Wall clock time and date at job start Tue Mar 31 2020 07:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47321 * 226.90242 * 3 2 1 5 5 C 1.36786 * 120.00698 * 261.58049 * 4 3 2 6 6 H 1.07994 * 120.00421 * 198.52261 * 5 4 3 7 7 C 1.39060 * 119.99408 * 18.52143 * 5 4 3 8 8 N 1.31365 * 119.99877 * 18.24000 * 7 5 4 9 9 Si 1.86799 * 119.99976 * 198.24235 * 7 5 4 10 10 H 1.48504 * 109.46944 * 90.00046 * 9 7 5 11 11 H 1.48493 * 109.47211 * 210.00092 * 9 7 5 12 12 H 1.48500 * 109.47027 * 330.00505 * 9 7 5 13 13 C 1.34782 * 120.00177 * 81.30562 * 4 3 2 14 14 O 1.21787 * 120.00446 * 184.14892 * 13 4 3 15 15 C 1.46173 * 119.99722 * 4.14631 * 13 4 3 16 16 O 1.34960 * 126.19344 * 353.71732 * 15 13 4 17 17 C 1.33961 * 109.70854 * 179.82253 * 16 15 13 18 18 C 1.34788 * 109.37719 * 0.45085 * 17 16 15 19 19 C 1.38945 * 126.19990 * 174.02494 * 15 13 4 20 20 C 1.48127 * 126.90385 * 0.02562 * 19 15 13 21 21 C 1.39479 * 120.13260 * 309.71199 * 20 19 15 22 22 C 1.37976 * 119.85958 * 179.72829 * 21 20 19 23 23 C 1.38352 * 120.13698 * 0.58117 * 22 21 20 24 24 C 1.38348 * 120.27083 * 359.69835 * 23 22 21 25 25 C 1.37976 * 120.13575 * 359.97438 * 24 23 22 26 26 H 4.40637 * 5.51481 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47318 * 106.90269 * 3 2 1 28 28 H 1.08999 * 109.47161 * 346.90769 * 3 2 1 29 29 H 0.97006 * 119.99656 * 179.97438 * 8 7 5 30 30 H 1.08004 * 125.31169 * 180.17592 * 17 16 15 31 31 H 1.07996 * 126.43714 * 179.71516 * 18 17 16 32 32 H 1.07998 * 120.07171 * 0.03455 * 21 20 19 33 33 H 1.08007 * 119.93590 * 180.30107 * 22 21 20 34 34 H 1.07999 * 119.86553 * 179.71948 * 23 22 21 35 35 H 1.08003 * 119.93447 * 180.02562 * 24 23 22 36 36 H 1.08005 * 120.07233 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 0.9445 1.0085 5 6 3.5248 2.2015 0.6366 6 1 4.1510 2.7883 1.2922 7 6 3.1160 2.7235 -0.5857 8 7 2.0927 2.1941 -1.2168 9 14 4.0218 4.1777 -1.3301 10 1 5.1262 3.6845 -2.1918 11 1 3.0786 4.9830 -2.1468 12 1 4.5809 5.0216 -0.2436 13 6 3.1923 0.5764 2.3037 14 8 3.5259 1.3841 3.1520 15 6 2.8554 -0.7924 2.6903 16 8 2.3594 -1.7505 1.8794 17 6 2.1759 -2.8806 2.5749 18 6 2.5393 -2.6805 3.8573 19 6 2.9820 -1.3412 3.9606 20 6 3.4800 -0.6601 5.1781 21 6 4.6865 0.0389 5.1455 22 6 5.1423 0.6759 6.2814 23 6 4.4112 0.6123 7.4542 24 6 3.2165 -0.0844 7.4943 25 6 2.7469 -0.7199 6.3633 26 1 -1.0502 0.0000 -0.0003 27 1 3.0091 0.2996 -0.9833 28 1 3.0097 -1.0001 0.2328 29 1 1.8073 2.5585 -2.0693 30 1 1.7922 -3.8063 2.1719 31 1 2.4996 -3.4064 4.6560 32 1 5.2604 0.0855 4.2318 33 1 6.0740 1.2216 6.2562 34 1 4.7743 1.1087 8.3419 35 1 2.6500 -0.1302 8.4127 36 1 1.8140 -1.2631 6.3957 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490986890.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:40 Heat of formation + Delta-G solvation = 84.249431 kcal Electronic energy + Delta-G solvation = -23103.355604 eV Core-core repulsion = 19714.872747 eV Total energy + Delta-G solvation = -3388.482858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.06245 -38.57919 -38.31587 -35.34815 -33.24598 -32.24142 -31.29069 -30.54124 -30.26358 -28.65782 -26.54786 -25.04431 -22.98634 -22.30029 -21.53309 -20.58046 -19.07756 -17.98268 -17.39639 -16.62997 -16.26895 -15.71213 -15.59630 -14.92998 -14.39221 -14.36945 -14.18279 -13.85226 -13.14173 -13.02839 -12.90171 -12.68154 -12.59105 -12.32654 -12.10061 -11.72986 -11.64342 -11.09597 -10.82451 -10.70857 -10.59993 -10.45088 -9.64834 -9.43828 -9.40873 -8.92204 -8.84804 -8.50064 -8.32746 -8.00296 -7.70463 -6.51759 -3.99604 1.38692 1.87041 1.96962 2.83664 3.11117 3.16907 3.21441 3.38221 3.70404 4.00427 4.10844 4.18211 4.28227 4.79210 4.96528 5.03831 5.24236 5.31435 5.40426 5.45865 5.50203 5.59516 5.81292 5.87516 5.97163 6.14451 6.22337 6.38277 6.48759 6.56466 6.66615 6.74666 6.88326 6.96735 7.01530 7.07292 7.37936 7.38264 7.42979 7.91049 8.27249 8.81007 8.94400 9.14480 9.73312 10.47830 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.005740 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.150172 B = 4876.621037 C = 6190.454091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.106 4.106 3 C 0.223 3.777 4 N -0.413 5.413 5 C -0.306 4.306 6 H 0.111 0.889 7 C 0.032 3.968 8 N -0.851 5.851 9 Si 0.930 3.070 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.503 3.497 14 O -0.556 6.556 15 C -0.009 4.009 16 O -0.152 6.152 17 C -0.048 4.048 18 C -0.203 4.203 19 C -0.109 4.109 20 C -0.002 4.002 21 C -0.059 4.059 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.132 4.132 25 C -0.110 4.110 26 H 0.199 0.801 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.273 0.727 30 H 0.198 0.802 31 H 0.147 0.853 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 -8.945 6.761 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.108 4.108 3 C 0.100 3.900 4 N -0.129 5.129 5 C -0.434 4.434 6 H 0.128 0.872 7 C -0.175 4.175 8 N -0.487 5.487 9 Si 0.756 3.244 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.191 1.191 13 C 0.292 3.708 14 O -0.441 6.441 15 C -0.063 4.063 16 O -0.046 6.046 17 C -0.117 4.117 18 C -0.222 4.222 19 C -0.113 4.113 20 C -0.003 4.003 21 C -0.078 4.078 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.150 4.150 25 C -0.128 4.128 26 H 0.216 0.784 27 H 0.135 0.865 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.215 0.785 31 H 0.165 0.835 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.381 -8.422 6.630 10.807 hybrid contribution -0.267 0.560 -0.454 0.768 sum 1.114 -7.862 6.176 10.060 Atomic orbital electron populations 1.24248 0.95359 1.04965 1.03554 1.22986 0.94143 0.96132 0.97503 1.18542 0.84676 0.91327 0.95451 1.43715 1.52386 1.12685 1.04088 1.19818 1.28554 0.91924 1.03089 0.87171 1.25466 0.95243 0.99316 0.97442 1.70067 1.21027 1.41430 1.16209 0.85852 0.79028 0.80364 0.79139 1.20009 1.20807 1.19089 1.16348 0.87252 0.83902 0.83301 1.90759 1.54407 1.50011 1.48900 1.23284 1.03499 0.90399 0.89086 1.84413 1.63356 1.18911 1.37956 1.24005 1.05532 0.90375 0.91763 1.21579 1.06823 0.96383 0.97464 1.19287 1.05900 0.93669 0.92425 1.17962 0.94247 0.97247 0.90806 1.21156 0.94947 0.94115 0.97533 1.20995 1.00248 0.99972 0.93011 1.21068 0.95588 0.99914 0.97852 1.20890 0.96805 0.99386 0.97922 1.21080 0.99199 1.00249 0.92276 0.78360 0.86544 0.90685 0.91607 0.78496 0.83530 0.86114 0.86427 0.86760 0.86622 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.63 19.25 29.55 0.57 -5.06 16 2 C -0.11 -2.46 10.59 -37.13 -0.39 -2.85 16 3 C 0.22 5.09 4.75 -6.84 -0.03 5.06 16 4 N -0.41 -10.55 2.61 -119.62 -0.31 -10.86 16 5 C -0.31 -8.20 9.31 -15.04 -0.14 -8.34 16 6 H 0.11 3.05 7.41 -52.49 -0.39 2.66 16 7 C 0.03 0.80 4.94 -17.45 -0.09 0.71 16 8 N -0.85 -21.74 9.45 55.50 0.52 -21.22 16 9 Si 0.93 19.72 29.59 -169.99 -5.03 14.69 16 10 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 13 C 0.50 12.69 7.40 -13.07 -0.10 12.59 16 14 O -0.56 -15.17 13.41 5.11 0.07 -15.10 16 15 C -0.01 -0.20 6.75 -36.14 -0.24 -0.44 16 16 O -0.15 -2.88 6.50 4.78 0.03 -2.85 16 17 C -0.05 -0.70 12.02 29.51 0.35 -0.35 16 18 C -0.20 -3.13 10.81 -39.59 -0.43 -3.56 16 19 C -0.11 -2.10 5.69 -104.36 -0.59 -2.70 16 20 C 0.00 -0.05 5.22 -104.91 -0.55 -0.59 16 21 C -0.06 -1.12 7.71 -39.22 -0.30 -1.43 16 22 C -0.12 -2.03 10.03 -39.64 -0.40 -2.42 16 23 C -0.13 -1.84 10.04 -39.50 -0.40 -2.24 16 24 C -0.13 -1.93 10.03 -39.64 -0.40 -2.33 16 25 C -0.11 -1.81 9.75 -39.21 -0.38 -2.19 16 26 H 0.20 3.47 7.80 -54.08 -0.42 3.05 16 27 H 0.12 2.74 6.23 -51.93 -0.32 2.41 16 28 H 0.08 1.54 5.55 -51.93 -0.29 1.26 16 29 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.20 1.97 8.06 -52.48 -0.42 1.55 16 31 H 0.15 1.81 8.06 -52.49 -0.42 1.38 16 32 H 0.12 2.42 7.54 -52.49 -0.40 2.02 16 33 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 34 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 318.35 15.07 4.80 4.80 Total: -1.00 -30.93 318.35 -6.93 -37.86 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -3.49 Total: 8.82 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -3.51 Total: -16.15 kcal Atomic # 7 Polarization: -32.29 SS G_CDS: 0.21 Total: -32.08 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: 0.10 Total: -17.94 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.93 -6.93 -37.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490986890.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.107 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds