Wall clock time and date at job start Tue Mar 31 2020 07:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47241 * 34.05422 * 3 2 1 5 5 C 1.36789 * 120.00032 * 263.00791 * 4 3 2 6 6 H 1.07999 * 119.99986 * 202.07805 * 5 4 3 7 7 C 1.39045 * 120.00288 * 22.08580 * 5 4 3 8 8 N 1.31372 * 119.99685 * 10.89753 * 7 5 4 9 9 Si 1.86795 * 120.00204 * 190.90244 * 7 5 4 10 10 H 1.48507 * 109.47229 * 89.99840 * 9 7 5 11 11 H 1.48501 * 109.47334 * 209.99844 * 9 7 5 12 12 H 1.48498 * 109.47124 * 330.00005 * 9 7 5 13 13 C 1.34775 * 119.99836 * 83.00719 * 4 3 2 14 14 O 1.21778 * 120.00118 * 184.35387 * 13 4 3 15 15 C 1.46357 * 120.00033 * 4.35992 * 13 4 3 16 16 C 1.37932 * 125.96441 * 173.95668 * 15 13 4 17 17 C 1.39792 * 106.76591 * 180.02562 * 16 15 13 18 18 C 1.36594 * 107.11154 * 359.97438 * 17 16 15 19 19 C 1.47669 * 125.65057 * 180.02562 * 18 17 16 20 20 C 1.39671 * 120.15035 * 180.02562 * 19 18 17 21 21 C 1.37926 * 119.84132 * 179.97438 * 20 19 18 22 22 C 1.38382 * 120.15701 * 359.96775 * 21 20 19 23 23 C 1.38381 * 120.30821 * 0.05328 * 22 21 20 24 24 C 1.37933 * 120.15215 * 359.95036 * 23 22 21 25 25 O 1.34386 * 108.69769 * 0.26366 * 18 17 16 26 26 H 4.40644 * 5.51424 * 179.97438 * 4 1 2 27 27 H 1.09002 * 109.46950 * 274.05446 * 3 2 1 28 28 H 1.09006 * 109.47037 * 154.05246 * 3 2 1 29 29 H 0.97007 * 120.00137 * 179.97438 * 8 7 5 30 30 H 1.07997 * 126.61782 * 359.97438 * 16 15 13 31 31 H 1.08004 * 126.44701 * 179.97438 * 17 16 15 32 32 H 1.08002 * 120.07876 * 359.69918 * 20 19 18 33 33 H 1.08005 * 119.92396 * 179.97438 * 21 20 19 34 34 H 1.07996 * 119.84770 * 179.97438 * 22 21 20 35 35 H 1.07996 * 119.92153 * 179.97438 * 23 22 21 36 36 H 1.08003 * 120.07922 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1435 -0.7735 5 6 3.4994 -2.2962 -0.1334 6 1 4.1728 -2.9906 -0.6136 7 6 3.0028 -2.5739 1.1352 8 7 2.0262 -1.8487 1.6316 9 14 3.7241 -3.9780 2.1339 10 1 4.8515 -3.4717 2.9574 11 1 2.6768 -4.5427 3.0224 12 1 4.2176 -5.0358 1.2160 13 6 3.2255 -1.0603 -2.1156 14 8 3.5559 -2.0359 -2.7652 15 6 2.9270 0.2026 -2.7923 16 6 3.0914 0.4594 -4.1375 17 6 2.6869 1.7809 -4.3482 18 6 2.2937 2.2785 -3.1384 19 6 1.7885 3.6441 -2.8926 20 6 1.4175 4.0335 -1.6036 21 6 0.9469 5.3107 -1.3811 22 6 0.8426 6.2059 -2.4312 23 6 1.2080 5.8268 -3.7110 24 6 1.6801 4.5526 -3.9479 25 8 2.4478 1.3211 -2.2080 26 1 -1.0498 -0.0004 -0.0001 27 1 3.0094 -0.0718 1.0251 28 1 3.0090 0.9249 -0.4497 29 1 1.6794 -2.0426 2.5165 30 1 3.4620 -0.2275 -4.8839 31 1 2.6855 2.3090 -5.2902 32 1 1.4947 3.3346 -0.7838 33 1 0.6593 5.6131 -0.3849 34 1 0.4731 7.2046 -2.2515 35 1 1.1236 6.5303 -4.5260 36 1 1.9653 4.2581 -4.9471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490987092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:42 Heat of formation + Delta-G solvation = 64.845398 kcal Electronic energy + Delta-G solvation = -22736.037598 eV Core-core repulsion = 19346.713319 eV Total energy + Delta-G solvation = -3389.324280 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.57783 -40.39350 -39.76919 -37.32016 -34.43180 -33.94410 -33.18083 -33.01605 -31.81980 -29.76458 -28.33802 -26.87719 -24.58421 -23.90803 -22.54258 -21.85582 -21.19062 -19.82569 -19.15941 -18.37068 -18.09828 -17.25814 -17.04896 -16.67493 -16.03081 -15.76007 -15.74303 -15.27734 -14.81686 -14.56180 -14.35826 -14.32689 -14.01805 -13.76075 -13.73399 -13.48804 -13.34962 -12.82604 -12.62946 -12.24818 -12.17409 -11.91547 -11.36891 -11.25542 -11.09615 -10.84311 -10.62621 -10.52762 -9.97261 -9.89033 -8.88116 -8.42143 -6.09780 -0.40007 0.48079 0.58120 1.39646 1.40271 1.52222 1.60193 1.68825 1.93075 2.21085 2.32147 2.38278 2.93539 3.01294 3.03871 3.53629 3.79032 3.90189 3.95079 4.07401 4.09922 4.29378 4.49009 4.53855 4.56381 4.66484 4.80308 4.87420 4.91284 5.06781 5.12131 5.32585 5.33019 5.36342 5.49066 5.58506 5.60999 5.83987 6.03231 6.03825 6.32339 6.93358 7.06827 7.17469 7.73446 8.54700 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022331 B = 0.004536 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.581054 B = 6171.047802 C = 7118.671173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.139 4.139 3 C 0.234 3.766 4 N -0.427 5.427 5 C -0.350 4.350 6 H 0.086 0.914 7 C 0.003 3.997 8 N -0.869 5.869 9 Si 1.001 2.999 10 H -0.260 1.260 11 H -0.273 1.273 12 H -0.274 1.274 13 C 0.499 3.501 14 O -0.611 6.611 15 C -0.069 4.069 16 C -0.145 4.145 17 C -0.186 4.186 18 C 0.021 3.979 19 C -0.041 4.041 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.098 4.098 25 O -0.157 6.157 26 H 0.233 0.767 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.278 0.722 30 H 0.162 0.838 31 H 0.193 0.807 32 H 0.108 0.892 33 H 0.143 0.857 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.295 18.059 -5.595 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.140 4.140 3 C 0.113 3.887 4 N -0.142 5.142 5 C -0.477 4.477 6 H 0.104 0.896 7 C -0.202 4.202 8 N -0.505 5.505 9 Si 0.823 3.177 10 H -0.185 1.185 11 H -0.198 1.198 12 H -0.198 1.198 13 C 0.290 3.710 14 O -0.500 6.500 15 C -0.121 4.121 16 C -0.166 4.166 17 C -0.205 4.205 18 C -0.030 4.030 19 C -0.041 4.041 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.116 4.116 25 O -0.053 6.053 26 H 0.250 0.750 27 H 0.122 0.878 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.180 0.820 31 H 0.211 0.789 32 H 0.126 0.874 33 H 0.160 0.840 34 H 0.174 0.826 35 H 0.179 0.821 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.289 17.608 -5.332 18.689 hybrid contribution 0.112 -1.359 0.647 1.510 sum -3.177 16.249 -4.685 17.207 Atomic orbital electron populations 1.25064 0.96270 1.02459 1.03222 1.23149 0.94604 0.98234 0.98049 1.18447 0.85233 0.87146 0.97919 1.43820 1.52999 1.13307 1.04025 1.19817 1.27672 0.99944 1.00297 0.89632 1.26284 0.94850 1.01048 0.97992 1.70091 1.22431 1.39868 1.18146 0.84828 0.78189 0.77192 0.77499 1.18484 1.19760 1.19841 1.16944 0.85852 0.85921 0.82284 1.90646 1.56712 1.37291 1.65381 1.22577 1.08691 0.86780 0.94073 1.22193 1.02850 0.97766 0.93831 1.21933 1.05242 0.94244 0.99065 1.21452 1.03652 0.90096 0.87830 1.17994 1.02456 0.87988 0.95637 1.21406 0.98970 0.97709 0.95801 1.21355 0.99172 0.92542 1.01011 1.21711 0.97976 1.00577 0.92435 1.21468 0.97997 0.95561 0.98271 1.21386 0.98767 0.93152 0.98281 1.84365 1.64574 1.19464 1.36932 0.75032 0.87818 0.89602 0.91148 0.82012 0.78939 0.87358 0.83956 0.82637 0.82067 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.95 19.25 74.32 1.43 -9.52 16 2 C -0.14 -6.70 10.58 31.13 0.33 -6.37 16 3 C 0.23 11.50 4.75 84.57 0.40 11.91 16 4 N -0.43 -23.68 2.60 -650.29 -1.69 -25.37 16 5 C -0.35 -20.20 9.27 84.11 0.78 -19.42 16 6 H 0.09 5.17 7.43 -2.91 -0.02 5.15 16 7 C 0.00 0.14 5.09 84.96 0.43 0.57 16 8 N -0.87 -45.64 9.11 21.68 0.20 -45.44 16 9 Si 1.00 41.82 29.57 68.60 2.03 43.85 16 10 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 11 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 C 0.50 27.58 7.50 86.36 0.65 28.22 16 14 O -0.61 -37.20 16.59 -4.60 -0.08 -37.27 16 15 C -0.07 -3.16 6.77 24.31 0.16 -2.99 16 16 C -0.15 -5.52 10.66 22.57 0.24 -5.28 16 17 C -0.19 -5.61 10.21 22.26 0.23 -5.39 16 18 C 0.02 0.72 7.02 24.38 0.17 0.89 16 19 C -0.04 -1.10 5.87 -20.10 -0.12 -1.22 16 20 C -0.12 -3.24 9.72 22.54 0.22 -3.02 16 21 C -0.12 -2.43 10.03 22.23 0.22 -2.21 16 22 C -0.11 -1.63 10.04 22.34 0.22 -1.41 16 23 C -0.12 -1.68 10.03 22.23 0.22 -1.46 16 24 C -0.10 -1.90 9.56 22.54 0.22 -1.69 16 25 O -0.16 -6.49 6.31 -10.07 -0.06 -6.56 16 26 H 0.23 7.94 7.80 -4.43 -0.03 7.91 16 27 H 0.10 5.25 6.36 -2.39 -0.02 5.23 16 28 H 0.09 3.90 5.38 -2.38 -0.01 3.89 16 29 H 0.28 13.65 8.31 -92.70 -0.77 12.88 16 30 H 0.16 5.78 8.06 -2.91 -0.02 5.76 16 31 H 0.19 3.91 7.23 -2.91 -0.02 3.89 16 32 H 0.11 3.30 7.90 -2.91 -0.02 3.28 16 33 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 34 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.15 2.16 6.96 -2.91 -0.02 2.14 16 Total: -1.00 -72.37 321.45 7.32 -65.05 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 1.11 Total: 24.12 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 5.81 Total: -18.39 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -1.49 Total: -70.81 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -0.14 Total: -43.83 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -72.37 7.32 -65.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490987092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.898 kcal (2) G-P(sol) polarization free energy of solvation -72.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds