Wall clock time and date at job start Tue Mar 31 2020 06:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21795 * 120.00181 * 359.97438 * 14 13 3 16 16 C 1.41273 * 119.99837 * 179.97438 * 14 13 3 17 17 C 1.35108 * 120.00178 * 179.97438 * 16 14 13 18 18 S 1.76195 * 119.99966 * 0.02562 * 17 16 14 19 19 C 1.80994 * 100.00442 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47576 * 180.02562 * 19 18 17 21 21 C 1.34503 * 125.79277 * 89.99461 * 20 19 18 22 22 C 1.41386 * 106.84446 * 180.02562 * 21 20 19 23 23 C 1.34522 * 106.83702 * 0.02562 * 22 21 20 24 24 O 1.34307 * 108.42027 * 359.73662 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 31 31 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 32 32 H 1.08005 * 120.00371 * 359.97438 * 16 14 13 33 33 H 1.08002 * 120.00245 * 180.02562 * 17 16 14 34 34 H 1.09006 * 109.47023 * 300.00014 * 19 18 17 35 35 H 1.08998 * 109.47121 * 59.99601 * 19 18 17 36 36 H 1.08000 * 126.58381 * 0.04057 * 21 20 19 37 37 H 1.07997 * 126.58640 * 179.97438 * 22 21 20 38 38 H 1.07999 * 125.78638 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3429 2.6318 -0.4305 16 6 0.0616 3.2963 -2.5741 17 6 -1.1589 3.8642 -2.6897 18 16 -2.2844 3.8172 -1.3350 19 6 -3.6868 4.7020 -2.0604 20 6 -4.8033 4.7872 -1.0518 21 6 -4.9812 5.7753 -0.1568 22 6 -6.1419 5.4535 0.5835 23 6 -6.6036 4.2874 0.0968 24 8 -5.7919 3.8913 -0.8972 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 5.8770 0.4827 2.1133 31 1 2.2720 2.1231 -1.9978 32 1 0.7516 3.3256 -3.4044 33 1 -1.4446 4.3470 -3.6126 34 1 -3.3752 5.7077 -2.3427 35 1 -4.0353 4.1681 -2.9445 36 1 -4.3573 6.6475 -0.0284 37 1 -6.5745 6.0321 1.3862 38 1 -7.4806 3.7613 0.4438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492579251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:50 Heat of formation + Delta-G solvation = 5.736233 kcal Electronic energy + Delta-G solvation = -20778.254538 eV Core-core repulsion = 17521.811044 eV Total energy + Delta-G solvation = -3256.443494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.69756 -39.45818 -35.51392 -33.34668 -32.83214 -32.29695 -32.05780 -31.27934 -27.60341 -26.91956 -23.95656 -22.43715 -21.91986 -20.90499 -20.09127 -19.54290 -17.93246 -17.44909 -16.50124 -16.34013 -15.85817 -15.28059 -14.88282 -14.64135 -14.39671 -14.16649 -13.82247 -13.41465 -13.02457 -12.97985 -12.86494 -12.47277 -12.31945 -11.97136 -11.84834 -11.72791 -11.06700 -10.92562 -10.60104 -10.56024 -10.34559 -10.07594 -9.88427 -9.46436 -9.19894 -8.99251 -8.73495 -8.37280 -8.13410 -7.33918 -6.18927 -4.21104 1.14147 1.25475 1.97802 2.41995 2.64820 2.81161 3.25944 3.37803 3.43699 3.84640 4.18446 4.34256 4.40360 4.71119 4.85605 5.01692 5.03938 5.15119 5.17309 5.55958 5.63156 5.74680 5.90078 6.00614 6.01174 6.03902 6.07877 6.25074 6.31328 6.71252 6.75638 6.89536 6.95047 7.02301 7.31617 7.34540 7.55176 8.17734 8.56189 8.77763 8.95094 9.42348 10.93237 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023692 B = 0.003462 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.534689 B = 8084.728083 C = 8667.377537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.242 3.758 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.693 5.693 14 C 0.524 3.476 15 O -0.527 6.527 16 C -0.199 4.199 17 C -0.120 4.120 18 S 0.059 5.941 19 C -0.117 4.117 20 C 0.010 3.990 21 C -0.196 4.196 22 C -0.214 4.214 23 C -0.039 4.039 24 O -0.173 6.173 25 H 0.030 0.970 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.267 0.733 31 H 0.396 0.604 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.034 7.723 -8.011 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.138 3.862 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.340 5.340 14 C 0.313 3.687 15 O -0.411 6.411 16 C -0.235 4.235 17 C -0.256 4.256 18 S 0.305 5.695 19 C -0.263 4.263 20 C -0.042 4.042 21 C -0.218 4.218 22 C -0.233 4.233 23 C -0.108 4.108 24 O -0.069 6.069 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.229 0.771 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.126 0.874 35 H 0.115 0.885 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -20.422 6.944 -6.311 22.474 hybrid contribution -0.090 0.244 -0.915 0.951 sum -20.511 7.188 -7.226 22.904 Atomic orbital electron populations 1.21868 0.96807 0.98966 1.02387 1.22276 0.94444 0.99921 1.00986 1.19145 0.95547 0.88527 0.82978 0.93219 1.21068 0.88698 1.39683 1.07801 0.90247 1.24838 0.94861 0.95158 0.97691 1.69870 1.08710 1.44629 1.29829 0.86897 0.81010 0.79951 0.80844 1.20272 1.22219 1.18388 1.46033 1.14614 1.55411 1.17915 1.17063 0.83181 0.80298 0.88144 1.90599 1.49902 1.60259 1.40347 1.21689 0.97326 1.04711 0.99822 1.25954 0.97992 0.99874 1.01745 1.88313 1.03831 1.64523 1.12867 1.22709 0.97612 1.06740 0.99210 1.21353 0.91400 0.90425 1.00985 1.21596 1.00102 1.01582 0.98484 1.21842 0.98736 0.98673 1.04022 1.24049 0.97581 0.97710 0.91410 1.84018 1.32107 1.44809 1.45961 0.95108 0.92797 0.92834 0.92879 0.92401 0.92320 0.77077 0.84637 0.84252 0.87364 0.88482 0.83238 0.83329 0.78019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.61 16 2 C -0.14 -3.08 5.11 -26.73 -0.14 -3.22 16 3 C 0.24 5.73 1.83 -69.08 -0.13 5.60 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.96 16 5 C -0.53 -14.47 9.31 -34.44 -0.32 -14.79 16 6 H 0.08 2.26 7.98 -52.48 -0.42 1.84 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 9 Si 0.88 21.97 24.41 -169.99 -4.15 17.82 16 10 H -0.28 -6.66 6.83 56.52 0.39 -6.27 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 13 N -0.69 -13.61 5.01 -57.93 -0.29 -13.90 16 14 C 0.52 9.65 6.10 -15.10 -0.09 9.56 16 15 O -0.53 -11.07 10.46 5.10 0.05 -11.02 16 16 C -0.20 -2.75 9.82 -39.54 -0.39 -3.14 16 17 C -0.12 -1.45 10.08 29.62 0.30 -1.15 16 18 S 0.06 0.84 18.59 -107.50 -2.00 -1.16 16 19 C -0.12 -1.22 6.20 36.00 0.22 -1.00 16 20 C 0.01 0.11 6.58 -35.63 -0.23 -0.12 16 21 C -0.20 -2.19 10.81 -39.70 -0.43 -2.62 16 22 C -0.21 -2.13 10.91 -39.70 -0.43 -2.56 16 23 C -0.04 -0.38 12.09 29.42 0.36 -0.02 16 24 O -0.17 -2.13 10.65 5.68 0.06 -2.07 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 1.08 5.64 -51.93 -0.29 0.79 16 27 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 28 H 0.05 1.25 3.21 -51.93 -0.17 1.09 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.40 6.84 8.50 -40.82 -0.35 6.50 16 32 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.14 1.15 8.03 -52.49 -0.42 0.73 16 34 H 0.11 0.89 8.14 -51.91 -0.42 0.47 16 35 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 36 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.20 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 327.29 15.07 4.93 4.93 Total: -1.00 -32.64 327.29 -6.65 -39.29 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -4.96 Total: 5.91 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -1.06 Total: -13.97 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.48 Total: -39.73 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.11 Total: -13.09 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.15 Total: 17.82 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.00 Total: -1.16 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.64 -6.65 -39.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492579251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.025 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds