Wall clock time and date at job start Tue Mar 31 2020 07:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21336 * 119.99661 * 2 1 4 4 C 1.46535 * 120.00311 * 179.97438 * 2 1 3 5 5 C 1.37080 * 123.03296 * 0.02936 * 4 2 1 6 6 S 1.70595 * 110.48967 * 180.24366 * 5 4 2 7 7 C 1.75669 * 91.90711 * 359.65503 * 6 5 4 8 8 C 1.46771 * 124.99671 * 180.02562 * 7 6 5 9 9 O 1.21684 * 119.99649 * 172.35739 * 8 7 6 10 10 N 1.34774 * 120.00277 * 352.35073 * 8 7 6 11 11 C 1.46508 * 119.99753 * 1.74675 * 10 8 7 12 12 C 1.50704 * 109.46865 * 82.03584 * 11 10 8 13 13 H 1.08004 * 120.00246 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99721 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99964 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00239 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47075 * 89.99444 * 16 14 12 18 18 H 1.48494 * 109.47286 * 209.99593 * 16 14 12 19 19 H 1.48500 * 109.47112 * 330.00007 * 16 14 12 20 20 C 1.46496 * 120.00261 * 181.74564 * 10 8 7 21 21 C 1.52998 * 109.47032 * 114.96000 * 20 10 8 22 22 C 1.53002 * 109.47214 * 234.96157 * 20 10 8 23 23 C 1.34730 * 110.00357 * 0.34684 * 7 6 5 24 24 H 1.09004 * 109.46465 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47161 * 299.99759 * 1 2 3 26 26 H 1.08999 * 109.46912 * 60.00272 * 1 2 3 27 27 H 1.07997 * 124.75744 * 359.97027 * 5 4 2 28 28 H 1.08997 * 109.47119 * 202.03408 * 11 10 8 29 29 H 1.08996 * 109.47076 * 322.03652 * 11 10 8 30 30 H 0.96997 * 120.00111 * 179.97438 * 15 14 12 31 31 H 1.09003 * 109.47210 * 354.96303 * 20 10 8 32 32 H 1.09003 * 109.46876 * 60.00098 * 21 20 10 33 33 H 1.09000 * 109.47163 * 179.97438 * 21 20 10 34 34 H 1.08997 * 109.47650 * 299.99999 * 21 20 10 35 35 H 1.08994 * 109.46940 * 60.00312 * 22 20 10 36 36 H 1.09003 * 109.46831 * 179.97438 * 22 20 10 37 37 H 1.08996 * 109.46985 * 299.99519 * 22 20 10 38 38 H 1.07993 * 123.16297 * 179.78037 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2398 -1.2690 0.0006 5 6 1.6183 -2.4908 0.0005 6 16 2.7718 -3.7476 0.0081 7 6 4.1048 -2.6035 0.0007 8 6 5.5266 -2.9676 0.0022 9 8 6.3750 -2.1076 -0.1435 10 7 5.8926 -4.2545 0.1649 11 6 4.8703 -5.2950 0.3020 12 6 4.3730 -5.6935 -1.0637 13 1 4.7775 -5.2190 -1.9455 14 6 3.4015 -6.6640 -1.1873 15 7 2.9670 -7.0115 -2.3790 16 14 2.7013 -7.4844 0.3378 17 1 1.5229 -6.7172 0.8158 18 1 2.2879 -8.8720 0.0080 19 1 3.7362 -7.5159 1.4023 20 6 7.3125 -4.6129 0.2046 21 6 7.6624 -5.1572 1.5910 22 6 7.5980 -5.6833 -0.8506 23 6 3.6300 -1.3426 0.0007 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.5483 -2.6372 0.0005 28 1 5.3008 -6.1639 0.7997 29 1 4.0391 -4.9119 0.8939 30 1 2.2839 -7.6945 -2.4661 31 1 7.9162 -3.7291 -0.0017 32 1 7.0587 -6.0410 1.7973 33 1 8.7188 -5.4243 1.6204 34 1 7.4591 -4.3947 2.3428 35 1 7.3488 -5.2955 -1.8383 36 1 8.6546 -5.9496 -0.8213 37 1 6.9944 -6.5671 -0.6442 38 1 4.2679 -0.4712 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519299486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:25 Heat of formation + Delta-G solvation = -40.626188 kcal Electronic energy + Delta-G solvation = -22009.815016 eV Core-core repulsion = 18751.361097 eV Total energy + Delta-G solvation = -3258.453919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.58902 -39.12145 -36.60834 -35.64321 -33.39668 -31.97924 -30.79855 -28.28290 -28.24217 -26.75636 -24.92204 -23.05966 -22.80312 -20.09230 -18.63706 -18.36578 -17.38804 -17.34151 -16.13349 -15.66735 -15.19446 -14.87669 -14.67582 -14.26367 -14.09688 -13.61548 -13.49004 -13.13178 -12.84647 -12.81100 -12.40407 -12.25914 -12.01917 -11.93542 -11.86920 -11.80148 -11.66894 -11.23771 -10.95648 -10.90704 -10.48523 -10.32651 -10.05470 -9.86532 -9.35960 -9.23886 -9.10108 -8.43508 -8.00685 -7.81103 -6.52840 -4.48757 0.95433 1.81884 2.15789 2.61173 2.93980 3.03714 3.08278 3.30254 3.60550 3.87745 3.97375 4.46798 4.77310 5.11846 5.19854 5.27750 5.46507 5.46753 5.52149 5.65752 5.68819 5.88397 5.94785 5.99669 6.02670 6.08850 6.20553 6.23726 6.25644 6.38221 6.58041 6.65664 6.75755 6.85353 7.03500 7.19638 7.84149 7.88549 8.11510 8.55190 8.76647 9.01274 10.57381 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.007050 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.662291 B = 3970.528957 C = 5416.227705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.414 3.586 3 O -0.477 6.477 4 C -0.221 4.221 5 C -0.281 4.281 6 S 0.409 5.591 7 C -0.291 4.291 8 C 0.594 3.406 9 O -0.558 6.558 10 N -0.587 5.587 11 C 0.197 3.803 12 C -0.531 4.531 13 H 0.090 0.910 14 C 0.089 3.911 15 N -0.866 5.866 16 Si 0.843 3.157 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.257 1.257 20 C 0.137 3.863 21 C -0.160 4.160 22 C -0.152 4.152 23 C -0.030 4.030 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.162 0.838 28 H 0.055 0.945 29 H 0.027 0.973 30 H 0.273 0.727 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.365 1.436 6.798 7.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.292 3.708 3 O -0.355 6.355 4 C -0.236 4.236 5 C -0.421 4.421 6 S 0.687 5.313 7 C -0.412 4.412 8 C 0.383 3.617 9 O -0.440 6.440 10 N -0.317 5.317 11 C 0.073 3.927 12 C -0.574 4.574 13 H 0.108 0.892 14 C -0.119 4.119 15 N -0.500 5.500 16 Si 0.667 3.333 17 H -0.186 1.186 18 H -0.199 1.199 19 H -0.181 1.181 20 C 0.034 3.966 21 C -0.218 4.218 22 C -0.210 4.210 23 C -0.061 4.061 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.179 0.821 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.896 0.721 6.643 6.946 hybrid contribution -0.728 0.816 0.488 1.198 sum -2.624 1.538 7.131 7.753 Atomic orbital electron populations 1.22157 0.94520 1.04415 1.04253 1.21964 0.91065 0.87349 0.70409 1.90515 1.72177 1.34460 1.38326 1.19364 0.93728 0.94446 1.16046 1.27707 1.07791 1.02133 1.04452 1.85551 0.89315 1.00280 1.56172 1.24162 0.98363 0.98392 1.20284 1.16994 0.86361 0.82364 0.76025 1.90720 1.51696 1.49218 1.52329 1.47807 1.07055 1.06386 1.70451 1.20029 0.86299 0.87906 0.98476 1.21455 1.21945 1.21870 0.92145 0.89152 1.24844 0.95685 0.95563 0.95765 1.69857 1.28177 1.29863 1.22150 0.87284 0.80998 0.80821 0.84155 1.18615 1.19889 1.18112 1.20945 0.81668 0.98922 0.95081 1.22162 1.01334 1.01406 0.96938 1.22059 1.00318 0.99480 0.99161 1.20152 0.93591 0.96724 0.95668 0.90143 0.89318 0.89227 0.82083 0.92768 0.95698 0.91697 0.88877 0.92181 0.91830 0.92744 0.92062 0.92851 0.91031 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.19 10.23 36.01 0.37 -1.82 16 2 C 0.41 6.65 7.23 -30.96 -0.22 6.43 16 3 O -0.48 -9.13 17.44 5.51 0.10 -9.03 16 4 C -0.22 -3.86 5.81 -106.61 -0.62 -4.48 16 5 C -0.28 -4.51 10.30 30.31 0.31 -4.20 16 6 S 0.41 7.61 15.01 -107.50 -1.61 6.00 16 7 C -0.29 -5.94 6.16 -37.38 -0.23 -6.17 16 8 C 0.59 12.86 7.56 -12.81 -0.10 12.76 16 9 O -0.56 -13.17 16.14 5.20 0.08 -13.09 16 10 N -0.59 -11.67 2.38 -168.97 -0.40 -12.07 16 11 C 0.20 3.95 2.94 -5.19 -0.02 3.93 16 12 C -0.53 -12.19 6.69 -34.44 -0.23 -12.42 16 13 H 0.09 2.40 8.06 -52.48 -0.42 1.97 16 14 C 0.09 2.08 5.06 -17.82 -0.09 1.99 16 15 N -0.87 -22.10 13.96 55.43 0.77 -21.32 16 16 Si 0.84 16.90 26.77 -169.99 -4.55 12.35 16 17 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 18 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 19 H -0.26 -4.88 6.54 56.52 0.37 -4.51 16 20 C 0.14 2.36 3.22 -67.93 -0.22 2.14 16 21 C -0.16 -2.28 9.26 37.16 0.34 -1.93 16 22 C -0.15 -2.51 8.70 37.16 0.32 -2.18 16 23 C -0.03 -0.60 9.47 -40.46 -0.38 -0.98 16 24 H 0.08 0.77 6.02 -51.93 -0.31 0.46 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.16 2.02 6.55 -52.49 -0.34 1.68 16 28 H 0.05 1.05 5.50 -51.93 -0.29 0.76 16 29 H 0.03 0.51 3.96 -22.12 -0.09 0.42 16 30 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 31 H 0.09 1.68 6.91 -51.93 -0.36 1.32 16 32 H 0.06 0.85 6.93 -51.93 -0.36 0.49 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.25 7.10 -51.93 -0.37 0.88 16 38 H 0.15 2.96 7.96 -52.49 -0.42 2.54 16 LS Contribution 321.20 15.07 4.84 4.84 Total: -1.00 -27.99 321.20 -6.19 -34.18 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.66 Total: 5.08 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.76 Total: -6.93 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.37 Total: -33.39 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.18 Total: -22.12 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -4.55 Total: 12.35 kcal Atomic # 16 Polarization: 7.61 SS G_CDS: -1.61 Total: 6.00 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.99 -6.19 -34.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519299486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.443 kcal (2) G-P(sol) polarization free energy of solvation -27.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds