Wall clock time and date at job start Tue Mar 31 2020 07:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 N 1.46499 * 109.47111 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99997 * 274.41317 * 4 3 2 6 6 H 1.07996 * 119.99811 * 134.05800 * 5 4 3 7 7 C 1.38960 * 119.99700 * 314.06118 * 5 4 3 8 8 N 1.31435 * 120.00383 * 3.51281 * 7 5 4 9 9 Si 1.86806 * 119.99817 * 183.51484 * 7 5 4 10 10 H 1.48505 * 109.46881 * 59.99485 * 9 7 5 11 11 H 1.48497 * 109.46965 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47084 * 300.00049 * 9 7 5 13 13 C 1.34777 * 120.00490 * 94.41673 * 4 3 2 14 14 O 1.21844 * 119.99475 * 4.69628 * 13 4 3 15 15 C 1.41158 * 120.00408 * 184.70038 * 13 4 3 16 16 C 1.35216 * 120.00079 * 175.38030 * 15 13 4 17 17 S 1.76197 * 120.00249 * 0.02562 * 16 15 13 18 18 C 1.80998 * 100.00461 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47490 * 180.02562 * 18 17 16 20 20 C 1.34503 * 125.79355 * 89.99665 * 19 18 17 21 21 C 1.41384 * 106.84498 * 180.02562 * 20 19 18 22 22 C 1.34512 * 106.83611 * 359.97438 * 21 20 19 23 23 O 1.34298 * 108.42207 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.47045 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46967 * 300.00230 * 1 2 3 26 26 H 1.09007 * 109.47143 * 60.00003 * 1 2 3 27 27 H 1.09005 * 109.46686 * 240.00197 * 2 1 3 28 28 H 1.08998 * 109.47157 * 120.00585 * 2 1 3 29 29 H 1.08994 * 109.47060 * 60.00055 * 3 2 1 30 30 H 1.09007 * 109.47067 * 300.00043 * 3 2 1 31 31 H 0.96999 * 120.00335 * 180.02562 * 8 7 5 32 32 H 1.07998 * 119.99620 * 355.38061 * 15 13 4 33 33 H 1.08009 * 120.00222 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.47283 * 59.99158 * 18 17 16 35 35 H 1.09004 * 109.46596 * 300.00283 * 18 17 16 36 36 H 1.08002 * 126.58079 * 0.05635 * 20 19 18 37 37 H 1.07998 * 126.57975 * 180.02562 * 21 20 19 38 38 H 1.07998 * 125.78661 * 180.26227 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.3510 1.1815 6 1 5.0235 0.6699 1.2714 7 6 3.8133 2.1346 2.2654 8 7 2.7573 2.9123 2.1786 9 14 4.8074 2.0826 3.8461 10 1 6.2037 2.5042 3.5668 11 1 4.2025 3.0034 4.8418 12 1 4.8068 0.6992 4.3860 13 6 4.1785 1.5325 -1.1646 14 8 3.5719 1.6999 -2.2079 15 6 5.5865 1.4327 -1.1749 16 6 6.2554 1.4292 -2.3500 17 16 5.3697 1.5498 -3.8684 18 6 6.7472 1.4947 -5.0412 19 6 6.2136 1.5864 -6.4476 20 6 6.0135 2.7217 -7.1406 21 6 5.5064 2.3455 -8.4056 22 6 5.4276 1.0027 -8.4102 23 8 5.8570 0.5484 -7.2215 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 2.4944 3.4596 2.9350 32 1 6.1295 1.3592 -0.2442 33 1 7.3328 1.3533 -2.3580 34 1 7.2913 0.5582 -4.9189 35 1 7.4187 2.3323 -4.8524 36 1 6.2041 3.7277 -6.7969 37 1 5.2353 3.0090 -9.2136 38 1 5.0816 0.3932 -9.2318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492083535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:55 Heat of formation + Delta-G solvation = -12.714801 kcal Electronic energy + Delta-G solvation = -20731.035371 eV Core-core repulsion = 17473.791780 eV Total energy + Delta-G solvation = -3257.243591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.47888 -40.65843 -37.15068 -34.61587 -34.13756 -33.62345 -32.93480 -32.80817 -27.95544 -27.56714 -26.69006 -24.01099 -22.68922 -22.11027 -21.52686 -20.81954 -19.12214 -18.31995 -17.97768 -17.31576 -16.68607 -16.62394 -15.82327 -15.70651 -15.66376 -15.49018 -14.94402 -14.82531 -14.33591 -14.08150 -13.74908 -13.62614 -13.34142 -13.27209 -13.14560 -12.88672 -12.76203 -12.54806 -12.33157 -12.03708 -11.94292 -11.62002 -11.45493 -11.27951 -10.91907 -10.83420 -10.02331 -9.42943 -9.22280 -8.41201 -8.12298 -6.13752 0.29915 0.32195 1.18798 1.48995 1.51207 1.58879 1.62171 1.87465 2.08898 2.32348 2.64658 3.13019 3.22363 3.69105 4.04169 4.13001 4.17067 4.24247 4.32204 4.36758 4.45436 4.57140 4.73592 4.88786 4.90981 5.00483 5.00745 5.11983 5.14784 5.18483 5.24545 5.26043 5.41448 5.47124 5.59561 5.75625 6.16667 6.18328 6.48665 7.13704 7.60418 8.05552 8.76880 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021544 B = 0.003583 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.363697 B = 7813.362313 C = 8695.376073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.097 3.903 4 N -0.446 5.446 5 C -0.349 4.349 6 H 0.097 0.903 7 C 0.002 3.998 8 N -0.900 5.900 9 Si 0.991 3.009 10 H -0.262 1.262 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.475 3.525 14 O -0.607 6.607 15 C -0.190 4.190 16 C -0.111 4.111 17 S -0.031 6.031 18 C -0.093 4.093 19 C -0.015 4.015 20 C -0.206 4.206 21 C -0.226 4.226 22 C -0.039 4.039 23 O -0.194 6.194 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.052 0.948 29 H 0.110 0.890 30 H 0.029 0.971 31 H 0.271 0.729 32 H 0.150 0.850 33 H 0.179 0.821 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.158 0.842 37 H 0.173 0.827 38 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.412 -3.120 -11.908 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C -0.027 4.027 4 N -0.163 5.163 5 C -0.477 4.477 6 H 0.115 0.885 7 C -0.200 4.200 8 N -0.538 5.538 9 Si 0.814 3.186 10 H -0.186 1.186 11 H -0.211 1.211 12 H -0.189 1.189 13 C 0.269 3.731 14 O -0.498 6.498 15 C -0.224 4.224 16 C -0.246 4.246 17 S 0.213 5.787 18 C -0.239 4.239 19 C -0.066 4.066 20 C -0.228 4.228 21 C -0.245 4.245 22 C -0.107 4.107 23 O -0.091 6.091 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.128 0.872 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.168 0.832 33 H 0.196 0.804 34 H 0.127 0.873 35 H 0.147 0.853 36 H 0.176 0.824 37 H 0.190 0.810 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 5.871 -3.121 -12.448 14.113 hybrid contribution 1.425 0.270 1.152 1.852 sum 7.297 -2.851 -11.296 13.746 Atomic orbital electron populations 1.21596 0.93785 1.02170 1.01639 1.21663 0.97098 0.97095 0.99878 1.21768 0.81997 0.96395 1.02501 1.43545 1.05292 1.62189 1.05249 1.19692 1.15474 1.23157 0.89350 0.88526 1.26454 0.96824 0.93664 1.03084 1.69708 1.24895 1.26177 1.33010 0.85026 0.78576 0.78464 0.76519 1.18630 1.21066 1.18911 1.17868 0.89750 0.81261 0.84201 1.90472 1.70180 1.57092 1.32094 1.21747 0.94070 1.07522 0.99043 1.26144 1.03556 0.99504 0.95395 1.88371 1.06956 1.88018 0.95336 1.22570 1.02455 1.08125 0.90721 1.21627 1.05711 0.85830 0.93398 1.21921 1.05946 0.99312 0.95605 1.22199 1.06944 0.96046 0.99334 1.24866 1.02496 0.95870 0.87482 1.84002 1.64380 1.36447 1.24268 0.91019 0.92590 0.93059 0.94767 0.92944 0.87234 0.95267 0.91835 0.83240 0.80368 0.87343 0.85332 0.82440 0.80984 0.74375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 9.91 71.98 0.71 -3.96 16 2 C -0.12 -5.16 6.24 30.59 0.19 -4.97 16 3 C 0.10 4.95 5.15 86.38 0.44 5.40 16 4 N -0.45 -23.44 2.52 -645.98 -1.63 -25.07 16 5 C -0.35 -17.67 8.19 84.07 0.69 -16.98 16 6 H 0.10 4.56 6.98 -2.91 -0.02 4.54 16 7 C 0.00 0.08 5.40 84.93 0.46 0.54 16 8 N -0.90 -47.95 10.74 21.67 0.23 -47.71 16 9 Si 0.99 38.74 29.55 68.60 2.03 40.76 16 10 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 11 H -0.29 -11.16 7.11 99.48 0.71 -10.46 16 12 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 13 C 0.48 24.24 7.37 84.96 0.63 24.86 16 14 O -0.61 -33.11 12.85 -4.81 -0.06 -33.18 16 15 C -0.19 -7.88 9.17 22.29 0.20 -7.68 16 16 C -0.11 -3.73 10.09 67.12 0.68 -3.05 16 17 S -0.03 -1.14 18.60 -56.49 -1.05 -2.19 16 18 C -0.09 -2.36 6.20 71.24 0.44 -1.92 16 19 C -0.01 -0.41 6.58 24.83 0.16 -0.25 16 20 C -0.21 -5.13 10.81 22.19 0.24 -4.89 16 21 C -0.23 -4.74 10.91 22.19 0.24 -4.50 16 22 C -0.04 -0.80 12.09 66.97 0.81 0.01 16 23 O -0.19 -5.28 10.65 -2.44 -0.03 -5.31 16 24 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.11 5.95 5.15 -2.39 -0.01 5.93 16 30 H 0.03 1.57 7.24 -2.38 -0.02 1.55 16 31 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 32 H 0.15 5.78 6.52 -2.91 -0.02 5.76 16 33 H 0.18 4.17 8.03 -2.91 -0.02 4.15 16 34 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 37 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.24 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -67.41 337.75 6.44 -60.97 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 1.05 Total: 29.11 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 5.90 Total: -17.38 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -1.40 Total: -72.78 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.09 Total: -38.49 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.76 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -1.05 Total: -2.19 kcal Total: -67.41 6.44 -60.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492083535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.254 kcal (2) G-P(sol) polarization free energy of solvation -67.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds