Wall clock time and date at job start Tue Mar 31 2020 07:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46742 * 2 1 4 4 C 1.50704 * 109.46809 * 119.99625 * 2 1 3 5 5 H 1.07997 * 119.99992 * 120.00281 * 4 2 1 6 6 C 1.37877 * 119.99718 * 299.99901 * 4 2 1 7 7 N 1.31512 * 120.00664 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99699 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46904 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47041 * 119.99991 * 8 6 4 11 11 H 1.48498 * 109.47061 * 240.00051 * 8 6 4 12 12 N 1.46499 * 109.47248 * 239.99434 * 2 1 3 13 13 C 1.46496 * 120.00159 * 300.00232 * 12 2 1 14 14 C 1.34779 * 119.99784 * 120.00204 * 12 2 1 15 15 O 1.21802 * 120.00082 * 0.02562 * 14 12 2 16 16 C 1.41273 * 119.99590 * 180.02562 * 14 12 2 17 17 C 1.35113 * 119.99872 * 180.02562 * 16 14 12 18 18 S 1.76202 * 119.99843 * 359.97438 * 17 16 14 19 19 C 1.81003 * 100.00119 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.46890 * 180.02562 * 19 18 17 21 21 C 1.34511 * 125.79278 * 90.00235 * 20 19 18 22 22 C 1.41386 * 106.84141 * 180.02562 * 21 20 19 23 23 C 1.34507 * 106.84010 * 0.02562 * 22 21 20 24 24 O 1.34304 * 108.42311 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.47255 * 300.00592 * 1 2 3 26 26 H 1.09006 * 109.47239 * 60.00552 * 1 2 3 27 27 H 1.09002 * 109.47442 * 180.02562 * 1 2 3 28 28 H 0.96994 * 120.00662 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47134 * 270.00257 * 13 12 2 30 30 H 1.09008 * 109.47075 * 29.99756 * 13 12 2 31 31 H 1.08997 * 109.47384 * 149.99827 * 13 12 2 32 32 H 1.07992 * 120.00675 * 359.97438 * 16 14 12 33 33 H 1.07992 * 120.00572 * 179.97438 * 17 16 14 34 34 H 1.08994 * 109.46907 * 60.00162 * 19 18 17 35 35 H 1.09003 * 109.47081 * 299.99866 * 19 18 17 36 36 H 1.08000 * 126.57995 * 0.05173 * 21 20 19 37 37 H 1.08004 * 126.57483 * 179.97438 * 22 21 20 38 38 H 1.08004 * 125.79019 * 180.26381 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.1471 -2.2861 3.6040 10 1 3.1470 -0.1855 4.8162 11 1 1.1676 -1.5862 4.8166 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4278 14 6 2.7933 -0.0358 -2.0833 15 8 3.0879 1.1302 -1.8903 16 6 3.2637 -0.7017 -3.2369 17 6 4.0410 -0.0453 -4.1261 18 16 4.4672 1.6414 -3.8470 19 6 5.4777 1.9573 -5.3151 20 6 5.9678 3.3822 -5.2905 21 6 7.1144 3.8102 -4.7325 22 6 7.1740 5.2076 -4.9395 23 6 6.0601 5.5499 -5.6111 24 8 5.3332 4.4402 -5.8211 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 0.7080 1.1611 3.4843 29 1 2.4157 -2.7378 -0.9714 30 1 0.6904 -2.3003 -0.9844 31 1 1.6238 -2.2854 -2.5000 32 1 3.0029 -1.7356 -3.4078 33 1 4.4010 -0.5544 -5.0078 34 1 4.8783 1.7943 -6.2107 35 1 6.3316 1.2799 -5.3211 36 1 7.8488 3.2029 -4.2242 37 1 7.9624 5.8725 -4.6190 38 1 5.7971 6.5472 -5.9316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492060742.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:14 Heat of formation + Delta-G solvation = -7.227471 kcal Electronic energy + Delta-G solvation = -20643.992210 eV Core-core repulsion = 17386.986568 eV Total energy + Delta-G solvation = -3257.005642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.49926 -40.87435 -37.22624 -34.86848 -34.16035 -33.81232 -32.85545 -31.21253 -27.74811 -27.61666 -27.28337 -25.23945 -22.71967 -22.27465 -21.42824 -19.89688 -18.76280 -18.32676 -18.22475 -17.46675 -17.25198 -16.54337 -16.07773 -15.76314 -15.64527 -15.22084 -14.90719 -14.48059 -14.41461 -13.97783 -13.77424 -13.66914 -13.47311 -13.39232 -13.07814 -12.96970 -12.71484 -12.68433 -12.37502 -12.17694 -12.12757 -11.62277 -11.43726 -11.14333 -10.88509 -10.55227 -10.11693 -9.37991 -9.26701 -8.48432 -8.12335 -6.30167 0.17286 0.22847 1.12388 1.40387 1.42012 1.52585 1.53900 1.82804 2.06425 2.35859 2.53335 2.66282 3.14070 3.65539 3.94071 4.02189 4.10632 4.29955 4.33916 4.42460 4.59218 4.67280 4.82083 4.88314 4.88980 4.96304 4.98099 4.99203 5.08680 5.11277 5.16322 5.48889 5.56776 5.67821 5.71293 6.07426 6.15438 6.18409 6.78450 6.90517 7.34209 7.52365 8.90962 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020520 B = 0.003343 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.193765 B = 8374.159806 C = 9018.256395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.263 3.737 3 H 0.007 0.993 4 C -0.537 4.537 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.265 1.265 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.600 5.600 13 C 0.083 3.917 14 C 0.510 3.490 15 O -0.580 6.580 16 C -0.222 4.222 17 C -0.081 4.081 18 S -0.039 6.039 19 C -0.089 4.089 20 C -0.019 4.019 21 C -0.205 4.205 22 C -0.229 4.229 23 C -0.039 4.039 24 O -0.193 6.193 25 H 0.066 0.934 26 H 0.018 0.982 27 H 0.048 0.952 28 H 0.264 0.736 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.178 0.822 33 H 0.193 0.807 34 H 0.115 0.885 35 H 0.135 0.865 36 H 0.159 0.841 37 H 0.171 0.829 38 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.350 -1.038 -19.065 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.025 0.975 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.329 5.329 13 C -0.059 4.059 14 C 0.303 3.697 15 O -0.466 6.466 16 C -0.256 4.256 17 C -0.216 4.216 18 S 0.208 5.792 19 C -0.235 4.235 20 C -0.069 4.069 21 C -0.227 4.227 22 C -0.248 4.248 23 C -0.107 4.107 24 O -0.090 6.090 25 H 0.085 0.915 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.195 0.805 33 H 0.210 0.790 34 H 0.133 0.867 35 H 0.153 0.847 36 H 0.177 0.823 37 H 0.188 0.812 38 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 8.883 0.417 -18.141 20.204 hybrid contribution 0.531 -0.850 0.379 1.071 sum 9.414 -0.433 -17.762 20.107 Atomic orbital electron populations 1.21878 0.97338 1.00067 0.99809 1.18473 0.91473 0.92155 0.81889 0.97506 1.21622 1.31708 1.12933 0.91252 0.92281 1.25759 0.95122 0.95664 1.02075 1.70034 1.37438 1.23987 1.24301 0.85399 0.78232 0.78477 0.78850 1.18885 1.21160 1.19890 1.48085 1.49097 1.13322 1.22437 1.21839 1.01271 0.80359 1.02398 1.17961 0.79778 0.86670 0.85309 1.90599 1.59821 1.19092 1.77114 1.21805 1.05336 1.03130 0.95359 1.26339 0.96755 0.96923 1.01632 1.88854 1.57118 1.09091 1.24137 1.22588 1.05607 0.91080 1.04203 1.21689 0.93884 0.88736 1.02611 1.21942 0.99388 0.96459 1.04934 1.22213 1.01502 0.95742 1.05297 1.24850 0.92104 0.90918 1.02795 1.84003 1.46085 1.16096 1.62851 0.91481 0.96302 0.93300 0.92699 0.92797 0.91374 0.88280 0.80532 0.78954 0.86687 0.84739 0.82308 0.81165 0.74513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.62 8.95 71.98 0.64 -5.98 16 2 C 0.26 14.18 2.64 44.25 0.12 14.30 16 3 H 0.01 0.45 6.90 -2.38 -0.02 0.43 16 4 C -0.54 -30.11 8.37 25.60 0.21 -29.90 16 5 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -54.35 11.32 21.45 0.24 -54.11 16 8 Si 0.97 44.05 29.54 68.60 2.03 46.07 16 9 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 N -0.60 -26.30 2.75 -837.74 -2.31 -28.61 16 13 C 0.08 2.66 9.36 127.77 1.20 3.86 16 14 C 0.51 21.77 7.42 84.99 0.63 22.40 16 15 O -0.58 -29.88 12.66 -4.67 -0.06 -29.94 16 16 C -0.22 -6.43 9.10 22.30 0.20 -6.23 16 17 C -0.08 -1.97 10.09 67.10 0.68 -1.30 16 18 S -0.04 -1.23 18.59 -56.49 -1.05 -2.28 16 19 C -0.09 -1.86 6.20 71.23 0.44 -1.42 16 20 C -0.02 -0.46 6.58 24.83 0.16 -0.30 16 21 C -0.21 -4.79 10.81 22.19 0.24 -4.55 16 22 C -0.23 -4.64 10.91 22.19 0.24 -4.40 16 23 C -0.04 -0.76 12.09 66.97 0.81 0.05 16 24 O -0.19 -4.96 10.65 -2.51 -0.03 -4.99 16 25 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 26 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.05 2.20 6.66 -2.39 -0.02 2.18 16 28 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 30 H 0.07 2.21 6.43 -2.38 -0.02 2.20 16 31 H 0.10 2.23 6.08 -2.39 -0.01 2.22 16 32 H 0.18 3.58 6.08 -2.91 -0.02 3.56 16 33 H 0.19 2.51 8.03 -2.91 -0.02 2.48 16 34 H 0.11 1.96 8.14 -2.40 -0.02 1.94 16 35 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 37 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.24 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -77.96 333.57 5.92 -72.05 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 1.06 Total: 14.07 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 6.03 Total: -12.27 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -2.06 Total: -82.72 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.09 Total: -34.93 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -1.23 SS G_CDS: -1.05 Total: -2.28 kcal Total: -77.96 5.92 -72.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492060742.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.819 kcal (2) G-P(sol) polarization free energy of solvation -77.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds