Wall clock time and date at job start Tue Mar 31 2020 07:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21336 * 119.99661 * 2 1 4 4 C 1.46535 * 120.00311 * 179.97438 * 2 1 3 5 5 C 1.37080 * 123.03296 * 0.02936 * 4 2 1 6 6 S 1.70595 * 110.48967 * 180.24366 * 5 4 2 7 7 C 1.75669 * 91.90711 * 359.65503 * 6 5 4 8 8 C 1.46771 * 124.99671 * 180.02562 * 7 6 5 9 9 O 1.21684 * 119.99649 * 172.35739 * 8 7 6 10 10 N 1.34774 * 120.00277 * 352.35073 * 8 7 6 11 11 C 1.46508 * 119.99753 * 1.74675 * 10 8 7 12 12 C 1.50704 * 109.46865 * 82.03584 * 11 10 8 13 13 H 1.08004 * 120.00246 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99721 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99964 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00239 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47075 * 89.99444 * 16 14 12 18 18 H 1.48494 * 109.47286 * 209.99593 * 16 14 12 19 19 H 1.48500 * 109.47112 * 330.00007 * 16 14 12 20 20 C 1.46496 * 120.00261 * 181.74564 * 10 8 7 21 21 C 1.52998 * 109.47032 * 114.96000 * 20 10 8 22 22 C 1.53002 * 109.47214 * 234.96157 * 20 10 8 23 23 C 1.34730 * 110.00357 * 0.34684 * 7 6 5 24 24 H 1.09004 * 109.46465 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47161 * 299.99759 * 1 2 3 26 26 H 1.08999 * 109.46912 * 60.00272 * 1 2 3 27 27 H 1.07997 * 124.75744 * 359.97027 * 5 4 2 28 28 H 1.08997 * 109.47119 * 202.03408 * 11 10 8 29 29 H 1.08996 * 109.47076 * 322.03652 * 11 10 8 30 30 H 0.96997 * 120.00111 * 179.97438 * 15 14 12 31 31 H 1.09003 * 109.47210 * 354.96303 * 20 10 8 32 32 H 1.09003 * 109.46876 * 60.00098 * 21 20 10 33 33 H 1.09000 * 109.47163 * 179.97438 * 21 20 10 34 34 H 1.08997 * 109.47650 * 299.99999 * 21 20 10 35 35 H 1.08994 * 109.46940 * 60.00312 * 22 20 10 36 36 H 1.09003 * 109.46831 * 179.97438 * 22 20 10 37 37 H 1.08996 * 109.46985 * 299.99519 * 22 20 10 38 38 H 1.07993 * 123.16297 * 179.78037 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2398 -1.2690 0.0006 5 6 1.6183 -2.4908 0.0005 6 16 2.7718 -3.7476 0.0081 7 6 4.1048 -2.6035 0.0007 8 6 5.5266 -2.9676 0.0022 9 8 6.3750 -2.1076 -0.1435 10 7 5.8926 -4.2545 0.1649 11 6 4.8703 -5.2950 0.3020 12 6 4.3730 -5.6935 -1.0637 13 1 4.7775 -5.2190 -1.9455 14 6 3.4015 -6.6640 -1.1873 15 7 2.9670 -7.0115 -2.3790 16 14 2.7013 -7.4844 0.3378 17 1 1.5229 -6.7172 0.8158 18 1 2.2879 -8.8720 0.0080 19 1 3.7362 -7.5159 1.4023 20 6 7.3125 -4.6129 0.2046 21 6 7.6624 -5.1572 1.5910 22 6 7.5980 -5.6833 -0.8506 23 6 3.6300 -1.3426 0.0007 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.5483 -2.6372 0.0005 28 1 5.3008 -6.1639 0.7997 29 1 4.0391 -4.9119 0.8939 30 1 2.2839 -7.6945 -2.4661 31 1 7.9162 -3.7291 -0.0017 32 1 7.0587 -6.0410 1.7973 33 1 8.7188 -5.4243 1.6204 34 1 7.4591 -4.3947 2.3428 35 1 7.3488 -5.2955 -1.8383 36 1 8.6546 -5.9496 -0.8213 37 1 6.9944 -6.5671 -0.6442 38 1 4.2679 -0.4712 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519299486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:24 Heat of formation + Delta-G solvation = -57.459972 kcal Electronic energy + Delta-G solvation = -22010.544984 eV Core-core repulsion = 18751.361097 eV Total energy + Delta-G solvation = -3259.183887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.15879 -40.52545 -38.10281 -37.23998 -35.06057 -33.55616 -32.03423 -29.97295 -29.52960 -28.01960 -26.34955 -24.75438 -24.24851 -21.48270 -20.17290 -19.78971 -19.14044 -18.88342 -17.66917 -17.07504 -16.66796 -16.43516 -15.99997 -15.76982 -15.54243 -15.02447 -14.98093 -14.67505 -14.50891 -14.16536 -13.74127 -13.55966 -13.51643 -13.22456 -13.03289 -12.95866 -12.93451 -12.74697 -12.47936 -12.34579 -11.99103 -11.78837 -11.59863 -11.49508 -11.02947 -10.85782 -10.58359 -9.98156 -9.53722 -9.36973 -8.31453 -6.33275 -0.46990 0.37895 0.62711 1.14516 1.39387 1.46159 1.51541 1.85101 2.08068 2.31011 2.31883 3.01784 3.26718 3.64005 3.99466 4.09165 4.20846 4.25504 4.32804 4.35272 4.44516 4.61113 4.67482 4.70189 4.78936 4.79660 4.80895 4.95260 5.01470 5.05762 5.21065 5.29050 5.30225 5.33893 5.45252 5.67242 6.13043 6.44179 6.59595 6.65791 7.09186 7.23071 8.82828 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.007050 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.662291 B = 3970.528957 C = 5416.227705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.413 3.587 3 O -0.516 6.516 4 C -0.234 4.234 5 C -0.243 4.243 6 S 0.394 5.606 7 C -0.315 4.315 8 C 0.582 3.418 9 O -0.591 6.591 10 N -0.585 5.585 11 C 0.201 3.799 12 C -0.527 4.527 13 H 0.040 0.960 14 C 0.052 3.948 15 N -0.917 5.917 16 Si 0.887 3.113 17 H -0.236 1.236 18 H -0.280 1.280 19 H -0.236 1.236 20 C 0.126 3.874 21 C -0.151 4.151 22 C -0.142 4.142 23 C -0.039 4.039 24 H 0.103 0.897 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.209 0.791 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.274 0.726 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.030 0.970 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 0.784 8.964 10.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.294 3.706 3 O -0.397 6.397 4 C -0.248 4.248 5 C -0.382 4.382 6 S 0.670 5.330 7 C -0.436 4.436 8 C 0.372 3.628 9 O -0.476 6.476 10 N -0.315 5.315 11 C 0.077 3.923 12 C -0.569 4.569 13 H 0.058 0.942 14 C -0.152 4.152 15 N -0.554 5.554 16 Si 0.708 3.292 17 H -0.160 1.160 18 H -0.206 1.206 19 H -0.159 1.159 20 C 0.024 3.976 21 C -0.208 4.208 22 C -0.200 4.200 23 C -0.071 4.071 24 H 0.121 0.879 25 H 0.128 0.872 26 H 0.123 0.877 27 H 0.226 0.774 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.894 0.044 8.823 9.644 hybrid contribution -0.086 1.149 -0.250 1.179 sum -3.980 1.193 8.574 9.528 Atomic orbital electron populations 1.22191 0.89755 1.06510 1.05943 1.22630 0.93421 0.85821 0.68704 1.90514 1.73508 1.35440 1.40220 1.19632 0.92830 0.96222 1.16120 1.27980 1.09424 0.99964 1.00837 1.85343 0.89399 1.00936 1.57356 1.24170 0.98400 0.99203 1.21781 1.17336 0.86903 0.82737 0.75832 1.90680 1.52682 1.50105 1.54095 1.47961 1.08265 1.05820 1.69431 1.19991 0.86885 0.88348 0.97059 1.21246 1.22043 1.21831 0.91765 0.94208 1.25447 0.95638 0.95767 0.98304 1.69992 1.29528 1.31174 1.24714 0.86558 0.81795 0.79647 0.81217 1.15958 1.20550 1.15870 1.21223 0.80193 0.98743 0.97470 1.22093 1.03311 1.01193 0.94247 1.21975 1.02337 0.98506 0.97208 1.20273 0.95053 0.96013 0.95757 0.87863 0.87222 0.87676 0.77426 0.91230 0.94252 0.91683 0.90167 0.91680 0.88867 0.92937 0.95123 0.89376 0.91922 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.35 10.23 71.24 0.73 -2.62 16 2 C 0.41 12.42 7.23 27.85 0.20 12.62 16 3 O -0.52 -19.51 17.44 -3.20 -0.06 -19.56 16 4 C -0.23 -7.80 5.81 -21.15 -0.12 -7.93 16 5 C -0.24 -6.98 10.30 67.55 0.70 -6.29 16 6 S 0.39 14.12 15.01 -56.49 -0.85 13.27 16 7 C -0.32 -13.09 6.16 23.70 0.15 -12.95 16 8 C 0.58 26.16 7.56 86.47 0.65 26.82 16 9 O -0.59 -29.35 16.14 -4.30 -0.07 -29.42 16 10 N -0.59 -23.69 2.38 -806.71 -1.92 -25.61 16 11 C 0.20 7.96 2.94 85.63 0.25 8.21 16 12 C -0.53 -24.68 6.69 25.60 0.17 -24.51 16 13 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 14 C 0.05 2.42 5.06 84.65 0.43 2.85 16 15 N -0.92 -47.80 13.96 21.45 0.30 -47.50 16 16 Si 0.89 32.94 26.77 68.60 1.84 34.78 16 17 H -0.24 -7.80 7.11 99.48 0.71 -7.10 16 18 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.24 -7.91 6.54 99.48 0.65 -7.26 16 20 C 0.13 4.36 3.22 44.99 0.14 4.50 16 21 C -0.15 -3.99 9.26 71.98 0.67 -3.33 16 22 C -0.14 -4.72 8.70 71.98 0.63 -4.10 16 23 C -0.04 -1.56 9.47 21.70 0.21 -1.35 16 24 H 0.10 1.36 6.02 -2.38 -0.01 1.35 16 25 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.21 3.98 6.55 -2.91 -0.02 3.96 16 28 H 0.07 2.56 5.50 -2.39 -0.01 2.55 16 29 H 0.04 1.52 3.96 -21.35 -0.08 1.43 16 30 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 31 H 0.08 2.98 6.91 -2.39 -0.02 2.96 16 32 H 0.06 1.67 6.93 -2.39 -0.02 1.65 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 35 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.06 2.18 7.10 -2.39 -0.02 2.16 16 38 H 0.13 5.52 7.96 -2.91 -0.02 5.49 16 Total: -1.00 -65.22 321.20 4.99 -60.23 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.95 Total: 21.88 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 4.80 Total: -8.06 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -1.62 Total: -73.11 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -0.13 Total: -48.98 kcal Atomic # 14 Polarization: 32.94 SS G_CDS: 1.84 Total: 34.78 kcal Atomic # 16 Polarization: 14.12 SS G_CDS: -0.85 Total: 13.27 kcal Total: -65.22 4.99 -60.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519299486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.772 kcal (2) G-P(sol) polarization free energy of solvation -65.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds