Wall clock time and date at job start Tue Mar 31 2020 07:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47321 * 226.90242 * 3 2 1 5 5 C 1.36786 * 120.00698 * 261.58049 * 4 3 2 6 6 H 1.07994 * 120.00421 * 198.52261 * 5 4 3 7 7 C 1.39060 * 119.99408 * 18.52143 * 5 4 3 8 8 N 1.31365 * 119.99877 * 18.24000 * 7 5 4 9 9 Si 1.86799 * 119.99976 * 198.24235 * 7 5 4 10 10 H 1.48504 * 109.46944 * 90.00046 * 9 7 5 11 11 H 1.48493 * 109.47211 * 210.00092 * 9 7 5 12 12 H 1.48500 * 109.47027 * 330.00505 * 9 7 5 13 13 C 1.34782 * 120.00177 * 81.30562 * 4 3 2 14 14 O 1.21787 * 120.00446 * 184.14892 * 13 4 3 15 15 C 1.46173 * 119.99722 * 4.14631 * 13 4 3 16 16 O 1.34960 * 126.19344 * 353.71732 * 15 13 4 17 17 C 1.33961 * 109.70854 * 179.82253 * 16 15 13 18 18 C 1.34788 * 109.37719 * 0.45085 * 17 16 15 19 19 C 1.38945 * 126.19990 * 174.02494 * 15 13 4 20 20 C 1.48127 * 126.90385 * 0.02562 * 19 15 13 21 21 C 1.39479 * 120.13260 * 309.71199 * 20 19 15 22 22 C 1.37976 * 119.85958 * 179.72829 * 21 20 19 23 23 C 1.38352 * 120.13698 * 0.58117 * 22 21 20 24 24 C 1.38348 * 120.27083 * 359.69835 * 23 22 21 25 25 C 1.37976 * 120.13575 * 359.97438 * 24 23 22 26 26 H 4.40637 * 5.51481 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47318 * 106.90269 * 3 2 1 28 28 H 1.08999 * 109.47161 * 346.90769 * 3 2 1 29 29 H 0.97006 * 119.99656 * 179.97438 * 8 7 5 30 30 H 1.08004 * 125.31169 * 180.17592 * 17 16 15 31 31 H 1.07996 * 126.43714 * 179.71516 * 18 17 16 32 32 H 1.07998 * 120.07171 * 0.03455 * 21 20 19 33 33 H 1.08007 * 119.93590 * 180.30107 * 22 21 20 34 34 H 1.07999 * 119.86553 * 179.71948 * 23 22 21 35 35 H 1.08003 * 119.93447 * 180.02562 * 24 23 22 36 36 H 1.08005 * 120.07233 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 0.9445 1.0085 5 6 3.5248 2.2015 0.6366 6 1 4.1510 2.7883 1.2922 7 6 3.1160 2.7235 -0.5857 8 7 2.0927 2.1941 -1.2168 9 14 4.0218 4.1777 -1.3301 10 1 5.1262 3.6845 -2.1918 11 1 3.0786 4.9830 -2.1468 12 1 4.5809 5.0216 -0.2436 13 6 3.1923 0.5764 2.3037 14 8 3.5259 1.3841 3.1520 15 6 2.8554 -0.7924 2.6903 16 8 2.3594 -1.7505 1.8794 17 6 2.1759 -2.8806 2.5749 18 6 2.5393 -2.6805 3.8573 19 6 2.9820 -1.3412 3.9606 20 6 3.4800 -0.6601 5.1781 21 6 4.6865 0.0389 5.1455 22 6 5.1423 0.6759 6.2814 23 6 4.4112 0.6123 7.4542 24 6 3.2165 -0.0844 7.4943 25 6 2.7469 -0.7199 6.3633 26 1 -1.0502 0.0000 -0.0003 27 1 3.0091 0.2996 -0.9833 28 1 3.0097 -1.0001 0.2328 29 1 1.8073 2.5585 -2.0693 30 1 1.7922 -3.8063 2.1719 31 1 2.4996 -3.4064 4.6560 32 1 5.2604 0.0855 4.2318 33 1 6.0740 1.2216 6.2562 34 1 4.7743 1.1087 8.3419 35 1 2.6500 -0.1302 8.4127 36 1 1.8140 -1.2631 6.3957 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490986890.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:40 Heat of formation + Delta-G solvation = 67.554979 kcal Electronic energy + Delta-G solvation = -23104.079530 eV Core-core repulsion = 19714.872747 eV Total energy + Delta-G solvation = -3389.206783 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.47046 -40.25268 -39.75909 -37.21055 -34.65184 -34.07501 -33.10021 -31.81979 -31.54980 -30.13676 -28.34354 -26.83539 -24.45453 -23.58356 -22.99519 -21.96353 -20.56812 -19.76924 -19.03869 -18.24522 -17.83197 -17.09835 -17.07743 -16.64706 -15.99272 -15.77043 -15.66104 -15.52267 -14.82473 -14.38819 -14.34939 -14.15524 -14.02675 -13.86858 -13.61896 -13.42917 -13.12785 -12.79177 -12.56391 -12.17708 -12.05354 -11.96486 -11.28020 -11.22795 -10.99372 -10.70129 -10.60890 -9.93376 -9.77561 -9.67985 -9.13095 -8.41995 -6.00935 -0.05863 0.58786 0.65824 1.38474 1.40652 1.52578 1.57053 1.91030 2.01684 2.25016 2.35842 2.40922 2.96695 3.04438 3.15448 3.73965 3.83941 3.96206 4.03370 4.18266 4.20581 4.31343 4.52341 4.56027 4.66534 4.72433 4.88666 4.95071 5.03819 5.16402 5.21822 5.36371 5.37481 5.45924 5.63580 5.67217 5.75303 5.89296 6.09713 6.17553 6.39056 7.00656 7.09270 7.25170 7.83921 8.56748 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.005740 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.150172 B = 4876.621037 C = 6190.454091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.145 4.145 3 C 0.231 3.769 4 N -0.431 5.431 5 C -0.347 4.347 6 H 0.083 0.917 7 C 0.003 3.997 8 N -0.868 5.868 9 Si 0.995 3.005 10 H -0.261 1.261 11 H -0.274 1.274 12 H -0.275 1.275 13 C 0.499 3.501 14 O -0.593 6.593 15 C -0.065 4.065 16 O -0.164 6.164 17 C -0.017 4.017 18 C -0.209 4.209 19 C -0.096 4.096 20 C -0.036 4.036 21 C -0.087 4.087 22 C -0.136 4.136 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.115 4.115 26 H 0.235 0.765 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.277 0.723 30 H 0.253 0.747 31 H 0.184 0.816 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 -10.685 8.243 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.147 4.147 3 C 0.109 3.891 4 N -0.146 5.146 5 C -0.474 4.474 6 H 0.101 0.899 7 C -0.202 4.202 8 N -0.504 5.504 9 Si 0.817 3.183 10 H -0.186 1.186 11 H -0.199 1.199 12 H -0.200 1.200 13 C 0.290 3.710 14 O -0.481 6.481 15 C -0.118 4.118 16 O -0.059 6.059 17 C -0.086 4.086 18 C -0.228 4.228 19 C -0.100 4.100 20 C -0.036 4.036 21 C -0.105 4.105 22 C -0.154 4.154 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.133 4.133 26 H 0.252 0.748 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.269 0.731 31 H 0.201 0.799 32 H 0.108 0.892 33 H 0.149 0.851 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.063 -10.183 8.094 13.008 hybrid contribution 0.096 0.928 -0.720 1.179 sum 0.159 -9.255 7.374 11.834 Atomic orbital electron populations 1.25132 0.96324 1.03369 1.01918 1.23268 0.94751 0.97633 0.99012 1.18455 0.85121 0.91498 0.94024 1.43848 1.53226 1.12759 1.04792 1.19720 1.30336 0.93234 1.04148 0.89868 1.26178 0.95536 1.01547 0.96928 1.70149 1.21493 1.42385 1.16352 0.84921 0.78183 0.77139 0.78022 1.18584 1.19926 1.19986 1.16867 0.85796 0.85434 0.82895 1.90692 1.55626 1.51924 1.49881 1.22557 1.08585 0.90139 0.90487 1.84344 1.63488 1.19680 1.38376 1.25165 1.01796 0.90180 0.91439 1.21981 1.06717 0.95144 0.98950 1.19781 1.03300 0.95243 0.91626 1.18235 0.94914 0.98598 0.91896 1.21089 0.95824 0.96127 0.97493 1.21265 1.01273 0.99790 0.93092 1.21513 0.95153 0.99019 0.98129 1.21376 0.96709 0.97698 0.98688 1.21367 0.99596 1.00511 0.91818 0.74849 0.88046 0.89034 0.91275 0.73092 0.79853 0.89244 0.85071 0.83106 0.82741 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.46 19.25 74.32 1.43 -9.03 16 2 C -0.15 -6.81 10.59 31.12 0.33 -6.48 16 3 C 0.23 11.02 4.75 84.57 0.40 11.43 16 4 N -0.43 -23.40 2.61 -650.53 -1.70 -25.10 16 5 C -0.35 -19.86 9.31 84.12 0.78 -19.08 16 6 H 0.08 5.04 7.41 -2.91 -0.02 5.02 16 7 C 0.00 0.14 4.94 84.96 0.42 0.56 16 8 N -0.87 -45.49 9.45 21.68 0.20 -45.28 16 9 Si 0.99 41.77 29.59 68.60 2.03 43.80 16 10 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 11 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 C 0.50 26.90 7.40 86.30 0.64 27.54 16 14 O -0.59 -34.97 13.41 -4.63 -0.06 -35.03 16 15 C -0.07 -2.91 6.75 24.50 0.17 -2.74 16 16 O -0.16 -6.11 6.50 -5.80 -0.04 -6.15 16 17 C -0.02 -0.45 12.02 67.03 0.81 0.35 16 18 C -0.21 -5.87 10.81 22.27 0.24 -5.63 16 19 C -0.10 -3.70 5.69 -19.69 -0.11 -3.81 16 20 C -0.04 -1.38 5.22 -20.05 -0.10 -1.49 16 21 C -0.09 -3.46 7.71 22.51 0.17 -3.29 16 22 C -0.14 -4.48 10.03 22.23 0.22 -4.25 16 23 C -0.12 -3.23 10.04 22.32 0.22 -3.01 16 24 C -0.13 -3.32 10.03 22.23 0.22 -3.10 16 25 C -0.11 -3.57 9.75 22.51 0.22 -3.35 16 26 H 0.23 7.60 7.80 -4.41 -0.03 7.57 16 27 H 0.10 5.03 6.23 -2.39 -0.01 5.01 16 28 H 0.09 3.92 5.55 -2.39 -0.01 3.91 16 29 H 0.28 13.58 8.31 -92.70 -0.77 12.81 16 30 H 0.25 3.60 8.06 -2.91 -0.02 3.57 16 31 H 0.18 3.71 8.06 -2.91 -0.02 3.68 16 32 H 0.09 3.99 7.54 -2.91 -0.02 3.96 16 33 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 34 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -73.31 318.35 7.60 -65.71 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 1.10 Total: 27.44 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 6.06 Total: -25.38 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -1.49 Total: -70.38 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -0.10 Total: -41.18 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -73.31 7.60 -65.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490986890.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.265 kcal (2) G-P(sol) polarization free energy of solvation -73.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds