Wall clock time and date at job start Tue Mar 31 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34777 * 116.99709 * 2 1 4 4 O 1.21533 * 120.00303 * 359.97438 * 3 2 1 5 5 C 1.47243 * 119.99706 * 179.72464 * 3 2 1 6 6 C 1.40043 * 120.61775 * 0.26891 * 5 3 2 7 7 C 1.38308 * 118.36876 * 179.97438 * 6 5 3 8 8 C 1.38426 * 119.52905 * 0.02562 * 7 6 5 9 9 N 1.31812 * 121.24295 * 0.02562 * 8 7 6 10 10 C 1.32511 * 121.77725 * 359.67636 * 9 8 7 11 11 S 1.76201 * 119.84502 * 180.31335 * 10 9 8 12 12 C 1.80997 * 99.99786 * 0.27200 * 11 10 9 13 13 C 1.52995 * 109.47145 * 179.97438 * 12 11 10 14 14 C 1.53005 * 109.47282 * 299.99883 * 13 12 11 15 15 C 1.52998 * 109.47314 * 59.99780 * 13 12 11 16 16 C 1.50703 * 109.47315 * 179.97438 * 13 12 11 17 17 H 1.08000 * 120.00128 * 0.02562 * 16 13 12 18 18 C 1.37873 * 120.00068 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00036 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 120.00059 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47235 * 60.00145 * 20 18 16 22 22 H 1.48496 * 109.47151 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46843 * 299.99997 * 20 18 16 24 24 H 1.08997 * 109.46942 * 60.00366 * 1 2 3 25 25 H 1.09007 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47583 * 300.00355 * 1 2 3 27 27 H 1.07997 * 120.81533 * 359.95934 * 6 5 3 28 28 H 1.08000 * 120.23675 * 180.02562 * 7 6 5 29 29 H 1.07992 * 119.37817 * 179.97438 * 8 7 6 30 30 H 1.09003 * 109.47030 * 300.00103 * 12 11 10 31 31 H 1.09005 * 109.47477 * 59.99422 * 12 11 10 32 32 H 1.08996 * 109.46882 * 59.99538 * 14 13 12 33 33 H 1.08998 * 109.47429 * 179.97438 * 14 13 12 34 34 H 1.09000 * 109.46841 * 300.00423 * 14 13 12 35 35 H 1.09003 * 109.46752 * 59.99895 * 15 13 12 36 36 H 1.08998 * 109.47398 * 180.02562 * 15 13 12 37 37 H 1.08996 * 109.47308 * 300.00742 * 15 13 12 38 38 H 0.97000 * 119.99704 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4019 2.2202 -0.0005 5 6 3.5342 1.2780 0.0061 6 6 4.3096 0.1118 0.0063 7 6 5.6869 0.2383 0.0117 8 6 6.2560 1.5001 0.0171 9 7 5.5099 2.5867 0.0179 10 6 4.1863 2.5243 0.0071 11 16 3.2384 4.0097 0.0003 12 6 4.5720 5.2334 0.0034 13 6 3.9725 6.6410 -0.0024 14 6 3.1146 6.8248 -1.2559 15 6 3.1035 6.8304 1.2425 16 6 5.0828 7.6600 0.0008 17 1 6.1131 7.3360 0.0061 18 6 4.7834 9.0058 -0.0039 19 7 3.5288 9.4004 -0.0108 20 14 6.1597 10.2689 -0.0006 21 1 7.0034 10.0848 -1.2087 22 1 5.5778 11.6351 -0.0062 23 1 6.9920 10.0908 1.2163 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.8435 -0.8624 0.0027 28 1 6.3138 -0.6411 0.0116 29 1 7.3317 1.5961 0.0217 30 1 5.1834 5.1022 0.8962 31 1 5.1909 5.0988 -0.8837 32 1 2.3116 6.0878 -1.2578 33 1 2.6871 7.8275 -1.2599 34 1 3.7337 6.6898 -2.1428 35 1 3.7147 6.6995 2.1355 36 1 2.6760 7.8331 1.2381 37 1 2.3005 6.0934 1.2407 38 1 3.3183 10.3472 -0.0138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570583011.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:38 Heat of formation + Delta-G solvation = -52.405061 kcal Electronic energy + Delta-G solvation = -21312.015893 eV Core-core repulsion = 18053.051204 eV Total energy + Delta-G solvation = -3258.964690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.65256 -39.40859 -36.44273 -35.87535 -32.85559 -31.51029 -31.45049 -27.92710 -26.26066 -25.60713 -25.08215 -24.52687 -23.71889 -21.29250 -19.00547 -18.16306 -17.51281 -16.98594 -16.39604 -16.01488 -15.87478 -15.08269 -14.65684 -14.30133 -14.24921 -13.72998 -13.30167 -13.18845 -12.99505 -12.80329 -12.41390 -12.16111 -11.82743 -11.35874 -11.22565 -10.94259 -10.86537 -10.80211 -10.67290 -10.27159 -10.11521 -10.08562 -9.65118 -9.53860 -9.45367 -9.44951 -9.28905 -8.51277 -8.32395 -7.08619 -5.94037 -4.04726 0.49602 1.11777 2.00760 2.56666 2.59972 3.07040 3.33245 3.37778 3.41159 3.69861 4.44850 4.49245 4.67444 4.75364 4.95402 5.01356 5.09510 5.11231 5.31582 5.32999 5.48292 5.77747 5.93661 6.17155 6.27795 6.28549 6.43095 6.67373 6.91697 7.00316 7.13997 7.14555 7.43400 7.66650 7.72985 7.76377 7.77341 8.09832 8.22825 8.46876 8.94391 9.60024 11.06992 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023049 B = 0.004238 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.526788 B = 6605.341490 C = 7623.504947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.503 3.497 4 O -0.471 6.471 5 C -0.188 4.188 6 C 0.000 4.000 7 C -0.216 4.216 8 C 0.156 3.844 9 N -0.491 5.491 10 C 0.158 3.842 11 S 0.042 5.958 12 C -0.110 4.110 13 C 0.079 3.921 14 C -0.135 4.135 15 C -0.135 4.135 16 C -0.502 4.502 17 H 0.056 0.944 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.893 3.107 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.146 0.854 28 H 0.140 0.860 29 H 0.162 0.838 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.016 0.984 33 H 0.086 0.914 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.086 0.914 37 H 0.016 0.984 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.155 -20.275 0.016 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.278 6.278 3 C 0.347 3.653 4 O -0.359 6.359 5 C -0.201 4.201 6 C -0.027 4.027 7 C -0.241 4.241 8 C -0.008 4.008 9 N -0.204 5.204 10 C -0.090 4.090 11 S 0.293 5.707 12 C -0.258 4.258 13 C 0.077 3.923 14 C -0.193 4.193 15 C -0.193 4.193 16 C -0.542 4.542 17 H 0.074 0.926 18 C -0.135 4.135 19 N -0.524 5.524 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.083 0.917 25 H 0.118 0.882 26 H 0.083 0.917 27 H 0.164 0.836 28 H 0.158 0.842 29 H 0.179 0.821 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.035 0.965 33 H 0.104 0.896 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.104 0.896 37 H 0.035 0.965 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.419 -18.572 0.017 18.729 hybrid contribution 1.725 -0.418 0.003 1.775 sum -0.694 -18.991 0.020 19.003 Atomic orbital electron populations 1.23253 0.76020 1.03435 1.02890 1.86507 1.23500 1.32691 1.85062 1.20779 0.88599 0.81737 0.74233 1.90879 1.65737 1.34911 1.44339 1.19490 0.90351 0.94340 1.15934 1.21732 0.93695 0.97770 0.89478 1.21944 0.95201 0.99253 1.07725 1.23106 1.00482 0.87926 0.89319 1.68433 1.03854 1.32051 1.16028 1.24263 0.93570 0.98502 0.92671 1.87063 1.09123 0.90978 1.83503 1.24290 0.98704 0.98081 1.04736 1.18011 0.94067 0.86989 0.93185 1.21902 0.97650 1.02396 0.97312 1.21901 0.97636 1.02397 0.97322 1.21000 0.92093 0.90276 1.50858 0.92607 1.24891 0.95438 0.98249 0.94947 1.69813 1.16658 1.15401 1.50508 0.86646 0.82254 0.80429 0.78573 1.20339 1.21318 1.20343 0.91728 0.88218 0.91736 0.83593 0.84244 0.82111 0.90406 0.90427 0.96476 0.89551 0.95466 0.95463 0.89556 0.96480 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.57 101.05 1.07 1.41 16 2 O -0.36 -4.35 9.89 -40.70 -0.40 -4.76 16 3 C 0.50 7.68 7.88 34.39 0.27 7.95 16 4 O -0.47 -8.51 13.59 -19.29 -0.26 -8.77 16 5 C -0.19 -2.84 5.91 -104.65 -0.62 -3.46 16 6 C 0.00 0.00 9.73 -38.88 -0.38 -0.38 16 7 C -0.22 -2.15 10.09 -39.49 -0.40 -2.55 16 8 C 0.16 1.90 11.16 -17.49 -0.20 1.70 16 9 N -0.49 -8.19 9.13 -11.66 -0.11 -8.30 16 10 C 0.16 2.79 7.02 -16.34 -0.11 2.67 16 11 S 0.04 0.85 16.03 -107.50 -1.72 -0.87 16 12 C -0.11 -2.45 3.78 37.16 0.14 -2.31 16 13 C 0.08 1.99 0.52 -155.66 -0.08 1.90 16 14 C -0.13 -3.35 8.01 37.16 0.30 -3.05 16 15 C -0.13 -3.35 8.01 37.16 0.30 -3.05 16 16 C -0.50 -13.67 8.01 -34.44 -0.28 -13.95 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.80 5.15 -17.82 -0.09 1.70 16 19 N -0.89 -24.59 9.35 55.43 0.52 -24.07 16 20 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.15 1.22 7.70 -52.49 -0.40 0.82 16 28 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 29 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.08 1.75 8.12 -51.91 -0.42 1.33 16 31 H 0.08 1.75 8.13 -51.91 -0.42 1.32 16 32 H 0.02 0.39 6.91 -51.93 -0.36 0.03 16 33 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 37 H 0.02 0.39 6.91 -51.93 -0.36 0.03 16 38 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -30.85 327.46 -7.24 -38.08 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.10 Total: -1.03 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -0.08 Total: -11.39 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.41 Total: -32.37 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.66 Total: -13.53 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -1.72 Total: -0.87 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.85 -7.24 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570583011.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.322 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds