Wall clock time and date at job start Tue Mar 31 2020 07:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47250 * 126.10659 * 3 2 1 5 5 C 1.36854 * 119.99933 * 278.00713 * 4 3 2 6 6 H 1.07994 * 120.00116 * 287.90998 * 5 4 3 7 7 C 1.39055 * 119.99626 * 107.91793 * 5 4 3 8 8 N 1.31357 * 120.00360 * 64.02019 * 7 5 4 9 9 Si 1.86807 * 119.99576 * 244.02272 * 7 5 4 10 10 H 1.48498 * 109.46921 * 60.00081 * 9 7 5 11 11 H 1.48500 * 109.46739 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47023 * 300.00171 * 9 7 5 13 13 C 1.34781 * 119.99783 * 98.00430 * 4 3 2 14 14 O 1.21604 * 119.99659 * 192.72617 * 13 4 3 15 15 C 1.47674 * 119.99926 * 12.73526 * 13 4 3 16 16 C 1.40602 * 119.72224 * 321.27802 * 15 13 4 17 17 C 1.36243 * 120.77346 * 180.02562 * 16 15 13 18 18 O 1.35831 * 120.04508 * 179.97438 * 17 16 15 19 19 C 1.41154 * 119.92060 * 0.02562 * 17 16 15 20 20 C 1.40358 * 121.04654 * 179.97438 * 19 17 16 21 21 C 1.36187 * 119.73625 * 180.02562 * 20 19 17 22 22 C 1.39346 * 120.99889 * 359.97438 * 21 20 19 23 23 C 1.36105 * 120.93441 * 359.97438 * 22 21 20 24 24 C 1.40676 * 119.65963 * 359.76011 * 23 22 21 25 25 C 1.38589 * 119.72538 * 141.26395 * 15 13 4 26 26 H 4.40646 * 5.51473 * 180.02562 * 4 1 2 27 27 H 1.08997 * 109.47007 * 6.10435 * 3 2 1 28 28 H 1.09006 * 109.46894 * 246.11075 * 3 2 1 29 29 H 0.97000 * 120.00001 * 179.97438 * 8 7 5 30 30 H 1.08001 * 119.61439 * 359.97438 * 16 15 13 31 31 H 0.96705 * 113.99392 * 89.99764 * 18 17 16 32 32 H 1.08002 * 120.12812 * 359.97438 * 20 19 17 33 33 H 1.07997 * 119.50376 * 180.02562 * 21 20 19 34 34 H 1.07998 * 119.53351 * 180.02562 * 22 21 20 35 35 H 1.07997 * 120.17003 * 180.02562 * 23 22 21 36 36 H 1.08007 * 120.22057 * 359.97149 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.8148 -1.1159 5 6 3.2066 0.2792 -2.3732 6 1 3.9645 -0.4546 -2.6046 7 6 2.3047 0.6800 -3.3528 8 7 2.2998 1.9251 -3.7712 9 14 1.1001 -0.5525 -4.0737 10 1 0.2383 -1.0930 -2.9919 11 1 0.2532 0.1203 -5.0912 12 1 1.8510 -1.6642 -4.7104 13 6 3.5113 2.0913 -0.9042 14 8 3.6939 2.8357 -1.8483 15 6 3.7030 2.5857 0.4740 16 6 2.8238 2.1739 1.4910 17 6 2.9805 2.6171 2.7697 18 8 2.1221 2.2102 3.7406 19 6 4.0353 3.5007 3.0843 20 6 4.2184 3.9725 4.3935 21 6 5.2448 4.8247 4.6671 22 6 6.1209 5.2380 3.6654 23 6 5.9756 4.8009 2.3846 24 6 4.9301 3.9153 2.0657 25 6 4.7482 3.4515 0.7543 26 1 -1.0502 0.0000 0.0003 27 1 3.0097 -1.0210 -0.1093 28 1 3.0091 0.4170 0.9397 29 1 1.6709 2.2046 -4.4548 30 1 2.0142 1.4989 1.2556 31 1 2.3979 1.4031 4.1963 32 1 3.5474 3.6615 5.1805 33 1 5.3824 5.1850 5.6758 34 1 6.9271 5.9141 3.9089 35 1 6.6620 5.1288 1.6180 36 1 5.4209 3.7639 -0.0309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490984526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:26 Heat of formation + Delta-G solvation = 49.475528 kcal Electronic energy + Delta-G solvation = -22905.437576 eV Core-core repulsion = 19515.446809 eV Total energy + Delta-G solvation = -3389.990767 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.100 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.80829 -40.18337 -38.65487 -36.76183 -36.61731 -34.68854 -33.20732 -32.78597 -31.52021 -29.77766 -28.21736 -26.89002 -24.64247 -24.17132 -22.80332 -21.59095 -19.60099 -19.42193 -18.63127 -18.47950 -17.75385 -17.27992 -16.71809 -16.54807 -16.06392 -15.85038 -15.73193 -15.35055 -14.85496 -14.62894 -14.35592 -14.23429 -14.06939 -13.95508 -13.50173 -13.24286 -12.87750 -12.59951 -12.49598 -12.18205 -12.06233 -11.94944 -11.63114 -11.35652 -11.07015 -10.73395 -10.57965 -10.02464 -9.57272 -9.23554 -8.77102 -8.57445 -6.01614 -0.56917 -0.15492 0.97502 1.29676 1.41707 1.48816 1.63585 1.84971 1.94504 2.31185 2.47229 2.58995 3.01315 3.11920 3.24286 3.66502 3.72338 3.91402 3.95432 4.11746 4.16486 4.34395 4.40918 4.49588 4.57838 4.71554 4.76733 4.87103 5.02769 5.13362 5.18280 5.21914 5.34510 5.40064 5.57364 5.59972 5.69433 6.02261 6.33269 6.75308 6.80050 7.05654 7.08613 7.48867 8.25762 8.36887 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.004877 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.114848 B = 5739.742558 C = 6639.634542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.211 4.211 3 C 0.184 3.816 4 N -0.453 5.453 5 C -0.486 4.486 6 H 0.068 0.932 7 C 0.106 3.894 8 N -0.746 5.746 9 Si 0.888 3.112 10 H -0.260 1.260 11 H -0.286 1.286 12 H -0.261 1.261 13 C 0.494 3.506 14 O -0.552 6.552 15 C -0.115 4.115 16 C -0.157 4.157 17 C 0.126 3.874 18 O -0.491 6.491 19 C -0.082 4.082 20 C -0.106 4.106 21 C -0.111 4.111 22 C -0.106 4.106 23 C -0.118 4.118 24 C -0.054 4.054 25 C -0.079 4.079 26 H 0.244 0.756 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.268 0.732 30 H 0.145 0.855 31 H 0.412 0.588 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.141 0.859 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 2.044 19.775 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.212 4.212 3 C 0.063 3.937 4 N -0.176 5.176 5 C -0.606 4.606 6 H 0.086 0.914 7 C -0.119 4.119 8 N -0.368 5.368 9 Si 0.709 3.291 10 H -0.185 1.185 11 H -0.212 1.212 12 H -0.185 1.185 13 C 0.284 3.716 14 O -0.431 6.431 15 C -0.119 4.119 16 C -0.175 4.175 17 C 0.081 3.919 18 O -0.304 6.304 19 C -0.083 4.083 20 C -0.123 4.123 21 C -0.128 4.128 22 C -0.124 4.124 23 C -0.136 4.136 24 C -0.054 4.054 25 C -0.098 4.098 26 H 0.260 0.740 27 H 0.113 0.887 28 H 0.139 0.861 29 H 0.079 0.921 30 H 0.163 0.837 31 H 0.272 0.728 32 H 0.168 0.832 33 H 0.177 0.823 34 H 0.175 0.825 35 H 0.158 0.842 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.760 3.120 18.987 19.439 hybrid contribution -0.694 -1.049 -1.203 1.740 sum 2.067 2.072 17.784 18.023 Atomic orbital electron populations 1.25595 0.96719 1.00459 1.00133 1.24171 0.95849 1.00623 1.00566 1.19484 0.83549 0.98159 0.92506 1.43061 1.57851 1.09138 1.07513 1.18104 1.22776 1.31168 0.88533 0.91442 1.26371 0.96558 0.94689 0.94247 1.71138 1.25675 1.22393 1.17566 0.86680 0.81081 0.83199 0.78165 1.18490 1.21210 1.18514 1.19646 0.79042 0.84989 0.87961 1.90732 1.52177 1.55352 1.44841 1.20217 0.97957 0.99731 0.93997 1.21739 1.00893 1.01999 0.92898 1.17881 0.90073 0.96096 0.87850 1.84739 1.46725 1.48766 1.50215 1.18626 0.94813 0.99464 0.95411 1.21193 0.98931 0.97810 0.94387 1.21332 0.93936 0.96568 1.00982 1.21295 0.99815 0.99313 0.91979 1.21314 0.96788 0.96736 0.98713 1.18091 0.96904 0.98610 0.91777 1.21394 0.97082 0.95046 0.96263 0.74004 0.88747 0.86098 0.92121 0.83726 0.72834 0.83218 0.82325 0.82521 0.84167 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.62 19.25 74.32 1.43 -6.19 16 2 C -0.21 -8.59 11.79 31.12 0.37 -8.22 16 3 C 0.18 7.63 5.40 84.57 0.46 8.09 16 4 N -0.45 -23.87 2.50 -648.90 -1.62 -25.50 16 5 C -0.49 -28.24 8.46 84.11 0.71 -27.52 16 6 H 0.07 4.02 8.06 -2.91 -0.02 4.00 16 7 C 0.11 6.07 5.33 84.96 0.45 6.52 16 8 N -0.75 -45.52 11.77 21.68 0.26 -45.26 16 9 Si 0.89 41.83 29.69 68.60 2.04 43.87 16 10 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 13 C 0.49 26.90 7.20 86.74 0.62 27.52 16 14 O -0.55 -35.17 14.76 -4.04 -0.06 -35.23 16 15 C -0.12 -5.00 5.47 -20.12 -0.11 -5.11 16 16 C -0.16 -5.75 7.23 22.38 0.16 -5.59 16 17 C 0.13 3.75 6.66 22.52 0.15 3.90 16 18 O -0.49 -11.34 12.68 -91.65 -1.16 -12.50 16 19 C -0.08 -2.33 5.76 -21.17 -0.12 -2.45 16 20 C -0.11 -2.17 9.55 22.31 0.21 -1.96 16 21 C -0.11 -1.81 9.95 22.06 0.22 -1.59 16 22 C -0.11 -1.87 9.95 22.04 0.22 -1.65 16 23 C -0.12 -2.80 9.77 22.37 0.22 -2.59 16 24 C -0.05 -1.66 5.74 -21.31 -0.12 -1.78 16 25 C -0.08 -3.02 9.35 22.85 0.21 -2.81 16 26 H 0.24 6.51 7.80 -4.41 -0.03 6.47 16 27 H 0.09 3.61 8.10 -2.39 -0.02 3.59 16 28 H 0.12 4.34 4.05 -2.38 -0.01 4.33 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.15 5.41 3.90 -2.91 -0.01 5.40 16 31 H 0.41 5.03 9.06 -74.05 -0.67 4.36 16 32 H 0.15 2.39 7.59 -2.91 -0.02 2.37 16 33 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.12 4.90 8.03 -2.91 -0.02 4.87 16 Total: -1.00 -80.20 318.65 5.00 -75.21 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.47 Total: 20.83 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 5.08 Total: -21.42 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -1.37 Total: -70.76 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -1.22 Total: -47.73 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.04 Total: 43.87 kcal Total: -80.20 5.00 -75.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.683 kcal (2) G-P(sol) polarization free energy of solvation -80.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds