Wall clock time and date at job start Tue Mar 31 2020 06:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47186 * 2 1 4 4 H 1.09002 * 109.46512 * 304.99858 * 3 2 1 5 5 C 1.50703 * 109.47152 * 184.99873 * 3 2 1 6 6 H 1.07991 * 119.99608 * 239.99858 * 5 3 2 7 7 C 1.37871 * 119.99919 * 59.99728 * 5 3 2 8 8 N 1.31518 * 120.00390 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99893 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47193 * 60.00072 * 9 7 5 11 11 H 1.48505 * 109.47004 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47303 * 299.99831 * 9 7 5 13 13 N 1.46495 * 109.47102 * 64.99272 * 3 2 1 14 14 C 1.34774 * 120.00431 * 275.00280 * 13 3 2 15 15 O 1.21799 * 119.99966 * 359.97438 * 14 13 3 16 16 C 1.41274 * 119.99917 * 180.02562 * 14 13 3 17 17 C 1.35114 * 119.99721 * 180.02562 * 16 14 13 18 18 S 1.76194 * 120.00293 * 359.97438 * 17 16 14 19 19 C 1.80996 * 100.00262 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47055 * 180.02562 * 19 18 17 21 21 C 1.34515 * 125.79027 * 90.00232 * 20 19 18 22 22 C 1.41383 * 106.83847 * 179.97438 * 21 20 19 23 23 C 1.34510 * 106.84258 * 359.97438 * 22 21 20 24 24 O 1.34300 * 125.78629 * 269.68561 * 20 19 18 25 25 H 1.09001 * 109.46689 * 60.00506 * 1 2 3 26 26 H 1.09005 * 109.47118 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47338 * 300.00349 * 1 2 3 28 28 H 1.08997 * 109.47338 * 239.99651 * 2 1 3 29 29 H 1.09005 * 109.47114 * 119.99713 * 2 1 3 30 30 H 0.96994 * 120.00088 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99728 * 95.00493 * 13 3 2 32 32 H 1.08000 * 120.00639 * 359.97438 * 16 14 13 33 33 H 1.08004 * 119.99573 * 179.72742 * 17 16 14 34 34 H 1.09005 * 109.46943 * 299.99958 * 19 18 17 35 35 H 1.08994 * 109.47373 * 59.99533 * 19 18 17 36 36 H 1.07996 * 126.57846 * 0.02562 * 21 20 19 37 37 H 1.07996 * 126.57954 * 179.97438 * 22 21 20 38 38 H 1.08000 * 125.79069 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0050 0.8812 -1.3816 10 1 6.5975 0.1473 -0.2347 11 1 6.3979 0.2165 -2.6502 12 1 6.4995 2.2815 -1.3821 13 7 1.6523 2.0975 1.2517 14 6 0.4350 2.6644 1.3668 15 8 -0.3426 2.6326 0.4299 16 6 0.0615 3.2965 2.5737 17 6 -1.1591 3.8644 2.6892 18 16 -2.2846 3.8171 1.3344 19 6 -3.6870 4.7020 2.0598 20 6 -4.8039 4.7859 1.0515 21 6 -5.7913 3.8860 0.8947 22 6 -6.6125 4.3578 -0.1551 23 6 -6.0782 5.5180 -0.5765 24 8 -4.9856 5.7748 0.1612 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8294 -0.0613 -2.9496 31 1 2.2718 2.1232 1.9977 32 1 0.7511 3.3252 3.4044 33 1 -1.4463 4.3438 3.6135 34 1 -4.0355 4.1681 2.9439 35 1 -3.3755 5.7077 2.3420 36 1 -5.9306 2.9778 1.4623 37 1 -7.4988 3.8786 -0.5439 38 1 -6.4640 6.1393 -1.3712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492579250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:48 Heat of formation + Delta-G solvation = -2.190218 kcal Electronic energy + Delta-G solvation = -20673.893065 eV Core-core repulsion = 17417.105855 eV Total energy + Delta-G solvation = -3256.787211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.63489 -39.24520 -35.21413 -33.28174 -32.70362 -32.25729 -31.98597 -30.72041 -27.14014 -26.80535 -23.91594 -22.51406 -21.85736 -20.77735 -19.75935 -19.31326 -17.78089 -17.36087 -16.43158 -16.12615 -15.62535 -14.93942 -14.79644 -14.56149 -14.26203 -14.07186 -13.84060 -13.22325 -12.92895 -12.82883 -12.61567 -12.31360 -12.11850 -11.77254 -11.49435 -11.20464 -10.99441 -10.81325 -10.55412 -10.24030 -10.22657 -10.11057 -10.01014 -9.55326 -9.02252 -8.88326 -8.47415 -8.26491 -7.91336 -7.21260 -6.09031 -4.18476 1.22099 1.36423 2.05479 2.50473 2.72300 2.87889 3.27269 3.32642 3.33781 4.01152 4.25582 4.46294 4.49492 4.77760 4.91573 5.07932 5.15104 5.22373 5.23681 5.65029 5.69062 5.80503 5.96451 6.10331 6.16269 6.37474 6.45078 6.52612 6.72606 7.01529 7.10248 7.26183 7.42367 7.50348 7.65850 7.78028 7.94724 8.22265 8.70866 8.80049 9.15312 9.48676 10.96163 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026794 B = 0.003111 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.762540 B = 8998.359416 C = 9333.613383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.700 5.700 14 C 0.521 3.479 15 O -0.524 6.524 16 C -0.198 4.198 17 C -0.124 4.124 18 S 0.062 5.938 19 C -0.119 4.119 20 C 0.011 3.989 21 C -0.197 4.197 22 C -0.213 4.213 23 C -0.039 4.039 24 O -0.172 6.172 25 H 0.050 0.950 26 H 0.021 0.979 27 H 0.039 0.961 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.114 7.900 9.481 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.347 5.347 14 C 0.310 3.690 15 O -0.409 6.409 16 C -0.234 4.234 17 C -0.260 4.260 18 S 0.307 5.693 19 C -0.265 4.265 20 C -0.040 4.040 21 C -0.219 4.219 22 C -0.233 4.233 23 C -0.108 4.108 24 O -0.069 6.069 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.116 0.884 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -15.425 7.590 7.486 18.750 hybrid contribution 1.119 0.368 1.693 2.062 sum -14.306 7.958 9.179 18.768 Atomic orbital electron populations 1.21829 0.98223 0.97957 1.01350 1.21926 0.92697 0.99767 1.02158 1.18775 0.94104 0.89213 0.81120 0.93220 1.21204 0.90813 1.39030 1.06275 0.92209 1.24879 0.98520 0.94843 0.95413 1.69886 1.35161 1.37548 1.09321 0.86531 0.84991 0.78279 0.77417 1.20210 1.21151 1.20214 1.46364 1.14387 1.55444 1.18502 1.17032 0.83450 0.80514 0.88028 1.90600 1.49825 1.60179 1.40250 1.21757 0.97214 1.04558 0.99916 1.25934 0.98141 1.00171 1.01728 1.88382 1.03856 1.64044 1.12974 1.22725 0.98794 1.06582 0.98358 1.21363 0.98359 0.89503 0.94798 1.21586 0.96695 1.01624 1.01983 1.21827 1.03245 0.97783 1.00412 1.24042 0.88204 0.99669 0.98864 1.84018 1.40685 1.42840 1.39324 0.93111 0.95998 0.94154 0.88374 0.95165 0.92540 0.77867 0.84907 0.84419 0.87481 0.88545 0.83282 0.83359 0.78032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.79 2.24 -69.08 -0.15 6.64 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.15 8.73 -34.44 -0.30 -14.45 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.83 11.29 55.43 0.63 -24.20 16 9 Si 0.90 20.69 29.54 -169.99 -5.02 15.66 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.70 -14.48 5.01 -57.93 -0.29 -14.77 16 14 C 0.52 10.23 6.10 -15.11 -0.09 10.13 16 15 O -0.52 -11.80 10.46 5.10 0.05 -11.75 16 16 C -0.20 -2.92 9.82 -39.54 -0.39 -3.31 16 17 C -0.12 -1.61 10.08 29.62 0.30 -1.31 16 18 S 0.06 0.94 18.59 -107.50 -2.00 -1.05 16 19 C -0.12 -1.33 6.20 36.01 0.22 -1.10 16 20 C 0.01 0.14 6.58 -35.62 -0.23 -0.10 16 21 C -0.20 -2.31 10.81 -39.70 -0.43 -2.74 16 22 C -0.21 -2.24 10.91 -39.70 -0.43 -2.68 16 23 C -0.04 -0.40 12.09 29.41 0.36 -0.05 16 24 O -0.17 -2.25 10.65 5.70 0.06 -2.19 16 25 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 28 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.39 6.97 8.50 -40.82 -0.35 6.62 16 32 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.14 1.24 8.03 -52.48 -0.42 0.82 16 34 H 0.11 0.95 8.14 -51.91 -0.42 0.53 16 35 H 0.10 0.95 8.14 -51.92 -0.42 0.52 16 36 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -31.47 334.06 -7.71 -39.18 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.09 Total: 7.36 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.08 Total: -13.28 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.34 Total: -38.97 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.11 Total: -13.94 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.00 Total: -1.05 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.47 -7.71 -39.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492579250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.992 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds