Wall clock time and date at job start Tue Mar 31 2020 07:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 N 1.46499 * 109.47111 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99997 * 274.41317 * 4 3 2 6 6 H 1.07996 * 119.99811 * 134.05800 * 5 4 3 7 7 C 1.38960 * 119.99700 * 314.06118 * 5 4 3 8 8 N 1.31435 * 120.00383 * 3.51281 * 7 5 4 9 9 Si 1.86806 * 119.99817 * 183.51484 * 7 5 4 10 10 H 1.48505 * 109.46881 * 59.99485 * 9 7 5 11 11 H 1.48497 * 109.46965 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47084 * 300.00049 * 9 7 5 13 13 C 1.34777 * 120.00490 * 94.41673 * 4 3 2 14 14 O 1.21844 * 119.99475 * 4.69628 * 13 4 3 15 15 C 1.41158 * 120.00408 * 184.70038 * 13 4 3 16 16 C 1.35216 * 120.00079 * 175.38030 * 15 13 4 17 17 S 1.76197 * 120.00249 * 0.02562 * 16 15 13 18 18 C 1.80998 * 100.00461 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47490 * 180.02562 * 18 17 16 20 20 C 1.34503 * 125.79355 * 89.99665 * 19 18 17 21 21 C 1.41384 * 106.84498 * 180.02562 * 20 19 18 22 22 C 1.34512 * 106.83611 * 359.97438 * 21 20 19 23 23 O 1.34298 * 108.42207 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.47045 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46967 * 300.00230 * 1 2 3 26 26 H 1.09007 * 109.47143 * 60.00003 * 1 2 3 27 27 H 1.09005 * 109.46686 * 240.00197 * 2 1 3 28 28 H 1.08998 * 109.47157 * 120.00585 * 2 1 3 29 29 H 1.08994 * 109.47060 * 60.00055 * 3 2 1 30 30 H 1.09007 * 109.47067 * 300.00043 * 3 2 1 31 31 H 0.96999 * 120.00335 * 180.02562 * 8 7 5 32 32 H 1.07998 * 119.99620 * 355.38061 * 15 13 4 33 33 H 1.08009 * 120.00222 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.47283 * 59.99158 * 18 17 16 35 35 H 1.09004 * 109.46596 * 300.00283 * 18 17 16 36 36 H 1.08002 * 126.58079 * 0.05635 * 20 19 18 37 37 H 1.07998 * 126.57975 * 180.02562 * 21 20 19 38 38 H 1.07998 * 125.78661 * 180.26227 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.3510 1.1815 6 1 5.0235 0.6699 1.2714 7 6 3.8133 2.1346 2.2654 8 7 2.7573 2.9123 2.1786 9 14 4.8074 2.0826 3.8461 10 1 6.2037 2.5042 3.5668 11 1 4.2025 3.0034 4.8418 12 1 4.8068 0.6992 4.3860 13 6 4.1785 1.5325 -1.1646 14 8 3.5719 1.6999 -2.2079 15 6 5.5865 1.4327 -1.1749 16 6 6.2554 1.4292 -2.3500 17 16 5.3697 1.5498 -3.8684 18 6 6.7472 1.4947 -5.0412 19 6 6.2136 1.5864 -6.4476 20 6 6.0135 2.7217 -7.1406 21 6 5.5064 2.3455 -8.4056 22 6 5.4276 1.0027 -8.4102 23 8 5.8570 0.5484 -7.2215 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 2.4944 3.4596 2.9350 32 1 6.1295 1.3592 -0.2442 33 1 7.3328 1.3533 -2.3580 34 1 7.2913 0.5582 -4.9189 35 1 7.4187 2.3323 -4.8524 36 1 6.2041 3.7277 -6.7969 37 1 5.2353 3.0090 -9.2136 38 1 5.0816 0.3932 -9.2318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492083535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:55 Heat of formation + Delta-G solvation = 2.889654 kcal Electronic energy + Delta-G solvation = -20730.358711 eV Core-core repulsion = 17473.791780 eV Total energy + Delta-G solvation = -3256.566931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.50182 -38.84023 -35.32031 -33.12979 -32.89157 -32.01119 -31.74369 -31.17603 -26.72172 -26.02339 -24.88473 -22.43314 -21.72375 -20.67048 -20.15891 -19.09344 -17.58023 -17.09745 -16.34697 -16.14852 -15.05636 -14.89361 -14.60440 -14.27515 -14.06495 -13.82679 -13.64077 -13.33290 -12.91910 -12.79203 -12.66113 -12.39426 -12.10046 -11.64495 -11.52836 -11.29620 -11.21794 -10.91078 -10.69616 -10.36387 -10.24366 -10.11874 -9.89003 -9.75890 -9.63528 -9.08869 -8.56906 -7.97048 -7.56415 -6.84853 -6.29333 -4.21860 1.47013 1.87361 2.29559 2.77725 3.00681 3.06268 3.11302 3.16597 3.17392 4.03209 4.43888 4.65227 4.90477 4.96494 5.00508 5.04339 5.24897 5.47417 5.61148 5.81410 5.86878 5.92030 5.94224 6.10449 6.14837 6.37242 6.50718 6.56092 6.59221 6.69560 6.76870 6.85160 6.90578 7.15435 7.23831 7.29468 7.68667 8.02447 8.36778 9.01339 9.45048 9.89811 10.60974 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021544 B = 0.003583 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.363697 B = 7813.362313 C = 8695.376073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.095 3.905 4 N -0.426 5.426 5 C -0.336 4.336 6 H 0.087 0.913 7 C 0.047 3.953 8 N -0.865 5.865 9 Si 0.921 3.079 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.486 3.514 14 O -0.576 6.576 15 C -0.147 4.147 16 C -0.158 4.158 17 S 0.040 5.960 18 C -0.119 4.119 19 C 0.019 3.981 20 C -0.202 4.202 21 C -0.213 4.213 22 C -0.045 4.045 23 O -0.173 6.173 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.125 0.875 30 H 0.053 0.947 31 H 0.271 0.729 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.603 -2.500 -10.981 12.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C -0.028 4.028 4 N -0.142 5.142 5 C -0.465 4.465 6 H 0.105 0.895 7 C -0.159 4.159 8 N -0.502 5.502 9 Si 0.747 3.253 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.198 1.198 13 C 0.279 3.721 14 O -0.467 6.467 15 C -0.181 4.181 16 C -0.293 4.293 17 S 0.282 5.718 18 C -0.265 4.265 19 C -0.032 4.032 20 C -0.224 4.224 21 C -0.232 4.232 22 C -0.114 4.114 23 O -0.070 6.070 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.158 0.842 33 H 0.149 0.851 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.061 -2.491 -11.518 12.465 hybrid contribution 1.936 0.057 1.199 2.278 sum 5.997 -2.433 -10.320 12.181 Atomic orbital electron populations 1.21647 0.96671 1.00269 1.01393 1.21781 0.94603 0.99507 1.00896 1.21862 0.81514 0.94813 1.04626 1.43296 1.05099 1.61188 1.04590 1.19360 1.15153 1.22717 0.89220 0.89495 1.25588 0.96082 0.94267 0.99958 1.69564 1.23380 1.25180 1.32070 0.86093 0.79966 0.78369 0.80825 1.19606 1.20764 1.19752 1.17236 0.88050 0.82016 0.84816 1.90461 1.68719 1.56174 1.31306 1.21890 0.95934 1.02904 0.97363 1.25750 1.01675 1.04668 0.97200 1.88110 1.02235 1.88738 0.92714 1.22723 1.04939 1.06146 0.92647 1.21484 1.03542 0.85312 0.92855 1.21564 1.06930 0.99066 0.94851 1.21808 1.06888 0.95335 0.99174 1.23987 1.04437 0.95155 0.87778 1.84014 1.63882 1.35899 1.23161 0.93804 0.92875 0.93260 0.93619 0.92336 0.85738 0.92865 0.91762 0.84186 0.85081 0.88975 0.87753 0.83342 0.83502 0.78198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.91 37.16 0.37 -2.12 16 2 C -0.13 -2.73 6.24 -26.73 -0.17 -2.89 16 3 C 0.10 2.31 5.15 -4.04 -0.02 2.29 16 4 N -0.43 -10.78 2.52 -118.19 -0.30 -11.07 16 5 C -0.34 -8.36 8.19 -15.00 -0.12 -8.48 16 6 H 0.09 2.04 6.98 -52.49 -0.37 1.67 16 7 C 0.05 1.15 5.40 -17.45 -0.09 1.06 16 8 N -0.87 -22.40 10.74 55.50 0.60 -21.80 16 9 Si 0.92 18.93 29.55 -169.99 -5.02 13.90 16 10 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 11 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 C 0.49 11.99 7.37 -15.15 -0.11 11.88 16 14 O -0.58 -15.08 12.85 5.06 0.07 -15.02 16 15 C -0.15 -3.05 9.17 -39.55 -0.36 -3.41 16 16 C -0.16 -2.78 10.09 29.66 0.30 -2.49 16 17 S 0.04 0.74 18.60 -107.50 -2.00 -1.26 16 18 C -0.12 -1.65 6.20 36.01 0.22 -1.42 16 19 C 0.02 0.28 6.58 -35.63 -0.23 0.04 16 20 C -0.20 -2.70 10.81 -39.71 -0.43 -3.13 16 21 C -0.21 -2.48 10.91 -39.70 -0.43 -2.91 16 22 C -0.05 -0.51 12.09 29.42 0.36 -0.16 16 23 O -0.17 -2.50 10.65 5.72 0.06 -2.44 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.13 3.21 5.15 -51.93 -0.27 2.95 16 30 H 0.05 1.35 7.24 -51.92 -0.38 0.97 16 31 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.14 2.73 6.52 -52.49 -0.34 2.39 16 33 H 0.13 1.80 8.03 -52.48 -0.42 1.37 16 34 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 35 H 0.10 1.23 8.14 -51.91 -0.42 0.81 16 36 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.20 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 337.75 15.07 5.09 5.09 Total: -1.00 -29.59 337.75 -7.38 -36.97 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.14 Total: 7.37 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -0.73 Total: -11.73 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.30 Total: -32.88 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.13 Total: -17.46 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.90 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.00 Total: -1.26 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.59 -7.38 -36.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492083535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.859 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds