Wall clock time and date at job start Tue Mar 31 2020 06:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47186 * 2 1 4 4 H 1.09002 * 109.46512 * 304.99858 * 3 2 1 5 5 C 1.50703 * 109.47152 * 184.99873 * 3 2 1 6 6 H 1.07991 * 119.99608 * 239.99858 * 5 3 2 7 7 C 1.37871 * 119.99919 * 59.99728 * 5 3 2 8 8 N 1.31518 * 120.00390 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99893 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47193 * 60.00072 * 9 7 5 11 11 H 1.48505 * 109.47004 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47303 * 299.99831 * 9 7 5 13 13 N 1.46495 * 109.47102 * 64.99272 * 3 2 1 14 14 C 1.34774 * 120.00431 * 275.00280 * 13 3 2 15 15 O 1.21799 * 119.99966 * 359.97438 * 14 13 3 16 16 C 1.41274 * 119.99917 * 180.02562 * 14 13 3 17 17 C 1.35114 * 119.99721 * 180.02562 * 16 14 13 18 18 S 1.76194 * 120.00293 * 359.97438 * 17 16 14 19 19 C 1.80996 * 100.00262 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47055 * 180.02562 * 19 18 17 21 21 C 1.34515 * 125.79027 * 90.00232 * 20 19 18 22 22 C 1.41383 * 106.83847 * 179.97438 * 21 20 19 23 23 C 1.34510 * 106.84258 * 359.97438 * 22 21 20 24 24 O 1.34300 * 125.78629 * 269.68561 * 20 19 18 25 25 H 1.09001 * 109.46689 * 60.00506 * 1 2 3 26 26 H 1.09005 * 109.47118 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47338 * 300.00349 * 1 2 3 28 28 H 1.08997 * 109.47338 * 239.99651 * 2 1 3 29 29 H 1.09005 * 109.47114 * 119.99713 * 2 1 3 30 30 H 0.96994 * 120.00088 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99728 * 95.00493 * 13 3 2 32 32 H 1.08000 * 120.00639 * 359.97438 * 16 14 13 33 33 H 1.08004 * 119.99573 * 179.72742 * 17 16 14 34 34 H 1.09005 * 109.46943 * 299.99958 * 19 18 17 35 35 H 1.08994 * 109.47373 * 59.99533 * 19 18 17 36 36 H 1.07996 * 126.57846 * 0.02562 * 21 20 19 37 37 H 1.07996 * 126.57954 * 179.97438 * 22 21 20 38 38 H 1.08000 * 125.79069 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0050 0.8812 -1.3816 10 1 6.5975 0.1473 -0.2347 11 1 6.3979 0.2165 -2.6502 12 1 6.4995 2.2815 -1.3821 13 7 1.6523 2.0975 1.2517 14 6 0.4350 2.6644 1.3668 15 8 -0.3426 2.6326 0.4299 16 6 0.0615 3.2965 2.5737 17 6 -1.1591 3.8644 2.6892 18 16 -2.2846 3.8171 1.3344 19 6 -3.6870 4.7020 2.0598 20 6 -4.8039 4.7859 1.0515 21 6 -5.7913 3.8860 0.8947 22 6 -6.6125 4.3578 -0.1551 23 6 -6.0782 5.5180 -0.5765 24 8 -4.9856 5.7748 0.1612 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8294 -0.0613 -2.9496 31 1 2.2718 2.1232 1.9977 32 1 0.7511 3.3252 3.4044 33 1 -1.4463 4.3438 3.6135 34 1 -4.0355 4.1681 2.9439 35 1 -3.3755 5.7077 2.3420 36 1 -5.9306 2.9778 1.4623 37 1 -7.4988 3.8786 -0.5439 38 1 -6.4640 6.1393 -1.3712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492579250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:47 Heat of formation + Delta-G solvation = -21.926968 kcal Electronic energy + Delta-G solvation = -20674.748915 eV Core-core repulsion = 17417.105855 eV Total energy + Delta-G solvation = -3257.643060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.49190 -40.79411 -37.03561 -34.29179 -34.14086 -33.87192 -32.84412 -32.49713 -29.02599 -27.72393 -25.55624 -24.19365 -22.70903 -21.86262 -21.37780 -20.82835 -19.23208 -18.26218 -17.90997 -17.40791 -17.18673 -16.47338 -16.20850 -15.72641 -15.66803 -15.34049 -14.85676 -14.66301 -14.45994 -13.80960 -13.76251 -13.65219 -13.47107 -13.21771 -13.12523 -12.88988 -12.79424 -12.64281 -12.18789 -12.01933 -11.71506 -11.51899 -11.34799 -11.02763 -10.87897 -10.51913 -10.11735 -9.62031 -9.25137 -8.46180 -8.13619 -6.31116 0.22005 0.24968 1.13919 1.45009 1.47008 1.54350 1.55131 1.83914 2.07611 2.39640 2.59253 2.94186 3.15638 3.66391 4.02730 4.10046 4.11819 4.30687 4.43446 4.52468 4.57532 4.61308 4.79805 4.89718 4.97661 4.99054 5.02563 5.14065 5.17147 5.32314 5.48509 5.57847 5.59648 5.69053 5.84459 6.00184 6.16440 6.20929 6.77737 7.08958 7.36434 7.67344 8.91283 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026794 B = 0.003111 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.762540 B = 8998.359416 C = 9333.613383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.004 1.004 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.704 5.704 14 C 0.513 3.487 15 O -0.563 6.563 16 C -0.220 4.220 17 C -0.086 4.086 18 S -0.029 6.029 19 C -0.092 4.092 20 C -0.018 4.018 21 C -0.205 4.205 22 C -0.228 4.228 23 C -0.040 4.040 24 O -0.194 6.194 25 H 0.023 0.977 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.264 0.736 31 H 0.403 0.597 32 H 0.172 0.828 33 H 0.188 0.812 34 H 0.134 0.866 35 H 0.112 0.888 36 H 0.160 0.840 37 H 0.171 0.829 38 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.513 8.767 11.791 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.014 0.986 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.352 5.352 14 C 0.304 3.696 15 O -0.448 6.448 16 C -0.255 4.255 17 C -0.221 4.221 18 S 0.218 5.782 19 C -0.238 4.238 20 C -0.069 4.069 21 C -0.227 4.227 22 C -0.247 4.247 23 C -0.108 4.108 24 O -0.091 6.091 25 H 0.042 0.958 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.238 0.762 32 H 0.189 0.811 33 H 0.205 0.795 34 H 0.152 0.848 35 H 0.130 0.870 36 H 0.178 0.822 37 H 0.188 0.812 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -15.818 8.466 9.837 20.461 hybrid contribution 1.014 0.184 0.937 1.393 sum -14.804 8.650 10.774 20.250 Atomic orbital electron populations 1.21639 0.96884 0.98849 1.00302 1.21766 0.93775 0.99259 1.01024 1.18283 0.93390 0.89072 0.81597 0.98647 1.21581 0.91652 1.38833 1.06659 0.91149 1.25777 1.03286 0.94439 0.95062 1.70051 1.37085 1.38385 1.09841 0.85442 0.79199 0.78404 0.77538 1.18891 1.21236 1.19714 1.46125 1.15575 1.56085 1.17407 1.17807 0.82414 0.79959 0.89380 1.90633 1.50810 1.61259 1.42144 1.21731 0.98967 1.05894 0.98898 1.26276 0.96177 0.97847 1.01824 1.88752 1.07556 1.65201 1.16674 1.22605 0.96070 1.06851 0.98245 1.21695 0.99317 0.90098 0.95779 1.21937 0.96727 1.01740 1.02250 1.22208 1.04052 0.98101 1.00293 1.24840 0.87148 1.00069 0.98742 1.84006 1.41793 1.43443 1.39893 0.95755 0.93943 0.93542 0.91258 0.94259 0.92683 0.76233 0.81117 0.79454 0.84776 0.86988 0.82192 0.81160 0.74637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.51 71.98 0.61 -4.93 16 2 C -0.12 -6.01 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.63 2.24 44.25 0.10 14.73 16 4 H 0.00 -0.27 7.58 -2.39 -0.02 -0.29 16 5 C -0.55 -29.50 8.73 25.60 0.22 -29.27 16 6 H 0.07 3.53 7.74 -2.92 -0.02 3.51 16 7 C 0.01 0.78 5.29 84.65 0.45 1.23 16 8 N -0.92 -53.28 11.29 21.45 0.24 -53.04 16 9 Si 0.97 42.61 29.54 68.60 2.03 44.63 16 10 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 N -0.70 -29.34 5.01 -455.37 -2.28 -31.62 16 14 C 0.51 20.23 6.10 84.99 0.52 20.74 16 15 O -0.56 -26.27 10.46 -4.67 -0.05 -26.31 16 16 C -0.22 -6.01 9.82 22.30 0.22 -5.79 16 17 C -0.09 -1.98 10.08 67.10 0.68 -1.31 16 18 S -0.03 -0.85 18.59 -56.49 -1.05 -1.90 16 19 C -0.09 -1.86 6.20 71.24 0.44 -1.41 16 20 C -0.02 -0.44 6.58 24.83 0.16 -0.28 16 21 C -0.20 -4.57 10.81 22.19 0.24 -4.33 16 22 C -0.23 -4.45 10.91 22.19 0.24 -4.21 16 23 C -0.04 -0.77 12.09 66.97 0.81 0.04 16 24 O -0.19 -4.91 10.65 -2.51 -0.03 -4.94 16 25 H 0.02 1.21 7.84 -2.39 -0.02 1.19 16 26 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.05 2.07 5.64 -2.39 -0.01 2.06 16 28 H 0.07 3.91 5.95 -2.39 -0.01 3.90 16 29 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.40 14.16 8.50 -92.70 -0.79 13.37 16 32 H 0.17 3.29 8.06 -2.91 -0.02 3.26 16 33 H 0.19 2.38 8.03 -2.91 -0.02 2.36 16 34 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.11 1.90 8.14 -2.40 -0.02 1.88 16 36 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 37 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.24 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -72.55 334.06 4.00 -68.55 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.28 Total: 25.26 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 4.86 Total: -20.63 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -2.04 Total: -84.66 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.08 Total: -31.25 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -1.05 Total: -1.90 kcal Total: -72.55 4.00 -68.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492579250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.622 kcal (2) G-P(sol) polarization free energy of solvation -72.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds