Wall clock time and date at job start Tue Mar 31 2020 07:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47256 * 2 1 4 4 C 1.50702 * 109.46869 * 240.00604 * 2 1 3 5 5 H 1.07995 * 120.00519 * 239.99883 * 4 2 1 6 6 C 1.37876 * 119.99943 * 59.99959 * 4 2 1 7 7 N 1.31519 * 120.00110 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00169 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47082 * 89.99948 * 8 6 4 10 10 H 1.48497 * 109.47219 * 210.00359 * 8 6 4 11 11 H 1.48499 * 109.46892 * 330.00253 * 8 6 4 12 12 N 1.46499 * 109.47130 * 120.00808 * 2 1 3 13 13 C 1.46496 * 120.00159 * 59.99730 * 12 2 1 14 14 C 1.34779 * 119.99784 * 239.99702 * 12 2 1 15 15 O 1.21802 * 120.00082 * 0.02562 * 14 12 2 16 16 C 1.41273 * 119.99590 * 180.02562 * 14 12 2 17 17 C 1.35113 * 119.99872 * 180.02562 * 16 14 12 18 18 S 1.76202 * 119.99843 * 359.97438 * 17 16 14 19 19 C 1.81003 * 100.00119 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.46890 * 180.02562 * 19 18 17 21 21 C 1.34511 * 125.79278 * 90.00235 * 20 19 18 22 22 C 1.41386 * 106.84141 * 180.02562 * 21 20 19 23 23 C 1.34507 * 106.84010 * 0.02562 * 22 21 20 24 24 O 1.34304 * 108.42311 * 359.97438 * 23 22 21 25 25 H 1.08992 * 109.47216 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.46636 * 299.99494 * 1 2 3 27 27 H 1.08996 * 109.47106 * 59.99185 * 1 2 3 28 28 H 0.97002 * 119.99689 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47134 * 270.00257 * 13 12 2 30 30 H 1.09008 * 109.47075 * 29.99756 * 13 12 2 31 31 H 1.08997 * 109.47384 * 149.99827 * 13 12 2 32 32 H 1.07992 * 120.00675 * 359.97438 * 16 14 12 33 33 H 1.07992 * 120.00572 * 179.97438 * 17 16 14 34 34 H 1.08994 * 109.46907 * 60.00162 * 19 18 17 35 35 H 1.09003 * 109.47081 * 299.99866 * 19 18 17 36 36 H 1.08000 * 126.57995 * 0.05173 * 21 20 19 37 37 H 1.08004 * 126.57483 * 179.97438 * 22 21 20 38 38 H 1.08004 * 125.79019 * 180.26381 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1317 6 6 1.6992 -0.2391 -2.4828 7 7 0.9435 0.8305 -2.6033 8 14 2.3211 -1.1199 -4.0082 9 1 1.3425 -2.1612 -4.4121 10 1 2.4864 -0.1408 -5.1124 11 1 3.6290 -1.7580 -3.7125 12 7 2.0183 -0.6908 1.1961 13 6 1.6644 -2.0933 1.4278 14 6 2.7933 -0.0359 2.0833 15 8 3.0872 1.1304 1.8909 16 6 3.2646 -0.7022 3.2364 17 6 4.0410 -0.0456 4.1261 18 16 4.4662 1.6416 3.8478 19 6 5.4771 1.9573 5.3156 20 6 5.9653 3.3828 5.2922 21 6 5.3293 4.4410 5.8260 22 6 6.1371 5.5739 5.5749 23 6 7.2181 5.1402 4.9021 24 8 7.1088 3.8122 4.7339 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 0.7094 1.1622 -3.4843 29 1 0.7376 -2.1446 1.9991 30 1 1.5294 -2.5969 0.4704 31 1 2.4628 -2.5821 1.9860 32 1 3.0037 -1.7361 3.4072 33 1 4.4010 -0.5547 5.0078 34 1 6.3313 1.2803 5.3208 35 1 4.8781 1.7934 6.2114 36 1 4.3833 4.4278 6.3469 37 1 5.9261 6.5922 5.8665 38 1 8.0375 5.7549 4.5597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492060736.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:13 Heat of formation + Delta-G solvation = 12.528129 kcal Electronic energy + Delta-G solvation = -20643.373331 eV Core-core repulsion = 17387.224355 eV Total energy + Delta-G solvation = -3256.148975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.61825 -39.29896 -35.45783 -33.26988 -33.07549 -32.35271 -31.97378 -29.33721 -26.84872 -26.13657 -25.19992 -23.79002 -21.84169 -20.89763 -20.18760 -18.47631 -17.39792 -17.21118 -16.42493 -16.30300 -15.77386 -14.92163 -14.77194 -14.47338 -14.25252 -14.00251 -13.80181 -13.07983 -12.90950 -12.79324 -12.54612 -12.44142 -12.31016 -12.00623 -11.54863 -11.23025 -11.03001 -10.81171 -10.73211 -10.46343 -10.26911 -10.14148 -10.11568 -9.98505 -9.14102 -8.84562 -8.42467 -8.22704 -7.75469 -7.14419 -6.03995 -4.12033 1.23668 1.36888 2.07171 2.52084 2.73861 2.89503 3.28295 3.35542 3.38628 3.97656 4.13285 4.43751 4.48800 4.79428 4.92987 5.03300 5.09455 5.25030 5.26903 5.49165 5.70459 5.81847 5.83946 5.97982 6.00718 6.07993 6.13141 6.39016 6.41545 6.79779 6.88199 7.03246 7.10820 7.46789 7.58294 7.75063 8.05305 8.23605 8.56542 8.85120 9.05716 9.54189 11.01132 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020398 B = 0.003350 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.333235 B = 8355.399527 C = 9012.964979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.586 5.586 13 C 0.083 3.917 14 C 0.524 3.476 15 O -0.529 6.529 16 C -0.200 4.200 17 C -0.122 4.122 18 S 0.060 5.940 19 C -0.118 4.118 20 C 0.011 3.989 21 C -0.197 4.197 22 C -0.214 4.214 23 C -0.039 4.039 24 O -0.172 6.172 25 H 0.029 0.971 26 H 0.011 0.989 27 H 0.093 0.907 28 H 0.263 0.737 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.623 0.956 17.494 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.316 5.316 13 C -0.060 4.060 14 C 0.314 3.686 15 O -0.413 6.413 16 C -0.236 4.236 17 C -0.258 4.258 18 S 0.305 5.695 19 C -0.264 4.264 20 C -0.040 4.040 21 C -0.219 4.219 22 C -0.233 4.233 23 C -0.108 4.108 24 O -0.068 6.068 25 H 0.048 0.952 26 H 0.030 0.970 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.662 2.285 16.245 18.106 hybrid contribution 0.438 -1.467 0.306 1.562 sum 8.100 0.818 16.551 18.445 Atomic orbital electron populations 1.22078 0.98223 0.99340 1.00782 1.18935 0.90846 0.94593 0.79931 0.91785 1.21327 1.31771 1.12992 0.90338 0.92273 1.24893 0.94971 0.94973 0.98937 1.69887 1.36412 1.22534 1.23708 0.86500 0.79180 0.79294 0.82457 1.20653 1.21097 1.19930 1.48081 1.48510 1.11513 1.23453 1.21640 0.98748 0.83311 1.02350 1.17051 0.80473 0.86943 0.84095 1.90576 1.58296 1.16849 1.75541 1.21838 1.03481 1.01436 0.96826 1.25965 0.99364 0.99326 1.01149 1.88425 1.55048 1.05482 1.20543 1.22716 1.04660 0.92188 1.06806 1.21367 0.86936 0.95289 1.00431 1.21583 1.02211 0.91642 1.06463 1.21828 0.96119 1.00247 1.05110 1.24043 1.01864 0.81165 1.03678 1.84021 1.37240 1.23665 1.61911 0.95227 0.97014 0.88871 0.92714 0.93873 0.90116 0.92627 0.84480 0.84325 0.88512 0.87446 0.83276 0.83353 0.78029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.97 37.16 0.33 -3.22 16 2 C 0.26 6.68 2.64 -69.08 -0.18 6.50 16 3 H 0.06 1.93 6.90 -51.93 -0.36 1.57 16 4 C -0.53 -14.38 7.99 -34.44 -0.28 -14.65 16 5 H 0.06 1.59 7.33 -52.49 -0.38 1.21 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.59 -12.74 2.75 -178.79 -0.49 -13.24 16 13 C 0.08 1.41 9.12 59.84 0.55 1.95 16 14 C 0.52 11.07 7.42 -15.11 -0.11 10.96 16 15 O -0.53 -12.95 12.66 5.10 0.06 -12.88 16 16 C -0.20 -3.14 9.10 -39.54 -0.36 -3.50 16 17 C -0.12 -1.67 10.09 29.62 0.30 -1.37 16 18 S 0.06 0.95 18.59 -107.50 -2.00 -1.05 16 19 C -0.12 -1.36 6.20 36.00 0.22 -1.13 16 20 C 0.01 0.14 6.58 -35.63 -0.23 -0.09 16 21 C -0.20 -2.36 10.81 -39.70 -0.43 -2.79 16 22 C -0.21 -2.30 10.91 -39.70 -0.43 -2.73 16 23 C -0.04 -0.41 12.09 29.41 0.36 -0.06 16 24 O -0.17 -2.30 10.65 5.70 0.06 -2.24 16 25 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 26 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 27 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.45 7.02 -51.92 -0.36 1.08 16 31 H 0.06 0.76 6.08 -51.93 -0.32 0.44 16 32 H 0.14 1.70 6.08 -52.49 -0.32 1.38 16 33 H 0.14 1.30 8.03 -52.49 -0.42 0.88 16 34 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.11 0.97 8.14 -51.91 -0.42 0.55 16 36 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 38 H 0.20 1.32 8.06 -52.48 -0.42 0.89 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -33.03 334.26 -7.06 -40.09 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.97 Total: 1.28 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -0.36 Total: -8.45 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.14 Total: -38.00 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.13 Total: -15.13 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.00 Total: -1.05 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.03 -7.06 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492060736.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.616 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds