Wall clock time and date at job start Tue Mar 31 2020 07:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46934 * 152.30571 * 3 2 1 5 5 C 1.36875 * 119.99442 * 70.99953 * 4 3 2 6 6 H 1.08001 * 120.00251 * 36.60802 * 5 4 3 7 7 C 1.39047 * 119.99731 * 216.60591 * 5 4 3 8 8 N 1.31366 * 119.99814 * 23.56723 * 7 5 4 9 9 Si 1.86801 * 120.00176 * 203.56941 * 7 5 4 10 10 H 1.48498 * 109.46902 * 64.99638 * 9 7 5 11 11 H 1.48493 * 109.47230 * 185.00366 * 9 7 5 12 12 H 1.48499 * 109.46693 * 304.99980 * 9 7 5 13 13 C 1.34772 * 120.00556 * 250.99674 * 4 3 2 14 14 O 1.21618 * 120.00443 * 181.94855 * 13 4 3 15 15 C 1.47473 * 119.99747 * 1.94575 * 13 4 3 16 16 C 1.38638 * 119.79307 * 38.71537 * 15 13 4 17 17 C 1.40184 * 119.51656 * 179.73522 * 16 15 13 18 18 C 1.40711 * 121.04012 * 180.24176 * 17 16 15 19 19 C 1.36070 * 119.67447 * 180.29103 * 18 17 16 20 20 C 1.39394 * 120.97331 * 0.02562 * 19 18 17 21 21 C 1.36107 * 121.02563 * 359.97438 * 20 19 18 22 22 C 1.40576 * 119.72150 * 0.02562 * 21 20 19 23 23 C 1.40487 * 120.97578 * 179.97438 * 22 21 20 24 24 C 1.36357 * 120.00159 * 180.02562 * 23 22 21 25 25 O 1.35738 * 119.65564 * 179.97438 * 24 23 22 26 26 H 4.40638 * 5.51395 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47494 * 32.31421 * 3 2 1 28 28 H 1.09001 * 109.47623 * 272.30817 * 3 2 1 29 29 H 0.97002 * 119.99670 * 184.90765 * 8 7 5 30 30 H 1.07996 * 120.24308 * 359.97438 * 16 15 13 31 31 H 1.07998 * 120.16455 * 0.27247 * 18 17 16 32 32 H 1.07995 * 119.50805 * 179.97438 * 19 18 17 33 33 H 1.07998 * 119.49171 * 180.02562 * 20 19 18 34 34 H 1.07993 * 120.14427 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.99986 * 0.04644 * 23 22 21 36 36 H 0.96697 * 114.00033 * 270.02128 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2239 -0.6420 5 6 2.9974 2.4299 -0.0091 6 1 3.1090 2.4927 1.0633 7 6 2.7151 3.5742 -0.7470 8 7 2.1342 3.4721 -1.9207 9 14 3.1621 5.2565 -0.0692 10 1 4.6387 5.3695 0.0407 11 1 2.6515 6.3099 -0.9828 12 1 2.5514 5.4273 1.2736 13 6 3.7167 1.1618 -1.8555 14 8 4.1534 2.1721 -2.3728 15 6 3.8251 -0.1313 -2.5561 16 6 2.7796 -1.0396 -2.4914 17 6 2.8865 -2.2648 -3.1641 18 6 1.8430 -3.2079 -3.1243 19 6 1.9787 -4.3910 -3.7826 20 6 3.1385 -4.6850 -4.4978 21 6 4.1688 -3.7978 -4.5591 22 6 4.0671 -2.5645 -3.8922 23 6 5.1147 -1.6295 -3.9375 24 6 4.9951 -0.4393 -3.2828 25 8 6.0118 0.4587 -3.3308 26 1 -1.0502 -0.0004 0.0000 27 1 3.0098 -0.8677 -0.5493 28 1 3.0094 -0.0406 1.0268 29 1 2.0017 4.2629 -2.4667 30 1 1.8878 -0.8034 -1.9300 31 1 0.9389 -2.9939 -2.5736 32 1 1.1763 -5.1130 -3.7499 33 1 3.2206 -5.6312 -5.0119 34 1 5.0607 -4.0402 -5.1177 35 1 6.0146 -1.8532 -4.4910 36 1 6.6608 0.3563 -2.6213 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490963200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:23 Heat of formation + Delta-G solvation = 33.395303 kcal Electronic energy + Delta-G solvation = -23175.767504 eV Core-core repulsion = 19785.079446 eV Total energy + Delta-G solvation = -3390.688058 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.100 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74424 -40.10725 -38.87922 -36.65664 -36.03079 -34.46176 -33.48285 -33.03309 -30.98444 -29.76435 -28.19158 -26.78206 -24.68087 -23.90550 -22.97780 -21.67008 -19.76366 -19.42224 -18.97395 -17.90223 -17.76318 -17.00853 -16.76421 -16.50404 -16.02506 -15.80895 -15.40137 -15.29133 -14.88482 -14.59133 -14.27809 -14.13233 -13.97458 -13.83317 -13.45881 -13.08878 -12.82699 -12.66667 -12.35346 -12.22769 -12.01976 -11.81916 -11.61183 -11.31822 -11.14118 -10.89419 -10.76935 -10.18913 -9.44126 -9.27773 -8.77454 -8.26600 -5.99696 -0.54054 -0.11732 1.03728 1.35918 1.45152 1.48428 1.69202 1.89863 1.97348 2.37622 2.59778 3.06280 3.11172 3.26978 3.29827 3.64312 3.74164 3.93029 4.02064 4.12773 4.28495 4.31101 4.41401 4.43323 4.54599 4.65300 4.81399 4.91836 4.99766 5.14019 5.19470 5.24810 5.37285 5.42710 5.60688 5.62332 5.75804 6.06380 6.08794 6.80363 6.84405 6.91667 7.12046 7.54882 8.24730 8.80425 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020270 B = 0.005494 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.053063 B = 5095.107810 C = 6105.811233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.215 4.215 3 C 0.189 3.811 4 N -0.452 5.452 5 C -0.361 4.361 6 H 0.090 0.910 7 C 0.022 3.978 8 N -0.856 5.856 9 Si 0.969 3.031 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.254 1.254 13 C 0.495 3.505 14 O -0.562 6.562 15 C -0.151 4.151 16 C -0.079 4.079 17 C -0.078 4.078 18 C -0.113 4.113 19 C -0.114 4.114 20 C -0.105 4.105 21 C -0.114 4.114 22 C -0.044 4.044 23 C -0.135 4.135 24 C 0.128 3.872 25 O -0.499 6.499 26 H 0.247 0.753 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.258 0.742 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 -19.406 -1.700 19.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.216 4.216 3 C 0.067 3.933 4 N -0.173 5.173 5 C -0.488 4.488 6 H 0.108 0.892 7 C -0.186 4.186 8 N -0.491 5.491 9 Si 0.794 3.206 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.178 1.178 13 C 0.285 3.715 14 O -0.442 6.442 15 C -0.155 4.155 16 C -0.098 4.098 17 C -0.078 4.078 18 C -0.131 4.131 19 C -0.132 4.132 20 C -0.123 4.123 21 C -0.131 4.131 22 C -0.044 4.044 23 C -0.153 4.153 24 C 0.082 3.918 25 O -0.311 6.311 26 H 0.263 0.737 27 H 0.129 0.871 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.172 0.828 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.180 0.820 36 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 0.806 -18.556 -2.548 18.747 hybrid contribution 0.108 1.520 0.685 1.670 sum 0.914 -17.036 -1.863 17.162 Atomic orbital electron populations 1.25575 0.96606 0.99528 0.99988 1.23881 0.95589 1.01043 1.01086 1.19100 0.84371 0.89887 0.99956 1.43461 1.50514 1.05983 1.17321 1.19327 1.51013 0.85059 0.93371 0.89246 1.25984 0.93404 1.03034 0.96136 1.70040 1.34765 1.31305 1.13012 0.85384 0.78504 0.78267 0.78470 1.20597 1.21517 1.17785 1.18237 0.81967 0.87966 0.83343 1.90598 1.50355 1.37289 1.65965 1.20740 0.97572 0.95501 1.01686 1.21796 0.97619 0.92570 0.97799 1.18255 0.95981 0.94528 0.99044 1.21264 0.97642 0.93926 1.00240 1.21245 0.99006 0.96529 0.96386 1.21322 0.92622 1.00383 0.97960 1.21319 1.00970 0.91772 0.99077 1.18231 0.92796 0.95749 0.97632 1.21333 1.00907 0.91465 1.01644 1.18199 0.87908 0.89040 0.96632 1.84810 1.36508 1.55678 1.54103 0.73707 0.87063 0.88927 0.93239 0.84990 0.84778 0.82796 0.82305 0.82775 0.81998 0.74203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.00 19.25 74.32 1.43 -5.57 16 2 C -0.21 -8.69 11.49 31.12 0.36 -8.33 16 3 C 0.19 7.80 5.40 84.57 0.46 8.25 16 4 N -0.45 -23.80 2.61 -649.11 -1.69 -25.49 16 5 C -0.36 -20.59 9.04 84.10 0.76 -19.83 16 6 H 0.09 4.81 7.94 -2.91 -0.02 4.79 16 7 C 0.02 1.29 4.21 84.96 0.36 1.65 16 8 N -0.86 -54.60 11.48 21.68 0.25 -54.35 16 9 Si 0.97 47.05 29.62 68.60 2.03 49.08 16 10 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 12 H -0.25 -11.19 7.11 99.48 0.71 -10.48 16 13 C 0.50 27.33 6.43 86.68 0.56 27.89 16 14 O -0.56 -36.23 13.37 12.09 0.16 -36.07 16 15 C -0.15 -6.77 5.23 -20.04 -0.10 -6.88 16 16 C -0.08 -3.05 7.05 22.84 0.16 -2.89 16 17 C -0.08 -2.44 5.74 -21.29 -0.12 -2.56 16 18 C -0.11 -2.75 9.76 22.37 0.22 -2.53 16 19 C -0.11 -2.03 9.95 22.04 0.22 -1.82 16 20 C -0.11 -1.69 9.95 22.05 0.22 -1.47 16 21 C -0.11 -2.24 9.76 22.34 0.22 -2.02 16 22 C -0.04 -1.23 5.75 -21.25 -0.12 -1.35 16 23 C -0.14 -4.08 9.64 22.38 0.22 -3.87 16 24 C 0.13 5.00 6.62 22.54 0.15 5.15 16 25 O -0.50 -19.92 12.16 -74.44 -0.90 -20.82 16 26 H 0.25 6.24 7.80 -4.41 -0.03 6.21 16 27 H 0.11 4.13 4.52 -2.39 -0.01 4.12 16 28 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 29 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 30 H 0.13 5.29 4.69 -2.91 -0.01 5.28 16 31 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 32 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 34 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 36 H 0.40 12.03 9.06 -74.06 -0.67 11.36 16 Total: -1.00 -83.60 316.57 5.28 -78.32 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.46 Total: 25.51 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 4.97 Total: -16.17 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -1.44 Total: -79.84 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -0.74 Total: -56.89 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -83.60 5.28 -78.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490963200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.717 kcal (2) G-P(sol) polarization free energy of solvation -83.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds