Wall clock time and date at job start Tue Mar 31 2020 07:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47250 * 126.10659 * 3 2 1 5 5 C 1.36854 * 119.99933 * 278.00713 * 4 3 2 6 6 H 1.07994 * 120.00116 * 287.90998 * 5 4 3 7 7 C 1.39055 * 119.99626 * 107.91793 * 5 4 3 8 8 N 1.31357 * 120.00360 * 64.02019 * 7 5 4 9 9 Si 1.86807 * 119.99576 * 244.02272 * 7 5 4 10 10 H 1.48498 * 109.46921 * 60.00081 * 9 7 5 11 11 H 1.48500 * 109.46739 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47023 * 300.00171 * 9 7 5 13 13 C 1.34781 * 119.99783 * 98.00430 * 4 3 2 14 14 O 1.21604 * 119.99659 * 192.72617 * 13 4 3 15 15 C 1.47674 * 119.99926 * 12.73526 * 13 4 3 16 16 C 1.40602 * 119.72224 * 321.27802 * 15 13 4 17 17 C 1.36243 * 120.77346 * 180.02562 * 16 15 13 18 18 O 1.35831 * 120.04508 * 179.97438 * 17 16 15 19 19 C 1.41154 * 119.92060 * 0.02562 * 17 16 15 20 20 C 1.40358 * 121.04654 * 179.97438 * 19 17 16 21 21 C 1.36187 * 119.73625 * 180.02562 * 20 19 17 22 22 C 1.39346 * 120.99889 * 359.97438 * 21 20 19 23 23 C 1.36105 * 120.93441 * 359.97438 * 22 21 20 24 24 C 1.40676 * 119.65963 * 359.76011 * 23 22 21 25 25 C 1.38589 * 119.72538 * 141.26395 * 15 13 4 26 26 H 4.40646 * 5.51473 * 180.02562 * 4 1 2 27 27 H 1.08997 * 109.47007 * 6.10435 * 3 2 1 28 28 H 1.09006 * 109.46894 * 246.11075 * 3 2 1 29 29 H 0.97000 * 120.00001 * 179.97438 * 8 7 5 30 30 H 1.08001 * 119.61439 * 359.97438 * 16 15 13 31 31 H 0.96705 * 113.99392 * 89.99764 * 18 17 16 32 32 H 1.08002 * 120.12812 * 359.97438 * 20 19 17 33 33 H 1.07997 * 119.50376 * 180.02562 * 21 20 19 34 34 H 1.07998 * 119.53351 * 180.02562 * 22 21 20 35 35 H 1.07997 * 120.17003 * 180.02562 * 23 22 21 36 36 H 1.08007 * 120.22057 * 359.97149 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.8148 -1.1159 5 6 3.2066 0.2792 -2.3732 6 1 3.9645 -0.4546 -2.6046 7 6 2.3047 0.6800 -3.3528 8 7 2.2998 1.9251 -3.7712 9 14 1.1001 -0.5525 -4.0737 10 1 0.2383 -1.0930 -2.9919 11 1 0.2532 0.1203 -5.0912 12 1 1.8510 -1.6642 -4.7104 13 6 3.5113 2.0913 -0.9042 14 8 3.6939 2.8357 -1.8483 15 6 3.7030 2.5857 0.4740 16 6 2.8238 2.1739 1.4910 17 6 2.9805 2.6171 2.7697 18 8 2.1221 2.2102 3.7406 19 6 4.0353 3.5007 3.0843 20 6 4.2184 3.9725 4.3935 21 6 5.2448 4.8247 4.6671 22 6 6.1209 5.2380 3.6654 23 6 5.9756 4.8009 2.3846 24 6 4.9301 3.9153 2.0657 25 6 4.7482 3.4515 0.7543 26 1 -1.0502 0.0000 0.0003 27 1 3.0097 -1.0210 -0.1093 28 1 3.0091 0.4170 0.9397 29 1 1.6709 2.2046 -4.4548 30 1 2.0142 1.4989 1.2556 31 1 2.3979 1.4031 4.1963 32 1 3.5474 3.6615 5.1805 33 1 5.3824 5.1850 5.6758 34 1 6.9271 5.9141 3.9089 35 1 6.6620 5.1288 1.6180 36 1 5.4209 3.7639 -0.0309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490984526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:27 Heat of formation + Delta-G solvation = 71.850457 kcal Electronic energy + Delta-G solvation = -22904.467326 eV Core-core repulsion = 19515.446809 eV Total energy + Delta-G solvation = -3389.020517 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.56738 -38.53874 -37.57845 -35.31208 -34.92299 -32.77313 -31.73606 -31.48524 -30.26470 -28.55529 -26.52556 -25.15695 -23.25609 -22.93605 -21.69022 -19.97419 -18.18525 -17.77458 -17.55241 -16.86078 -16.48296 -15.82403 -15.25556 -14.83822 -14.63788 -14.44833 -14.14414 -14.00360 -13.49616 -13.43167 -13.10686 -12.71830 -12.45805 -12.07879 -11.93058 -11.78102 -11.40121 -11.31667 -10.97431 -10.72586 -10.60574 -10.37343 -10.26264 -9.81264 -9.71189 -9.47791 -8.60934 -8.34224 -7.99926 -7.60951 -7.23439 -6.55057 -3.92415 0.58112 1.02706 2.08517 2.89880 3.22540 3.36458 3.40536 3.45340 3.46394 3.95188 4.25057 4.27934 4.42111 4.61875 4.74382 4.87691 4.94725 5.00050 5.13750 5.30645 5.41255 5.41835 5.55810 5.75235 5.80351 6.00013 6.02963 6.13859 6.24592 6.34816 6.35992 6.50119 6.57477 6.62056 6.78429 6.85689 7.01396 7.45986 7.71363 8.26202 8.43745 8.96641 9.13828 9.42571 10.20772 10.38668 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.004877 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.114848 B = 5739.742558 C = 6639.634542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.170 4.170 3 C 0.181 3.819 4 N -0.443 5.443 5 C -0.454 4.454 6 H 0.084 0.916 7 C 0.144 3.856 8 N -0.698 5.698 9 Si 0.811 3.189 10 H -0.265 1.265 11 H -0.290 1.290 12 H -0.269 1.269 13 C 0.508 3.492 14 O -0.490 6.490 15 C -0.090 4.090 16 C -0.133 4.133 17 C 0.101 3.899 18 O -0.492 6.492 19 C -0.071 4.071 20 C -0.100 4.100 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.100 4.100 24 C -0.042 4.042 25 C -0.073 4.073 26 H 0.208 0.792 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.265 0.735 30 H 0.152 0.848 31 H 0.385 0.615 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 1.840 15.909 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.171 4.171 3 C 0.059 3.941 4 N -0.167 5.167 5 C -0.574 4.574 6 H 0.102 0.898 7 C -0.083 4.083 8 N -0.318 5.318 9 Si 0.632 3.368 10 H -0.190 1.190 11 H -0.216 1.216 12 H -0.194 1.194 13 C 0.294 3.706 14 O -0.365 6.365 15 C -0.094 4.094 16 C -0.151 4.151 17 C 0.056 3.944 18 O -0.301 6.301 19 C -0.071 4.071 20 C -0.118 4.118 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.118 4.118 24 C -0.042 4.042 25 C -0.092 4.092 26 H 0.225 0.775 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.169 0.831 31 H 0.241 0.759 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.306 2.986 15.089 15.733 hybrid contribution -0.985 -1.119 -0.268 1.515 sum 2.321 1.867 14.822 15.118 Atomic orbital electron populations 1.24705 0.95778 1.02265 1.02039 1.24014 0.95297 0.98954 0.98856 1.19437 0.82995 0.98456 0.93202 1.42817 1.57955 1.08840 1.07049 1.18009 1.21603 1.31214 0.86569 0.89848 1.25647 0.95370 0.93330 0.93944 1.71070 1.24569 1.19988 1.16220 0.87860 0.83765 0.86202 0.78955 1.18978 1.21631 1.19369 1.18923 0.80342 0.84976 0.86319 1.90802 1.49554 1.53725 1.42371 1.20684 0.95444 0.97173 0.96058 1.21971 1.00712 1.00218 0.92234 1.17970 0.90677 0.97392 0.88345 1.84814 1.47111 1.47205 1.50995 1.18376 0.95187 0.99415 0.94146 1.20900 0.97860 0.97597 0.95393 1.20808 0.95622 0.98571 0.99243 1.20809 0.99572 1.00476 0.93146 1.21085 0.97048 0.96701 0.96995 1.17954 0.95478 0.97807 0.92945 1.21398 0.97669 0.95208 0.94933 0.77524 0.89630 0.88686 0.92415 0.83061 0.75909 0.85501 0.86260 0.86128 0.85287 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.31 19.25 29.55 0.57 -3.74 16 2 C -0.17 -3.46 11.79 -37.12 -0.44 -3.90 16 3 C 0.18 3.64 5.40 -6.83 -0.04 3.60 16 4 N -0.44 -11.02 2.50 -119.08 -0.30 -11.32 16 5 C -0.45 -12.51 8.46 -15.01 -0.13 -12.63 16 6 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 7 C 0.14 3.97 5.33 -17.45 -0.09 3.88 16 8 N -0.70 -20.20 11.77 55.50 0.65 -19.54 16 9 Si 0.81 19.56 29.69 -169.99 -5.05 14.52 16 10 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.51 12.83 7.20 -12.41 -0.09 12.74 16 14 O -0.49 -14.37 14.76 5.27 0.08 -14.30 16 15 C -0.09 -1.83 5.47 -105.02 -0.57 -2.41 16 16 C -0.13 -2.39 7.23 -39.41 -0.28 -2.68 16 17 C 0.10 1.57 6.66 -39.19 -0.26 1.31 16 18 O -0.49 -6.39 12.68 -19.21 -0.24 -6.64 16 19 C -0.07 -1.07 5.76 -106.64 -0.61 -1.68 16 20 C -0.10 -1.24 9.55 -39.52 -0.38 -1.62 16 21 C -0.12 -1.36 9.95 -39.91 -0.40 -1.76 16 22 C -0.12 -1.35 9.95 -39.94 -0.40 -1.75 16 23 C -0.10 -1.30 9.77 -39.43 -0.39 -1.68 16 24 C -0.04 -0.65 5.74 -106.86 -0.61 -1.27 16 25 C -0.07 -1.33 9.35 -38.68 -0.36 -1.69 16 26 H 0.21 3.10 7.80 -54.08 -0.42 2.67 16 27 H 0.09 1.59 8.10 -51.93 -0.42 1.17 16 28 H 0.10 1.65 4.05 -51.93 -0.21 1.44 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.15 2.78 3.90 -52.49 -0.20 2.57 16 31 H 0.39 3.04 9.06 45.56 0.41 3.45 16 32 H 0.13 1.35 7.59 -52.49 -0.40 0.95 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.14 2.45 8.03 -52.48 -0.42 2.03 16 LS Contribution 318.65 15.07 4.80 4.80 Total: -1.00 -34.22 318.65 -7.03 -41.24 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -2.49 Total: 6.51 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -4.48 Total: -15.27 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.36 Total: -30.86 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.17 Total: -20.93 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.05 Total: 14.52 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.22 -7.03 -41.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.092 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds