Wall clock time and date at job start Tue Mar 31 2020 07:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21354 * 120.00570 * 2 1 4 4 C 1.46280 * 119.99923 * 180.02562 * 2 1 3 5 5 C 1.37030 * 125.18404 * 180.02562 * 4 2 1 6 6 C 1.36644 * 114.68724 * 179.97438 * 5 4 2 7 7 C 1.36695 * 114.78592 * 359.97438 * 6 5 4 8 8 C 1.47287 * 125.13846 * 179.97438 * 7 6 5 9 9 O 1.21612 * 120.00285 * 352.20536 * 8 7 6 10 10 N 1.34780 * 120.00496 * 172.21430 * 8 7 6 11 11 C 1.46508 * 119.99279 * 2.06792 * 10 8 7 12 12 C 1.50696 * 109.46874 * 82.25073 * 11 10 8 13 13 H 1.08008 * 120.00317 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00313 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00355 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99275 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.47040 * 90.00337 * 16 14 12 18 18 H 1.48507 * 109.46744 * 209.99734 * 16 14 12 19 19 H 1.48495 * 109.47629 * 329.99976 * 16 14 12 20 20 C 1.46491 * 120.00431 * 182.07649 * 10 8 7 21 21 C 1.53001 * 109.47315 * 124.79519 * 20 10 8 22 22 C 1.52995 * 109.47201 * 244.79155 * 20 10 8 23 23 S 1.75825 * 109.72274 * 0.02562 * 7 6 5 24 24 H 1.08992 * 109.47489 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47134 * 299.99827 * 1 2 3 26 26 H 1.09004 * 109.47076 * 59.99653 * 1 2 3 27 27 H 1.08001 * 122.65396 * 359.95093 * 5 4 2 28 28 H 1.08001 * 122.60133 * 179.72495 * 6 5 4 29 29 H 1.09000 * 109.46788 * 202.24297 * 11 10 8 30 30 H 1.08991 * 109.47303 * 322.24701 * 11 10 8 31 31 H 0.96996 * 120.00188 * 180.02562 * 15 14 12 32 32 H 1.09002 * 109.47158 * 4.79241 * 20 10 8 33 33 H 1.09002 * 109.47235 * 59.99769 * 21 20 10 34 34 H 1.09003 * 109.47299 * 180.02562 * 21 20 10 35 35 H 1.09009 * 109.47001 * 299.99632 * 21 20 10 36 36 H 1.09001 * 109.47120 * 60.00205 * 22 20 10 37 37 H 1.09002 * 109.47510 * 179.97438 * 22 20 10 38 38 H 1.09002 * 109.47556 * 300.00431 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1138 1.0509 0.0000 4 6 2.2383 -1.2668 -0.0006 5 6 3.6030 -1.3907 -0.0001 6 6 4.0592 -2.6787 -0.0003 7 6 3.0807 -3.6332 -0.0003 8 6 3.3149 -5.0873 -0.0009 9 8 4.4417 -5.5217 -0.1444 10 7 2.2804 -5.9367 0.1573 11 6 0.9173 -5.4150 0.2845 12 6 0.3600 -5.1266 -1.0857 13 1 0.9612 -5.3128 -1.9634 14 6 -0.9174 -4.6249 -1.2188 15 7 -1.4035 -4.3728 -2.4144 16 14 -1.9574 -4.3036 0.2993 17 1 -1.7282 -2.9143 0.7713 18 1 -3.3928 -4.4814 -0.0374 19 1 -1.5781 -5.2593 1.3707 20 6 2.5190 -7.3814 0.2022 21 6 1.9270 -7.9563 1.4906 22 6 1.8545 -8.0458 -1.0052 23 16 1.5002 -2.8627 -0.0008 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.2655 -0.5377 -0.0001 28 1 5.1111 -2.9235 -0.0043 29 1 0.2905 -6.1542 0.7833 30 1 0.9330 -4.4966 0.8711 31 1 -2.3020 -4.0195 -2.5081 32 1 3.5917 -7.5734 0.1779 33 1 0.8543 -7.7643 1.5149 34 1 2.1050 -9.0312 1.5242 35 1 2.4005 -7.4829 2.3508 36 1 2.2763 -7.6363 -1.9231 37 1 2.0324 -9.1207 -0.9720 38 1 0.7818 -7.8538 -0.9810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522585828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:27 Heat of formation + Delta-G solvation = -39.110251 kcal Electronic energy + Delta-G solvation = -22221.025837 eV Core-core repulsion = 18962.637653 eV Total energy + Delta-G solvation = -3258.388183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.52489 -38.99569 -36.73412 -35.72298 -33.41273 -31.98570 -30.71539 -28.53952 -28.27738 -26.83542 -24.98761 -23.00255 -21.78214 -20.64040 -19.21920 -17.94959 -17.45852 -17.37233 -16.24030 -15.48890 -15.02376 -14.86919 -14.68228 -14.31659 -14.11100 -13.72675 -13.45716 -12.93617 -12.87729 -12.76783 -12.76236 -12.35629 -12.19234 -11.94925 -11.82737 -11.72111 -11.43702 -11.24541 -10.98873 -10.92185 -10.51492 -10.35030 -9.89231 -9.83686 -9.54764 -9.35205 -9.13619 -8.36251 -8.05006 -7.81626 -6.55076 -4.50396 0.54309 2.09134 2.28557 2.52736 2.90942 3.01447 3.06175 3.20890 3.53581 3.76859 3.94898 4.39613 4.74438 5.02680 5.26257 5.36999 5.46490 5.54960 5.60775 5.66983 5.74369 5.87094 5.90615 5.95957 6.05561 6.08319 6.16146 6.19763 6.35245 6.41027 6.56252 6.66346 6.79689 6.82615 7.00307 7.12958 7.74954 7.82947 8.06332 8.52016 8.68021 8.98316 10.55011 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.008191 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.362557 B = 3417.363465 C = 4900.233486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.429 3.571 3 O -0.473 6.473 4 C -0.367 4.367 5 C -0.084 4.084 6 C -0.100 4.100 7 C -0.247 4.247 8 C 0.590 3.410 9 O -0.555 6.555 10 N -0.584 5.584 11 C 0.194 3.806 12 C -0.531 4.531 13 H 0.091 0.909 14 C 0.089 3.911 15 N -0.863 5.863 16 Si 0.840 3.160 17 H -0.259 1.259 18 H -0.273 1.273 19 H -0.257 1.257 20 C 0.138 3.862 21 C -0.161 4.161 22 C -0.155 4.155 23 S 0.377 5.623 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.135 0.865 28 H 0.143 0.857 29 H 0.057 0.943 30 H 0.027 0.973 31 H 0.273 0.727 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.739 -0.665 6.791 6.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.308 3.692 3 O -0.351 6.351 4 C -0.486 4.486 5 C -0.118 4.118 6 C -0.134 4.134 7 C -0.370 4.370 8 C 0.378 3.622 9 O -0.437 6.437 10 N -0.314 5.314 11 C 0.070 3.930 12 C -0.574 4.574 13 H 0.109 0.891 14 C -0.119 4.119 15 N -0.498 5.498 16 Si 0.664 3.336 17 H -0.184 1.184 18 H -0.198 1.198 19 H -0.181 1.181 20 C 0.035 3.965 21 C -0.219 4.219 22 C -0.213 4.213 23 S 0.657 5.343 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.153 0.847 28 H 0.160 0.840 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.093 -0.763 6.624 6.669 hybrid contribution 0.626 0.683 0.477 1.042 sum 0.533 -0.080 7.101 7.122 Atomic orbital electron populations 1.22245 0.93853 1.04814 1.04855 1.21463 0.90978 0.86389 0.70359 1.90499 1.72179 1.34026 1.38394 1.26727 1.00237 1.04388 1.17236 1.20336 0.93631 0.97178 1.00609 1.20206 1.00099 0.90770 1.02276 1.25028 0.99112 0.97528 1.15376 1.17121 0.84395 0.84312 0.76340 1.90699 1.22798 1.78001 1.52164 1.47836 1.07580 1.05931 1.70099 1.20101 0.80168 0.94081 0.98655 1.21457 1.00337 1.43594 0.91990 0.89101 1.24839 0.96982 0.94299 0.95736 1.69846 1.17179 1.40876 1.21860 0.87341 0.81531 0.80549 0.84151 1.18400 1.19790 1.18093 1.20953 1.01127 0.79257 0.95200 1.22166 1.01911 1.00626 0.97224 1.22091 1.02808 0.98709 0.97688 1.86121 1.01732 0.88432 1.58025 0.90170 0.88782 0.88452 0.84731 0.83956 0.92549 0.95622 0.91629 0.88892 0.91803 0.91693 0.92688 0.92408 0.92808 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.87 10.29 36.00 0.37 -2.50 16 2 C 0.43 7.45 7.22 -31.08 -0.22 7.23 16 3 O -0.47 -9.12 17.56 5.49 0.10 -9.02 16 4 C -0.37 -6.70 6.41 -36.79 -0.24 -6.93 16 5 C -0.08 -1.49 9.89 -40.60 -0.40 -1.89 16 6 C -0.10 -1.82 9.88 -40.72 -0.40 -2.22 16 7 C -0.25 -4.91 6.25 -36.46 -0.23 -5.14 16 8 C 0.59 12.33 7.58 -12.58 -0.10 12.24 16 9 O -0.56 -12.49 16.18 5.27 0.09 -12.41 16 10 N -0.58 -11.33 2.38 -168.79 -0.40 -11.73 16 11 C 0.19 3.84 3.14 -5.19 -0.02 3.82 16 12 C -0.53 -12.10 6.68 -34.44 -0.23 -12.33 16 13 H 0.09 2.39 8.06 -52.48 -0.42 1.96 16 14 C 0.09 2.07 5.08 -17.82 -0.09 1.98 16 15 N -0.86 -21.85 13.96 55.43 0.77 -21.07 16 16 Si 0.84 16.71 26.78 -169.99 -4.55 12.15 16 17 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 19 H -0.26 -4.83 6.54 56.52 0.37 -4.46 16 20 C 0.14 2.30 3.24 -67.94 -0.22 2.08 16 21 C -0.16 -2.21 9.10 37.16 0.34 -1.87 16 22 C -0.15 -2.51 8.95 37.16 0.33 -2.18 16 23 S 0.38 7.21 13.94 -107.50 -1.50 5.71 16 24 H 0.08 1.21 6.70 -51.93 -0.35 0.86 16 25 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.13 2.17 8.04 -52.49 -0.42 1.75 16 28 H 0.14 2.40 8.05 -52.49 -0.42 1.98 16 29 H 0.06 1.07 5.25 -51.93 -0.27 0.80 16 30 H 0.03 0.52 3.93 -22.16 -0.09 0.44 16 31 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 32 H 0.09 1.60 6.92 -51.93 -0.36 1.24 16 33 H 0.06 0.89 6.50 -51.93 -0.34 0.55 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.31 7.35 -51.93 -0.38 0.93 16 LS Contribution 323.21 15.07 4.87 4.87 Total: -1.00 -26.97 323.21 -6.48 -33.45 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.76 Total: 5.75 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.10 Total: -7.71 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.37 Total: -32.80 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.18 Total: -21.43 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -4.55 Total: 12.15 kcal Atomic # 16 Polarization: 7.21 SS G_CDS: -1.50 Total: 5.71 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.97 -6.48 -33.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522585828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.657 kcal (2) G-P(sol) polarization free energy of solvation -26.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds