Wall clock time and date at job start Tue Mar 31 2020 06:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21795 * 120.00181 * 359.97438 * 14 13 3 16 16 C 1.41273 * 119.99837 * 179.97438 * 14 13 3 17 17 C 1.35108 * 120.00178 * 179.97438 * 16 14 13 18 18 S 1.76195 * 119.99966 * 0.02562 * 17 16 14 19 19 C 1.80994 * 100.00442 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47576 * 180.02562 * 19 18 17 21 21 C 1.34503 * 125.79277 * 89.99461 * 20 19 18 22 22 C 1.41386 * 106.84446 * 180.02562 * 21 20 19 23 23 C 1.34522 * 106.83702 * 0.02562 * 22 21 20 24 24 O 1.34307 * 108.42027 * 359.73662 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 31 31 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 32 32 H 1.08005 * 120.00371 * 359.97438 * 16 14 13 33 33 H 1.08002 * 120.00245 * 180.02562 * 17 16 14 34 34 H 1.09006 * 109.47023 * 300.00014 * 19 18 17 35 35 H 1.08998 * 109.47121 * 59.99601 * 19 18 17 36 36 H 1.08000 * 126.58381 * 0.04057 * 21 20 19 37 37 H 1.07997 * 126.58640 * 179.97438 * 22 21 20 38 38 H 1.07999 * 125.78638 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3429 2.6318 -0.4305 16 6 0.0616 3.2963 -2.5741 17 6 -1.1589 3.8642 -2.6897 18 16 -2.2844 3.8172 -1.3350 19 6 -3.6868 4.7020 -2.0604 20 6 -4.8033 4.7872 -1.0518 21 6 -4.9812 5.7753 -0.1568 22 6 -6.1419 5.4535 0.5835 23 6 -6.6036 4.2874 0.0968 24 8 -5.7919 3.8913 -0.8972 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 5.8770 0.4827 2.1133 31 1 2.2720 2.1231 -1.9978 32 1 0.7516 3.3256 -3.4044 33 1 -1.4446 4.3470 -3.6126 34 1 -3.3752 5.7077 -2.3427 35 1 -4.0353 4.1681 -2.9445 36 1 -4.3573 6.6475 -0.0284 37 1 -6.5745 6.0321 1.3862 38 1 -7.4806 3.7613 0.4438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492579251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:49 Heat of formation + Delta-G solvation = -16.224813 kcal Electronic energy + Delta-G solvation = -20779.206840 eV Core-core repulsion = 17521.811044 eV Total energy + Delta-G solvation = -3257.395796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.49481 -40.91524 -37.23769 -34.38542 -34.16105 -33.99754 -32.88192 -32.80737 -29.48428 -27.73799 -25.42051 -24.16760 -22.71406 -22.04946 -21.50437 -20.91478 -19.38806 -18.30341 -18.10140 -17.55952 -17.32514 -16.65502 -16.21404 -15.79941 -15.64547 -15.27995 -15.13560 -14.86025 -14.58200 -14.10181 -13.77112 -13.73706 -13.66563 -13.55496 -13.21607 -12.96791 -12.80231 -12.75389 -12.38774 -11.86164 -11.76465 -11.42743 -11.27259 -11.20782 -10.88571 -10.84877 -10.16986 -9.75554 -9.26397 -8.48123 -8.37729 -6.42450 0.18922 0.23632 1.12679 1.26658 1.34757 1.45175 1.52799 1.82877 2.06787 2.26418 2.51949 2.76486 2.98727 3.65596 4.02361 4.05195 4.11070 4.26677 4.30431 4.34695 4.43575 4.46655 4.58894 4.83999 4.89408 4.97710 4.98676 5.01440 5.06520 5.16566 5.17154 5.29299 5.44946 5.55174 5.57014 5.73702 6.15795 6.18155 6.59958 6.98131 7.21212 7.55009 8.77637 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023692 B = 0.003462 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.534689 B = 8084.728083 C = 8667.377537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.136 4.136 3 C 0.252 3.748 4 H 0.020 0.980 5 C -0.532 4.532 6 H 0.056 0.944 7 C 0.029 3.971 8 N -0.935 5.935 9 Si 0.936 3.064 10 H -0.260 1.260 11 H -0.293 1.293 12 H -0.262 1.262 13 N -0.699 5.699 14 C 0.519 3.481 15 O -0.559 6.559 16 C -0.222 4.222 17 C -0.083 4.083 18 S -0.023 6.023 19 C -0.092 4.092 20 C -0.018 4.018 21 C -0.205 4.205 22 C -0.229 4.229 23 C -0.039 4.039 24 O -0.193 6.193 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.270 0.730 31 H 0.406 0.594 32 H 0.170 0.830 33 H 0.187 0.813 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.159 0.841 37 H 0.170 0.830 38 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.416 8.081 -9.323 25.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.174 4.174 3 C 0.146 3.854 4 H 0.038 0.962 5 C -0.570 4.570 6 H 0.074 0.926 7 C -0.170 4.170 8 N -0.574 5.574 9 Si 0.764 3.236 10 H -0.186 1.186 11 H -0.221 1.221 12 H -0.187 1.187 13 N -0.347 5.347 14 C 0.311 3.689 15 O -0.445 6.445 16 C -0.257 4.257 17 C -0.219 4.219 18 S 0.224 5.776 19 C -0.238 4.238 20 C -0.068 4.068 21 C -0.227 4.227 22 C -0.248 4.248 23 C -0.107 4.107 24 O -0.090 6.090 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.241 0.759 32 H 0.187 0.813 33 H 0.205 0.795 34 H 0.151 0.849 35 H 0.132 0.868 36 H 0.177 0.823 37 H 0.187 0.813 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -22.808 7.306 -7.653 25.142 hybrid contribution 0.492 0.275 -0.534 0.777 sum -22.315 7.582 -8.187 24.949 Atomic orbital electron populations 1.21727 0.95157 1.00260 1.01623 1.22189 0.95822 0.98605 1.00781 1.18712 0.92956 0.89554 0.84155 0.96194 1.21334 0.90534 1.38291 1.06842 0.92585 1.25542 0.95708 0.95946 0.99848 1.69976 1.10242 1.46338 1.30865 0.86033 0.79265 0.79921 0.78381 1.18610 1.22068 1.18680 1.45873 1.15823 1.56215 1.16822 1.17748 0.82075 0.79688 0.89429 1.90628 1.50677 1.61176 1.41973 1.21672 0.99002 1.06103 0.98910 1.26287 0.96083 0.97586 1.01896 1.88628 1.07146 1.65667 1.16206 1.22606 0.94947 1.07450 0.98794 1.21673 0.92120 0.90867 1.02162 1.21932 1.00604 1.01838 0.98326 1.22212 0.98624 0.99246 1.04686 1.24836 0.97860 0.97759 0.90217 1.84008 1.32682 1.45390 1.46917 0.92649 0.92551 0.94633 0.94078 0.91467 0.92120 0.75912 0.81284 0.79545 0.84906 0.86849 0.82311 0.81264 0.74614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.20 8.51 71.98 0.61 -4.59 16 2 C -0.14 -5.98 5.11 30.60 0.16 -5.82 16 3 C 0.25 12.05 1.83 44.25 0.08 12.13 16 4 H 0.02 1.09 6.63 -2.39 -0.02 1.07 16 5 C -0.53 -29.42 9.31 25.60 0.24 -29.18 16 6 H 0.06 3.29 7.98 -2.91 -0.02 3.26 16 7 C 0.03 1.67 5.45 84.66 0.46 2.13 16 8 N -0.94 -56.87 13.96 21.45 0.30 -56.57 16 9 Si 0.94 45.85 24.41 68.60 1.67 47.53 16 10 H -0.26 -12.01 6.83 99.48 0.68 -11.33 16 11 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 12 H -0.26 -12.85 6.53 99.48 0.65 -12.20 16 13 N -0.70 -27.39 5.01 -455.35 -2.28 -29.67 16 14 C 0.52 18.80 6.10 84.99 0.52 19.32 16 15 O -0.56 -23.61 10.46 -4.65 -0.05 -23.66 16 16 C -0.22 -5.60 9.82 22.29 0.22 -5.38 16 17 C -0.08 -1.75 10.08 67.10 0.68 -1.07 16 18 S -0.02 -0.64 18.59 -56.49 -1.05 -1.69 16 19 C -0.09 -1.69 6.20 71.24 0.44 -1.25 16 20 C -0.02 -0.39 6.58 24.83 0.16 -0.23 16 21 C -0.21 -4.30 10.81 22.19 0.24 -4.06 16 22 C -0.23 -4.17 10.91 22.19 0.24 -3.93 16 23 C -0.04 -0.68 12.09 66.97 0.81 0.13 16 24 O -0.19 -4.50 10.65 -2.59 -0.03 -4.53 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 26 H 0.06 2.21 5.64 -2.39 -0.01 2.19 16 27 H 0.03 1.52 7.84 -2.38 -0.02 1.50 16 28 H 0.04 1.90 3.21 -2.39 -0.01 1.90 16 29 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.41 13.93 8.50 -92.71 -0.79 13.15 16 32 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 33 H 0.19 2.08 8.03 -2.91 -0.02 2.06 16 34 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.11 1.70 8.14 -2.40 -0.02 1.68 16 36 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 38 H 0.24 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -73.11 327.29 3.63 -69.48 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.20 Total: 20.91 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 4.86 Total: -21.81 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -1.98 Total: -86.24 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.08 Total: -28.18 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.67 Total: 47.53 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -1.05 Total: -1.69 kcal Total: -73.11 3.63 -69.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492579251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.256 kcal (2) G-P(sol) polarization free energy of solvation -73.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds