870 0.93359 0.98914 1.20754 0.98002 0.97269 0.98775 1.20777 0.93878 0.99406 0.99643 1.20957 0.99170 0.93208 0.99521 1.17900 0.93518 0.94495 0.97578 1.21064 0.99789 0.93069 1.03518 1.18061 0.88377 0.87566 0.94939 1.84854 1.36027 1.54718 1.53229 0.77407 0.88723 0.90343 0.92247 0.83867 0.85591 0.86281 0.86368 0.85871 0.85067 0.75739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.02 19.25 29.55 0.57 -3.45 16 2 C -0.17 -3.34 11.49 -37.13 -0.43 -3.76 16 3 C 0.19 3.73 5.40 -6.83 -0.04 3.70 16 4 N -0.44 -10.95 2.61 -119.14 -0.31 -11.26 16 5 C -0.34 -9.40 9.04 -15.00 -0.14 -9.53 16 6 H 0.08 2.19 7.94 -52.49 -0.42 1.77 16 7 C 0.07 2.02 4.21 -17.45 -0.07 1.95 16 8 N -0.81 -24.44 11.48 55.50 0.64 -23.80 16 9 Si 0.91 22.00 29.62 -169.99 -5.03 16.96 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.50 12.94 6.43 -12.50 -0.08 12.86 16 14 O -0.50 -15.20 13.37 -11.65 -0.16 -15.36 16 15 C -0.11 -2.42 5.23 -104.89 -0.55 -2.97 16 16 C -0.08 -1.60 7.05 -38.70 -0.27 -1.87 16 17 C -0.06 -1.01 5.74 -106.83 -0.61 -1.63 16 18 C -0.09 -1.28 9.76 -39.43 -0.38 -1.67 16 19 C -0.13 -1.50 9.95 -39.93 -0.40 -1.90 16 20 C -0.12 -1.32 9.95 -39.92 -0.40 -1.72 16 21 C -0.11 -1.36 9.76 -39.47 -0.38 -1.75 16 22 C -0.03 -0.53 5.75 -106.76 -0.61 -1.14 16 23 C -0.16 -2.46 9.64 -39.41 -0.38 -2.84 16 24 C 0.16 2.97 6.62 -39.16 -0.26 2.71 16 25 O -0.48 -9.07 12.16 -35.84 -0.44 -9.51 16 26 H 0.21 2.91 7.80 -54.08 -0.42 2.49 16 27 H 0.10 1.69 4.52 -51.93 -0.23 1.45 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 29 H 0.27 7.80 8.31 -40.82 -0.34 7.46 16 30 H 0.14 2.77 4.69 -52.49 -0.25 2.52 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.39 5.39 9.06 45.56 0.41 5.80 16 LS Contribution 316.57 15.07 4.77 4.77 Total: -1.00 -35.58 316.57 -7.54 -43.12 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -2.58 Total: 8.08 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -4.44 Total: -13.00 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.33 Total: -35.07 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.59 Total: -24.87 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.58 -7.54 -43.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490963200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.575 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds