Wall clock time and date at job start Tue Mar 31 2020 07:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47441 * 56.33722 * 3 2 1 5 5 C 1.36865 * 120.00006 * 274.25486 * 4 3 2 6 6 H 1.08000 * 120.00023 * 138.22809 * 5 4 3 7 7 C 1.39050 * 119.99973 * 318.23002 * 5 4 3 8 8 N 1.31369 * 120.00178 * 161.56389 * 7 5 4 9 9 Si 1.86796 * 120.00163 * 341.56429 * 7 5 4 10 10 H 1.48504 * 109.46963 * 89.15431 * 9 7 5 11 11 H 1.48491 * 109.47455 * 209.15658 * 9 7 5 12 12 H 1.48506 * 109.47000 * 329.15822 * 9 7 5 13 13 C 1.34777 * 119.99853 * 94.25286 * 4 3 2 14 14 O 1.21595 * 119.99750 * 185.61370 * 13 4 3 15 15 C 1.47740 * 120.00417 * 5.61982 * 13 4 3 16 16 C 1.39729 * 120.09132 * 309.91557 * 15 13 4 17 17 C 1.37992 * 120.09252 * 180.02562 * 16 15 13 18 18 C 1.38180 * 120.28293 * 359.71942 * 17 16 15 19 19 C 1.39428 * 120.17934 * 0.55550 * 18 17 16 20 20 C 1.48437 * 120.04699 * 179.72020 * 19 18 17 21 21 C 1.46699 * 127.11182 * 359.72451 * 20 19 18 22 22 C 1.34373 * 106.02834 * 180.02562 * 21 20 19 23 23 O 1.34159 * 108.98329 * 359.73755 * 22 21 20 24 24 C 1.34092 * 110.74319 * 0.45149 * 23 22 21 25 25 C 1.39081 * 119.90730 * 359.44682 * 19 18 17 26 26 H 4.40643 * 5.51461 * 180.02562 * 4 1 2 27 27 H 1.08994 * 109.47319 * 296.33186 * 3 2 1 28 28 H 1.09002 * 109.46679 * 176.33082 * 3 2 1 29 29 H 0.96992 * 119.99879 * 179.97438 * 8 7 5 30 30 H 1.08001 * 119.95035 * 0.03917 * 16 15 13 31 31 H 1.08004 * 119.86324 * 180.02562 * 17 16 15 32 32 H 1.07997 * 119.91819 * 180.30331 * 18 17 16 33 33 H 1.08004 * 126.98809 * 0.04613 * 21 20 19 34 34 H 1.07999 * 125.50457 * 179.97438 * 22 21 20 35 35 H 1.07993 * 125.76300 * 179.82059 * 24 23 22 36 36 H 1.07996 * 120.13745 * 180.29088 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7647 -1.1496 5 6 3.2806 -2.1224 -1.0558 6 1 2.9782 -2.7559 -1.8765 7 6 3.8181 -2.6859 0.0962 8 7 3.6341 -3.9615 0.3509 9 14 4.8018 -1.6293 1.2815 10 1 3.8862 -1.0241 2.2819 11 1 5.8081 -2.4711 1.9769 12 1 5.4930 -0.5524 0.5279 13 6 3.4407 -0.1319 -2.2996 14 8 3.7482 -0.7755 -3.2844 15 6 3.4026 1.3436 -2.3636 16 6 2.2790 2.0360 -1.9048 17 6 2.2432 3.4141 -1.9652 18 6 3.3185 4.1175 -2.4733 19 6 4.4432 3.4381 -2.9396 20 6 5.5942 4.1964 -3.4906 21 6 5.7127 5.6526 -3.6235 22 6 6.9193 5.8782 -4.1703 23 8 7.5341 4.7028 -4.3712 24 6 6.7547 3.6856 -3.9764 25 6 4.4876 2.0492 -2.8825 26 1 -1.0499 0.0000 -0.0003 27 1 3.0095 -0.4550 0.9210 28 1 3.0088 1.0264 -0.0658 29 1 4.0093 -4.3546 1.1542 30 1 1.4375 1.4917 -1.5023 31 1 1.3729 3.9455 -1.6091 32 1 3.2861 5.1963 -2.5132 33 1 4.9795 6.3929 -3.3394 34 1 7.3294 6.8491 -4.4060 35 1 7.0091 2.6375 -4.0312 36 1 5.3588 1.5194 -3.2382 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490996252.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:34 Heat of formation + Delta-G solvation = 85.938494 kcal Electronic energy + Delta-G solvation = -22435.940228 eV Core-core repulsion = 19047.530614 eV Total energy + Delta-G solvation = -3388.409614 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.43515 -39.76532 -37.87381 -35.47013 -33.65734 -32.71875 -31.72113 -31.04514 -30.60625 -28.77808 -26.81801 -25.46058 -23.33051 -22.93018 -21.34838 -20.36254 -19.32591 -18.59216 -17.83108 -16.75759 -16.27989 -16.19335 -16.01433 -15.70674 -15.04699 -14.87028 -14.45866 -13.90932 -13.55490 -13.39354 -13.14361 -12.97535 -12.70052 -12.61085 -12.44552 -12.25870 -12.18212 -11.38169 -11.10068 -10.97316 -10.70871 -10.31740 -10.22767 -9.84282 -9.57906 -9.22177 -9.10158 -8.79324 -8.59647 -7.98743 -7.93510 -6.47491 -4.10578 1.00687 1.39866 1.82739 2.62217 2.94124 2.98158 3.10985 3.14370 3.18190 3.29745 3.59201 4.05881 4.06991 4.37527 4.55166 4.64548 4.76146 4.94989 5.04812 5.09449 5.18883 5.32788 5.37485 5.47350 5.54320 5.72027 5.79169 5.94299 5.97986 6.05649 6.15002 6.28572 6.37174 6.53798 6.62686 6.67925 7.00955 7.07456 7.44960 8.04184 8.19053 8.37444 8.81865 9.17366 9.59913 10.63825 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.004653 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.492457 B = 6016.222818 C = 6740.601474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.182 3.818 4 N -0.453 5.453 5 C -0.317 4.317 6 H 0.108 0.892 7 C 0.066 3.934 8 N -0.857 5.857 9 Si 0.868 3.132 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.259 1.259 13 C 0.510 3.490 14 O -0.548 6.548 15 C -0.099 4.099 16 C -0.107 4.107 17 C -0.120 4.120 18 C -0.105 4.105 19 C -0.021 4.021 20 C -0.142 4.142 21 C -0.204 4.204 22 C -0.040 4.040 23 O -0.182 6.182 24 C -0.019 4.019 25 C -0.074 4.074 26 H 0.215 0.785 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.276 0.724 30 H 0.135 0.865 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.151 0.849 34 H 0.202 0.798 35 H 0.208 0.792 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.341 19.649 -1.979 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.173 4.173 3 C 0.060 3.940 4 N -0.173 5.173 5 C -0.444 4.444 6 H 0.125 0.875 7 C -0.141 4.141 8 N -0.492 5.492 9 Si 0.695 3.305 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.183 1.183 13 C 0.298 3.702 14 O -0.429 6.429 15 C -0.102 4.102 16 C -0.126 4.126 17 C -0.138 4.138 18 C -0.123 4.123 19 C -0.021 4.021 20 C -0.143 4.143 21 C -0.223 4.223 22 C -0.106 4.106 23 O -0.078 6.078 24 C -0.087 4.087 25 C -0.093 4.093 26 H 0.232 0.768 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.153 0.847 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.169 0.831 34 H 0.219 0.781 35 H 0.224 0.776 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.856 19.057 -2.480 19.307 hybrid contribution -0.039 0.429 0.953 1.046 sum 1.817 19.486 -1.528 19.630 Atomic orbital electron populations 1.24738 0.95647 1.01899 1.00945 1.23558 0.94761 0.99133 0.99833 1.19132 0.84305 0.97689 0.92912 1.43542 1.56325 1.07504 1.09953 1.19023 1.41640 0.78886 1.04883 0.87478 1.25397 0.95801 0.95608 0.97335 1.69687 1.41126 1.12170 1.26250 0.87125 0.80990 0.81259 0.81131 1.19603 1.20753 1.18259 1.18267 0.81014 0.85776 0.85097 1.90675 1.50633 1.67034 1.34547 1.20261 0.95163 0.94976 0.99815 1.21787 0.98115 0.94528 0.98152 1.20969 0.98497 0.93882 1.00477 1.21125 0.92881 0.99480 0.98823 1.17902 0.92745 0.91842 0.99655 1.20257 0.95329 0.92758 1.05958 1.22804 0.98658 0.94780 1.06101 1.23870 0.93856 0.88605 1.04302 1.83880 1.43130 1.14509 1.66268 1.24229 0.90334 0.92644 1.01452 1.21089 0.98144 0.92339 0.97681 0.76823 0.88927 0.88802 0.91311 0.84711 0.85677 0.86090 0.83129 0.78121 0.77571 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.55 19.03 29.55 0.56 -2.99 16 2 C -0.17 -3.33 11.17 -37.12 -0.41 -3.75 16 3 C 0.18 3.81 4.35 -6.83 -0.03 3.78 16 4 N -0.45 -11.19 2.07 -119.05 -0.25 -11.44 16 5 C -0.32 -9.01 9.29 -15.00 -0.14 -9.15 16 6 H 0.11 3.42 7.94 -52.49 -0.42 3.00 16 7 C 0.07 1.80 5.36 -17.45 -0.09 1.71 16 8 N -0.86 -24.56 13.95 55.50 0.77 -23.78 16 9 Si 0.87 20.03 25.22 -169.99 -4.29 15.75 16 10 H -0.27 -5.74 6.45 56.52 0.36 -5.38 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 13 C 0.51 12.33 7.17 -12.38 -0.09 12.25 16 14 O -0.55 -15.19 16.94 5.28 0.09 -15.10 16 15 C -0.10 -1.91 4.89 -105.01 -0.51 -2.43 16 16 C -0.11 -1.78 7.57 -39.11 -0.30 -2.08 16 17 C -0.12 -1.61 10.02 -39.69 -0.40 -2.01 16 18 C -0.10 -1.36 9.61 -39.16 -0.38 -1.74 16 19 C -0.02 -0.31 5.87 -104.94 -0.62 -0.93 16 20 C -0.14 -1.85 6.24 -103.16 -0.64 -2.49 16 21 C -0.20 -2.14 10.53 -37.53 -0.40 -2.54 16 22 C -0.04 -0.37 12.05 29.37 0.35 -0.01 16 23 O -0.18 -2.08 10.55 6.66 0.07 -2.01 16 24 C -0.02 -0.23 11.53 29.85 0.34 0.11 16 25 C -0.07 -1.27 9.27 -38.82 -0.36 -1.63 16 26 H 0.21 2.59 7.80 -54.10 -0.42 2.17 16 27 H 0.09 2.01 3.17 -51.93 -0.16 1.85 16 28 H 0.09 1.72 5.54 -51.93 -0.29 1.43 16 29 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.14 2.27 4.67 -52.49 -0.25 2.03 16 31 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.12 1.24 7.24 -52.49 -0.38 0.86 16 33 H 0.15 1.24 7.60 -52.48 -0.40 0.84 16 34 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.21 2.13 7.33 -52.49 -0.38 1.75 16 36 H 0.13 2.12 7.08 -52.49 -0.37 1.75 16 LS Contribution 316.14 15.07 4.76 4.76 Total: -1.00 -33.49 316.14 -5.03 -38.52 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -3.09 Total: 7.20 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -3.10 Total: -13.90 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.53 Total: -35.22 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: 0.16 Total: -17.11 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.29 Total: 15.75 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.49 -5.03 -38.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490996252.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.458 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds