Wall clock time and date at job start Tue Mar 31 2020 07:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47241 * 34.05422 * 3 2 1 5 5 C 1.36789 * 120.00032 * 263.00791 * 4 3 2 6 6 H 1.07999 * 119.99986 * 202.07805 * 5 4 3 7 7 C 1.39045 * 120.00288 * 22.08580 * 5 4 3 8 8 N 1.31372 * 119.99685 * 10.89753 * 7 5 4 9 9 Si 1.86795 * 120.00204 * 190.90244 * 7 5 4 10 10 H 1.48507 * 109.47229 * 89.99840 * 9 7 5 11 11 H 1.48501 * 109.47334 * 209.99844 * 9 7 5 12 12 H 1.48498 * 109.47124 * 330.00005 * 9 7 5 13 13 C 1.34775 * 119.99836 * 83.00719 * 4 3 2 14 14 O 1.21778 * 120.00118 * 184.35387 * 13 4 3 15 15 C 1.46357 * 120.00033 * 4.35992 * 13 4 3 16 16 C 1.37932 * 125.96441 * 173.95668 * 15 13 4 17 17 C 1.39792 * 106.76591 * 180.02562 * 16 15 13 18 18 C 1.36594 * 107.11154 * 359.97438 * 17 16 15 19 19 C 1.47669 * 125.65057 * 180.02562 * 18 17 16 20 20 C 1.39671 * 120.15035 * 180.02562 * 19 18 17 21 21 C 1.37926 * 119.84132 * 179.97438 * 20 19 18 22 22 C 1.38382 * 120.15701 * 359.96775 * 21 20 19 23 23 C 1.38381 * 120.30821 * 0.05328 * 22 21 20 24 24 C 1.37933 * 120.15215 * 359.95036 * 23 22 21 25 25 O 1.34386 * 108.69769 * 0.26366 * 18 17 16 26 26 H 4.40644 * 5.51424 * 179.97438 * 4 1 2 27 27 H 1.09002 * 109.46950 * 274.05446 * 3 2 1 28 28 H 1.09006 * 109.47037 * 154.05246 * 3 2 1 29 29 H 0.97007 * 120.00137 * 179.97438 * 8 7 5 30 30 H 1.07997 * 126.61782 * 359.97438 * 16 15 13 31 31 H 1.08004 * 126.44701 * 179.97438 * 17 16 15 32 32 H 1.08002 * 120.07876 * 359.69918 * 20 19 18 33 33 H 1.08005 * 119.92396 * 179.97438 * 21 20 19 34 34 H 1.07996 * 119.84770 * 179.97438 * 22 21 20 35 35 H 1.07996 * 119.92153 * 179.97438 * 23 22 21 36 36 H 1.08003 * 120.07922 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1435 -0.7735 5 6 3.4994 -2.2962 -0.1334 6 1 4.1728 -2.9906 -0.6136 7 6 3.0028 -2.5739 1.1352 8 7 2.0262 -1.8487 1.6316 9 14 3.7241 -3.9780 2.1339 10 1 4.8515 -3.4717 2.9574 11 1 2.6768 -4.5427 3.0224 12 1 4.2176 -5.0358 1.2160 13 6 3.2255 -1.0603 -2.1156 14 8 3.5559 -2.0359 -2.7652 15 6 2.9270 0.2026 -2.7923 16 6 3.0914 0.4594 -4.1375 17 6 2.6869 1.7809 -4.3482 18 6 2.2937 2.2785 -3.1384 19 6 1.7885 3.6441 -2.8926 20 6 1.4175 4.0335 -1.6036 21 6 0.9469 5.3107 -1.3811 22 6 0.8426 6.2059 -2.4312 23 6 1.2080 5.8268 -3.7110 24 6 1.6801 4.5526 -3.9479 25 8 2.4478 1.3211 -2.2080 26 1 -1.0498 -0.0004 -0.0001 27 1 3.0094 -0.0718 1.0251 28 1 3.0090 0.9249 -0.4497 29 1 1.6794 -2.0426 2.5165 30 1 3.4620 -0.2275 -4.8839 31 1 2.6855 2.3090 -5.2902 32 1 1.4947 3.3346 -0.7838 33 1 0.6593 5.6131 -0.3849 34 1 0.4731 7.2046 -2.2515 35 1 1.1236 6.5303 -4.5260 36 1 1.9653 4.2581 -4.9471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490987092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:43 Heat of formation + Delta-G solvation = 81.229083 kcal Electronic energy + Delta-G solvation = -22735.327148 eV Core-core repulsion = 19346.713319 eV Total energy + Delta-G solvation = -3388.613830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.11046 -38.98207 -38.35313 -35.36839 -32.98824 -32.14313 -31.85616 -31.29801 -30.92109 -28.32968 -26.51843 -25.09496 -23.25578 -22.84950 -21.20667 -20.59497 -19.57783 -17.98444 -17.64637 -16.88575 -16.40106 -15.86706 -15.68156 -15.02528 -14.83995 -14.24250 -14.08610 -13.90807 -13.54094 -13.12208 -12.90669 -12.84222 -12.66818 -12.43076 -12.36877 -11.83143 -11.55749 -11.34721 -11.11583 -11.03404 -10.63405 -10.46009 -9.83086 -9.47885 -9.38765 -9.28593 -9.02098 -8.90931 -8.75950 -8.02678 -7.56958 -6.49101 -4.04817 0.76950 1.34916 1.97726 2.84857 3.10252 3.12024 3.18113 3.23146 3.71559 3.86876 4.00927 4.12011 4.21694 4.65634 4.78042 4.88808 4.97194 4.97736 5.07251 5.28308 5.36811 5.46862 5.52593 5.64129 5.78042 5.95280 6.07480 6.10986 6.18588 6.38203 6.44227 6.45628 6.58984 6.76391 6.84392 6.89187 7.04439 7.36532 7.37521 7.90105 8.25613 8.84436 8.91926 9.11992 9.69141 10.48886 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022331 B = 0.004536 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.581054 B = 6171.047802 C = 7118.671173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.102 4.102 3 C 0.224 3.776 4 N -0.413 5.413 5 C -0.306 4.306 6 H 0.109 0.891 7 C 0.032 3.968 8 N -0.855 5.855 9 Si 0.934 3.066 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.506 3.494 14 O -0.567 6.567 15 C -0.014 4.014 16 C -0.165 4.165 17 C -0.187 4.187 18 C 0.006 3.994 19 C -0.004 4.004 20 C -0.102 4.102 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.104 4.104 25 O -0.144 6.144 26 H 0.198 0.802 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.274 0.726 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.985 14.769 -4.693 15.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.103 4.103 3 C 0.102 3.898 4 N -0.129 5.129 5 C -0.434 4.434 6 H 0.127 0.873 7 C -0.174 4.174 8 N -0.492 5.492 9 Si 0.760 3.240 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.191 1.191 13 C 0.296 3.704 14 O -0.453 6.453 15 C -0.067 4.067 16 C -0.186 4.186 17 C -0.206 4.206 18 C -0.045 4.045 19 C -0.004 4.004 20 C -0.120 4.120 21 C -0.134 4.134 22 C -0.141 4.141 23 C -0.137 4.137 24 C -0.122 4.122 25 O -0.040 6.040 26 H 0.215 0.785 27 H 0.135 0.865 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.173 0.827 31 H 0.166 0.834 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.969 14.285 -4.450 15.091 hybrid contribution -0.169 -0.667 0.465 0.830 sum -2.137 13.619 -3.985 14.350 Atomic orbital electron populations 1.24205 0.95317 1.04018 1.04788 1.22902 0.94036 0.96791 0.96605 1.18561 0.84776 0.87457 0.99009 1.43663 1.52662 1.12918 1.03610 1.19827 1.25881 0.98808 0.98863 0.87336 1.25516 0.94967 0.98910 0.97998 1.69995 1.22231 1.39082 1.17907 0.85786 0.78473 0.80486 0.79227 1.20006 1.20716 1.19073 1.16444 0.86947 0.84750 0.82298 1.90722 1.54901 1.35221 1.64430 1.23274 1.03552 0.86695 0.93198 1.21875 1.05274 0.96375 0.95108 1.21558 1.05735 0.95664 0.97678 1.20620 1.06286 0.89729 0.87915 1.17829 0.99612 0.88717 0.94248 1.21402 0.97639 0.96621 0.96334 1.21097 0.99543 0.93433 0.99322 1.21230 1.00284 0.99597 0.92997 1.20996 0.99691 0.95870 0.97129 1.21056 0.99857 0.93053 0.98226 1.84444 1.64248 1.19405 1.35889 0.78466 0.86479 0.90816 0.91557 0.82734 0.83384 0.85115 0.85697 0.86069 0.85734 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.73 19.25 29.55 0.57 -5.16 16 2 C -0.10 -2.37 10.58 -37.12 -0.39 -2.77 16 3 C 0.22 5.19 4.75 -6.83 -0.03 5.16 16 4 N -0.41 -10.73 2.60 -119.54 -0.31 -11.04 16 5 C -0.31 -8.29 9.27 -15.04 -0.14 -8.43 16 6 H 0.11 3.02 7.43 -52.49 -0.39 2.63 16 7 C 0.03 0.81 5.09 -17.45 -0.09 0.72 16 8 N -0.86 -21.87 9.11 55.50 0.51 -21.36 16 9 Si 0.93 19.87 29.57 -169.99 -5.03 14.84 16 10 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 13 C 0.51 13.09 7.50 -13.00 -0.10 12.99 16 14 O -0.57 -16.10 16.59 5.12 0.08 -16.01 16 15 C -0.01 -0.30 6.77 -36.43 -0.25 -0.54 16 16 C -0.17 -3.12 10.66 -39.11 -0.42 -3.54 16 17 C -0.19 -2.99 10.21 -39.59 -0.40 -3.40 16 18 C 0.01 0.10 7.02 -36.33 -0.25 -0.15 16 19 C 0.00 -0.06 5.87 -104.98 -0.62 -0.67 16 20 C -0.10 -1.41 9.72 -39.16 -0.38 -1.79 16 21 C -0.12 -1.30 10.03 -39.64 -0.40 -1.70 16 22 C -0.12 -1.21 10.04 -39.48 -0.40 -1.61 16 23 C -0.12 -1.18 10.03 -39.64 -0.40 -1.57 16 24 C -0.10 -1.21 9.56 -39.16 -0.37 -1.59 16 25 O -0.14 -2.89 6.31 3.59 0.02 -2.86 16 26 H 0.20 3.53 7.80 -54.10 -0.42 3.11 16 27 H 0.12 2.78 6.36 -51.93 -0.33 2.45 16 28 H 0.07 1.56 5.38 -51.93 -0.28 1.28 16 29 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.15 2.74 8.06 -52.49 -0.42 2.32 16 31 H 0.15 1.81 7.23 -52.48 -0.38 1.43 16 32 H 0.13 1.91 7.90 -52.49 -0.41 1.49 16 33 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.13 1.24 6.96 -52.48 -0.37 0.88 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -30.90 321.45 -7.35 -38.25 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -3.41 Total: 7.39 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -4.07 Total: -14.05 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.20 Total: -32.40 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.11 Total: -18.88 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.90 -7.35 -38.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490987092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.484 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds