Wall clock time and date at job start Tue Mar 31 2020 07:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47441 * 56.33722 * 3 2 1 5 5 C 1.36865 * 120.00006 * 274.25486 * 4 3 2 6 6 H 1.08000 * 120.00023 * 138.22809 * 5 4 3 7 7 C 1.39050 * 119.99973 * 318.23002 * 5 4 3 8 8 N 1.31369 * 120.00178 * 161.56389 * 7 5 4 9 9 Si 1.86796 * 120.00163 * 341.56429 * 7 5 4 10 10 H 1.48504 * 109.46963 * 89.15431 * 9 7 5 11 11 H 1.48491 * 109.47455 * 209.15658 * 9 7 5 12 12 H 1.48506 * 109.47000 * 329.15822 * 9 7 5 13 13 C 1.34777 * 119.99853 * 94.25286 * 4 3 2 14 14 O 1.21595 * 119.99750 * 185.61370 * 13 4 3 15 15 C 1.47740 * 120.00417 * 5.61982 * 13 4 3 16 16 C 1.39729 * 120.09132 * 309.91557 * 15 13 4 17 17 C 1.37992 * 120.09252 * 180.02562 * 16 15 13 18 18 C 1.38180 * 120.28293 * 359.71942 * 17 16 15 19 19 C 1.39428 * 120.17934 * 0.55550 * 18 17 16 20 20 C 1.48437 * 120.04699 * 179.72020 * 19 18 17 21 21 C 1.46699 * 127.11182 * 359.72451 * 20 19 18 22 22 C 1.34373 * 106.02834 * 180.02562 * 21 20 19 23 23 O 1.34159 * 108.98329 * 359.73755 * 22 21 20 24 24 C 1.34092 * 110.74319 * 0.45149 * 23 22 21 25 25 C 1.39081 * 119.90730 * 359.44682 * 19 18 17 26 26 H 4.40643 * 5.51461 * 180.02562 * 4 1 2 27 27 H 1.08994 * 109.47319 * 296.33186 * 3 2 1 28 28 H 1.09002 * 109.46679 * 176.33082 * 3 2 1 29 29 H 0.96992 * 119.99879 * 179.97438 * 8 7 5 30 30 H 1.08001 * 119.95035 * 0.03917 * 16 15 13 31 31 H 1.08004 * 119.86324 * 180.02562 * 17 16 15 32 32 H 1.07997 * 119.91819 * 180.30331 * 18 17 16 33 33 H 1.08004 * 126.98809 * 0.04613 * 21 20 19 34 34 H 1.07999 * 125.50457 * 179.97438 * 22 21 20 35 35 H 1.07993 * 125.76300 * 179.82059 * 24 23 22 36 36 H 1.07996 * 120.13745 * 180.29088 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7647 -1.1496 5 6 3.2806 -2.1224 -1.0558 6 1 2.9782 -2.7559 -1.8765 7 6 3.8181 -2.6859 0.0962 8 7 3.6341 -3.9615 0.3509 9 14 4.8018 -1.6293 1.2815 10 1 3.8862 -1.0241 2.2819 11 1 5.8081 -2.4711 1.9769 12 1 5.4930 -0.5524 0.5279 13 6 3.4407 -0.1319 -2.2996 14 8 3.7482 -0.7755 -3.2844 15 6 3.4026 1.3436 -2.3636 16 6 2.2790 2.0360 -1.9048 17 6 2.2432 3.4141 -1.9652 18 6 3.3185 4.1175 -2.4733 19 6 4.4432 3.4381 -2.9396 20 6 5.5942 4.1964 -3.4906 21 6 5.7127 5.6526 -3.6235 22 6 6.9193 5.8782 -4.1703 23 8 7.5341 4.7028 -4.3712 24 6 6.7547 3.6856 -3.9764 25 6 4.4876 2.0492 -2.8825 26 1 -1.0499 0.0000 -0.0003 27 1 3.0095 -0.4550 0.9210 28 1 3.0088 1.0264 -0.0658 29 1 4.0093 -4.3546 1.1542 30 1 1.4375 1.4917 -1.5023 31 1 1.3729 3.9455 -1.6091 32 1 3.2861 5.1963 -2.5132 33 1 4.9795 6.3929 -3.3394 34 1 7.3294 6.8491 -4.4060 35 1 7.0091 2.6375 -4.0312 36 1 5.3588 1.5194 -3.2382 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490996252.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:34 Heat of formation + Delta-G solvation = 64.618550 kcal Electronic energy + Delta-G solvation = -22436.864730 eV Core-core repulsion = 19047.530614 eV Total energy + Delta-G solvation = -3389.334116 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.26743 -41.35593 -39.32758 -37.34745 -34.91879 -34.32448 -33.45236 -32.21315 -31.68827 -29.74552 -28.49094 -27.32557 -24.50302 -24.26739 -22.39978 -21.32890 -20.76140 -20.25182 -19.00829 -18.47818 -17.87013 -17.60727 -17.16591 -16.85817 -16.43498 -16.23829 -15.76494 -15.37065 -15.09167 -14.84514 -14.59196 -14.30462 -14.11146 -14.01838 -13.78807 -13.70558 -13.18109 -12.97627 -12.72545 -12.50155 -12.17506 -12.00263 -11.46114 -11.36448 -11.16364 -10.98932 -10.59186 -10.00614 -9.93107 -9.89849 -9.03887 -8.59796 -6.30265 -0.13041 0.15535 1.02372 1.10651 1.24132 1.36296 1.57576 1.70734 1.86130 1.89953 2.09640 2.21566 2.70483 2.80727 2.93379 3.52290 3.62659 3.65949 3.82770 3.99407 4.03942 4.16109 4.25131 4.28840 4.35743 4.52600 4.60156 4.79816 4.91709 4.97859 5.06921 5.18580 5.34538 5.42327 5.44552 5.51251 5.56749 5.90083 5.94006 6.21507 6.40023 6.67413 6.76013 7.09047 7.63782 8.56785 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.004653 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.492457 B = 6016.222818 C = 6740.601474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.234 4.234 3 C 0.185 3.815 4 N -0.461 5.461 5 C -0.340 4.340 6 H 0.046 0.954 7 C 0.023 3.977 8 N -0.902 5.902 9 Si 0.934 3.066 10 H -0.233 1.233 11 H -0.274 1.274 12 H -0.257 1.257 13 C 0.505 3.495 14 O -0.605 6.605 15 C -0.126 4.126 16 C -0.113 4.113 17 C -0.105 4.105 18 C -0.088 4.088 19 C -0.018 4.018 20 C -0.166 4.166 21 C -0.211 4.211 22 C -0.031 4.031 23 O -0.192 6.192 24 C -0.033 4.033 25 C -0.090 4.090 26 H 0.260 0.740 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.284 0.716 30 H 0.131 0.869 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.179 0.821 34 H 0.244 0.756 35 H 0.209 0.791 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.583 24.871 -0.468 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.235 4.235 3 C 0.064 3.936 4 N -0.181 5.181 5 C -0.468 4.468 6 H 0.064 0.936 7 C -0.181 4.181 8 N -0.538 5.538 9 Si 0.757 3.243 10 H -0.158 1.158 11 H -0.200 1.200 12 H -0.181 1.181 13 C 0.296 3.704 14 O -0.489 6.489 15 C -0.130 4.130 16 C -0.132 4.132 17 C -0.122 4.122 18 C -0.106 4.106 19 C -0.018 4.018 20 C -0.167 4.167 21 C -0.230 4.230 22 C -0.097 4.097 23 O -0.088 6.088 24 C -0.100 4.100 25 C -0.110 4.110 26 H 0.276 0.724 27 H 0.101 0.899 28 H 0.137 0.863 29 H 0.094 0.906 30 H 0.149 0.851 31 H 0.185 0.815 32 H 0.180 0.820 33 H 0.196 0.804 34 H 0.260 0.740 35 H 0.225 0.775 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.073 24.299 -0.945 24.341 hybrid contribution 0.129 -1.104 0.334 1.161 sum 1.202 23.195 -0.611 23.234 Atomic orbital electron populations 1.25749 0.96443 0.98749 0.97553 1.23520 0.95090 1.02064 1.02864 1.19114 0.85852 0.98069 0.90534 1.43595 1.56790 1.06369 1.11367 1.18595 1.43579 0.80667 1.03921 0.93644 1.26141 0.95958 0.96999 0.99016 1.69793 1.42252 1.14214 1.27582 0.86074 0.79620 0.79440 0.79214 1.15779 1.20027 1.18099 1.19128 0.79172 0.88152 0.83998 1.90611 1.52844 1.69022 1.36443 1.19870 0.97770 0.91587 1.03743 1.21804 0.96873 0.96105 0.98385 1.21375 0.99839 0.92231 0.98763 1.21623 0.91367 1.01462 0.96169 1.18084 0.94113 0.90587 0.98998 1.20409 0.94996 0.94442 1.06884 1.23120 0.99832 0.93550 1.06496 1.24759 0.93431 0.89085 1.02419 1.83895 1.43430 1.15211 1.66268 1.24402 0.90683 0.93257 1.01664 1.21093 0.97494 0.93888 0.98478 0.72432 0.89854 0.86347 0.90616 0.85098 0.81460 0.81977 0.80401 0.73960 0.77492 0.86720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.12 19.03 74.32 1.41 -3.70 16 2 C -0.23 -8.90 11.17 31.13 0.35 -8.55 16 3 C 0.19 7.78 4.35 84.57 0.37 8.15 16 4 N -0.46 -24.05 2.07 -648.82 -1.35 -25.39 16 5 C -0.34 -20.83 9.29 84.10 0.78 -20.04 16 6 H 0.05 3.25 7.94 -2.91 -0.02 3.22 16 7 C 0.02 1.30 5.36 84.96 0.46 1.75 16 8 N -0.90 -54.31 13.95 21.68 0.30 -54.00 16 9 Si 0.93 42.08 25.22 68.60 1.73 43.81 16 10 H -0.23 -9.13 6.45 99.48 0.64 -8.49 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 13 C 0.50 26.09 7.17 86.76 0.62 26.71 16 14 O -0.60 -36.65 16.94 -4.02 -0.07 -36.72 16 15 C -0.13 -5.02 4.89 -20.12 -0.10 -5.12 16 16 C -0.11 -3.59 7.57 22.57 0.17 -3.42 16 17 C -0.10 -2.36 10.02 22.20 0.22 -2.13 16 18 C -0.09 -1.91 9.61 22.54 0.22 -1.69 16 19 C -0.02 -0.48 5.87 -20.07 -0.12 -0.60 16 20 C -0.17 -3.99 6.24 -18.92 -0.12 -4.11 16 21 C -0.21 -3.57 10.53 23.60 0.25 -3.32 16 22 C -0.03 -0.46 12.05 66.94 0.81 0.35 16 23 O -0.19 -4.04 10.55 0.93 0.01 -4.03 16 24 C -0.03 -0.77 11.53 67.25 0.78 0.00 16 25 C -0.09 -3.18 9.27 22.76 0.21 -2.97 16 26 H 0.26 5.06 7.80 -4.42 -0.03 5.02 16 27 H 0.08 3.56 3.17 -2.39 -0.01 3.56 16 28 H 0.12 4.25 5.54 -2.39 -0.01 4.24 16 29 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.13 4.24 4.67 -2.91 -0.01 4.22 16 31 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.16 2.22 7.24 -2.91 -0.02 2.20 16 33 H 0.18 1.90 7.60 -2.91 -0.02 1.88 16 34 H 0.24 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.21 4.55 7.33 -2.91 -0.02 4.53 16 36 H 0.11 4.15 7.08 -2.91 -0.02 4.13 16 Total: -1.00 -82.15 316.14 8.00 -74.16 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 1.06 Total: 20.87 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 6.31 Total: -18.69 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -1.04 Total: -79.39 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.06 Total: -40.75 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.73 Total: 43.81 kcal Total: -82.15 8.00 -74.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490996252.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.775 kcal (2) G-P(sol) polarization free energy of solvation -82.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds