Wall clock time and date at job start Tue Mar 31 2020 07:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21354 * 120.00570 * 2 1 4 4 C 1.46280 * 119.99923 * 180.02562 * 2 1 3 5 5 C 1.37030 * 125.18404 * 180.02562 * 4 2 1 6 6 C 1.36644 * 114.68724 * 179.97438 * 5 4 2 7 7 C 1.36695 * 114.78592 * 359.97438 * 6 5 4 8 8 C 1.47287 * 125.13846 * 179.97438 * 7 6 5 9 9 O 1.21612 * 120.00285 * 352.20536 * 8 7 6 10 10 N 1.34780 * 120.00496 * 172.21430 * 8 7 6 11 11 C 1.46508 * 119.99279 * 2.06792 * 10 8 7 12 12 C 1.50696 * 109.46874 * 82.25073 * 11 10 8 13 13 H 1.08008 * 120.00317 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00313 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00355 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99275 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.47040 * 90.00337 * 16 14 12 18 18 H 1.48507 * 109.46744 * 209.99734 * 16 14 12 19 19 H 1.48495 * 109.47629 * 329.99976 * 16 14 12 20 20 C 1.46491 * 120.00431 * 182.07649 * 10 8 7 21 21 C 1.53001 * 109.47315 * 124.79519 * 20 10 8 22 22 C 1.52995 * 109.47201 * 244.79155 * 20 10 8 23 23 S 1.75825 * 109.72274 * 0.02562 * 7 6 5 24 24 H 1.08992 * 109.47489 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47134 * 299.99827 * 1 2 3 26 26 H 1.09004 * 109.47076 * 59.99653 * 1 2 3 27 27 H 1.08001 * 122.65396 * 359.95093 * 5 4 2 28 28 H 1.08001 * 122.60133 * 179.72495 * 6 5 4 29 29 H 1.09000 * 109.46788 * 202.24297 * 11 10 8 30 30 H 1.08991 * 109.47303 * 322.24701 * 11 10 8 31 31 H 0.96996 * 120.00188 * 180.02562 * 15 14 12 32 32 H 1.09002 * 109.47158 * 4.79241 * 20 10 8 33 33 H 1.09002 * 109.47235 * 59.99769 * 21 20 10 34 34 H 1.09003 * 109.47299 * 180.02562 * 21 20 10 35 35 H 1.09009 * 109.47001 * 299.99632 * 21 20 10 36 36 H 1.09001 * 109.47120 * 60.00205 * 22 20 10 37 37 H 1.09002 * 109.47510 * 179.97438 * 22 20 10 38 38 H 1.09002 * 109.47556 * 300.00431 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1138 1.0509 0.0000 4 6 2.2383 -1.2668 -0.0006 5 6 3.6030 -1.3907 -0.0001 6 6 4.0592 -2.6787 -0.0003 7 6 3.0807 -3.6332 -0.0003 8 6 3.3149 -5.0873 -0.0009 9 8 4.4417 -5.5217 -0.1444 10 7 2.2804 -5.9367 0.1573 11 6 0.9173 -5.4150 0.2845 12 6 0.3600 -5.1266 -1.0857 13 1 0.9612 -5.3128 -1.9634 14 6 -0.9174 -4.6249 -1.2188 15 7 -1.4035 -4.3728 -2.4144 16 14 -1.9574 -4.3036 0.2993 17 1 -1.7282 -2.9143 0.7713 18 1 -3.3928 -4.4814 -0.0374 19 1 -1.5781 -5.2593 1.3707 20 6 2.5190 -7.3814 0.2022 21 6 1.9270 -7.9563 1.4906 22 6 1.8545 -8.0458 -1.0052 23 16 1.5002 -2.8627 -0.0008 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.2655 -0.5377 -0.0001 28 1 5.1111 -2.9235 -0.0043 29 1 0.2905 -6.1542 0.7833 30 1 0.9330 -4.4966 0.8711 31 1 -2.3020 -4.0195 -2.5081 32 1 3.5917 -7.5734 0.1779 33 1 0.8543 -7.7643 1.5149 34 1 2.1050 -9.0312 1.5242 35 1 2.4005 -7.4829 2.3508 36 1 2.2763 -7.6363 -1.9231 37 1 2.0324 -9.1207 -0.9720 38 1 0.7818 -7.8538 -0.9810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522585828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:26 Heat of formation + Delta-G solvation = -54.094877 kcal Electronic energy + Delta-G solvation = -22221.675619 eV Core-core repulsion = 18962.637653 eV Total energy + Delta-G solvation = -3259.037966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.09056 -40.42094 -38.21499 -37.28702 -35.05621 -33.52805 -32.03253 -30.04867 -29.84004 -28.05837 -26.43463 -24.70441 -23.21451 -22.05392 -20.64781 -19.44655 -19.13906 -18.98858 -17.74868 -16.96191 -16.51873 -16.38588 -16.07483 -15.86144 -15.58191 -15.08378 -14.95646 -14.54364 -14.37233 -14.20077 -14.13475 -13.67126 -13.52499 -13.39329 -13.06884 -12.99274 -12.81630 -12.73098 -12.44910 -12.34310 -11.98595 -11.79713 -11.56664 -11.29540 -11.11456 -10.88313 -10.83293 -9.91412 -9.57205 -9.35388 -8.32561 -6.33663 -0.94058 0.56948 0.84006 1.02880 1.37195 1.44170 1.49257 1.74922 2.03966 2.21449 2.30273 3.00534 3.07675 3.52200 4.02663 4.06681 4.20703 4.28141 4.34998 4.38517 4.43494 4.48709 4.50709 4.60111 4.78630 4.82458 4.91818 4.96231 4.99410 5.04301 5.19711 5.28237 5.33925 5.35429 5.45511 5.65134 6.11305 6.37357 6.41669 6.64805 7.06249 7.21458 8.81518 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.008191 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.362557 B = 3417.363465 C = 4900.233486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.430 3.570 3 O -0.492 6.492 4 C -0.364 4.364 5 C -0.084 4.084 6 C -0.091 4.091 7 C -0.270 4.270 8 C 0.582 3.418 9 O -0.580 6.580 10 N -0.584 5.584 11 C 0.199 3.801 12 C -0.527 4.527 13 H 0.042 0.958 14 C 0.053 3.947 15 N -0.914 5.914 16 Si 0.879 3.121 17 H -0.233 1.233 18 H -0.279 1.279 19 H -0.235 1.235 20 C 0.128 3.872 21 C -0.153 4.153 22 C -0.146 4.146 23 S 0.365 5.635 24 H 0.072 0.928 25 H 0.123 0.877 26 H 0.113 0.887 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.274 0.726 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.088 0.912 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.244 -0.316 8.944 8.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.310 3.690 3 O -0.372 6.372 4 C -0.483 4.483 5 C -0.117 4.117 6 C -0.125 4.125 7 C -0.393 4.393 8 C 0.370 3.630 9 O -0.464 6.464 10 N -0.314 5.314 11 C 0.075 3.925 12 C -0.569 4.569 13 H 0.061 0.939 14 C -0.151 4.151 15 N -0.551 5.551 16 Si 0.700 3.300 17 H -0.157 1.157 18 H -0.204 1.204 19 H -0.158 1.158 20 C 0.026 3.974 21 C -0.210 4.210 22 C -0.204 4.204 23 S 0.644 5.356 24 H 0.091 0.909 25 H 0.141 0.859 26 H 0.131 0.869 27 H 0.171 0.829 28 H 0.173 0.827 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.106 0.894 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.596 -0.451 8.792 8.823 hybrid contribution 0.920 0.617 -0.254 1.136 sum 0.324 0.166 8.538 8.546 Atomic orbital electron populations 1.22295 0.91217 1.04956 1.07000 1.21848 0.92357 0.85455 0.69353 1.90500 1.72878 1.34380 1.39432 1.26941 1.00578 1.04394 1.16413 1.20563 0.93835 0.97471 0.99843 1.20427 1.00558 0.90720 1.00796 1.25129 0.99933 0.97467 1.16774 1.17367 0.84432 0.84970 0.76185 1.90669 1.23590 1.78530 1.53564 1.47985 1.07104 1.07052 1.69216 1.20025 0.80386 0.95020 0.97094 1.21277 1.00055 1.43811 0.91779 0.93938 1.25431 0.97823 0.93712 0.98142 1.69979 1.17748 1.43013 1.24362 0.86681 0.79409 0.82460 0.81442 1.15682 1.20427 1.15801 1.21236 1.01151 0.77981 0.97075 1.22114 1.01438 1.02314 0.95178 1.22013 1.01353 1.00732 0.96308 1.85970 1.01681 0.89028 1.58932 0.90931 0.85909 0.86904 0.82897 0.82737 0.90999 0.94492 0.91656 0.89520 0.91873 0.88741 0.92330 0.95251 0.89357 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.10 10.29 71.23 0.73 -4.37 16 2 C 0.43 14.00 7.22 27.78 0.20 14.21 16 3 O -0.49 -17.96 17.56 -3.26 -0.06 -18.02 16 4 C -0.36 -12.72 6.41 24.08 0.15 -12.57 16 5 C -0.08 -2.84 9.89 21.61 0.21 -2.62 16 6 C -0.09 -3.23 9.88 21.54 0.21 -3.02 16 7 C -0.27 -10.67 6.25 24.29 0.15 -10.52 16 8 C 0.58 24.47 7.58 86.62 0.66 25.13 16 9 O -0.58 -26.37 16.18 -4.07 -0.07 -26.43 16 10 N -0.58 -22.60 2.38 -806.18 -1.92 -24.52 16 11 C 0.20 7.73 3.14 85.63 0.27 8.00 16 12 C -0.53 -24.49 6.68 25.60 0.17 -24.31 16 13 H 0.04 2.36 8.06 -2.91 -0.02 2.33 16 14 C 0.05 2.45 5.08 84.66 0.43 2.88 16 15 N -0.91 -47.51 13.96 21.45 0.30 -47.21 16 16 Si 0.88 32.78 26.78 68.60 1.84 34.61 16 17 H -0.23 -7.71 7.11 99.48 0.71 -7.00 16 18 H -0.28 -10.68 7.11 99.48 0.71 -9.97 16 19 H -0.24 -7.90 6.54 99.48 0.65 -7.25 16 20 C 0.13 4.17 3.24 44.99 0.15 4.32 16 21 C -0.15 -3.80 9.10 71.98 0.65 -3.15 16 22 C -0.15 -4.72 8.95 71.98 0.64 -4.07 16 23 S 0.37 13.65 13.94 -56.49 -0.79 12.86 16 24 H 0.07 2.01 6.70 -2.39 -0.02 1.99 16 25 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.15 4.60 8.04 -2.91 -0.02 4.57 16 28 H 0.16 5.05 8.05 -2.91 -0.02 5.03 16 29 H 0.07 2.60 5.25 -2.39 -0.01 2.59 16 30 H 0.04 1.43 3.93 -21.32 -0.08 1.34 16 31 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 32 H 0.09 2.95 6.92 -2.39 -0.02 2.94 16 33 H 0.06 1.59 6.50 -2.39 -0.02 1.57 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16 36 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.06 2.09 7.35 -2.39 -0.02 2.08 16 Total: -1.00 -59.46 323.21 4.89 -54.57 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.95 Total: 24.23 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 4.64 Total: -10.10 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.62 Total: -71.72 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -0.12 Total: -44.45 kcal Atomic # 14 Polarization: 32.78 SS G_CDS: 1.84 Total: 34.61 kcal Atomic # 16 Polarization: 13.65 SS G_CDS: -0.79 Total: 12.86 kcal Total: -59.46 4.89 -54.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522585828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.476 kcal (2) G-P(sol) polarization free energy of solvation -59.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds